TCONS_00022157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022157
Unique NameTCONS_00022157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1744

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022157 ID=TCONS_00022157|Name=TCONS_00022157|organism=Clytia hemisphaerica|type=transcript|length=1744bp
CATCACGTCTATTGGTACCATTATGCCCGAAGCTGAATATAAAATTGCGA
ACCCTGATGAAGATGGCAGCGGAGAGTTATGTTTCAGAGGGCGAATGAAC
TTCATGGGATATCTAAACAACCTGGAGAAAGTGAAGGAAACGATTGACGA
GGAGAATTGGTTACATACTGGAGACGTCGGTAAAATTGATAAAGACGGTT
TCTTTTATATCACCGGAAGGATAAAGGAGTTGATCATCACAGCTGGTGGA
GAAAACATCGCCCCAGTTCCAATCGAAGATGAGATCAAAACAGAACTACC
TTTCATTGGCACTGCAATGGTTATTGGTgataaaaagaaattcttatccT
GTCTTCTAACTTGTCAGGTTGAGATTGACTTAGACACAGGTTTAGCGAAA
GACAACTTACAAGCGAGCGCAGTACATTACCTGAAGAGTATCGGAGTTGA
AGCAACCAAAGCAGAAGACCTCACCACAGACATGCCTGAAGTCTTAAAAA
CCGCCATACAAACTGGTATCAATAACGCGAACAAAAAAGCCGTCTCAAAC
GCAGCTAGGGTACAAAAATGGAAATTATTACCAATAGAATTTACAACTGC
TGGCGGAGAATTAGGACCCACGCAGAAGTTACGTCGACCTCACGTCATGA
AAATGTACAAAGAAACGATCGACGCCTTCTACAGTGGATAAATAAACGTC
TTCGTTTTCGTTCTTCAACAATTTTCTTCTGTTTCTCCTATTCACAATAA
TGTACAGttctttcataatttttttgcgctttttgtttattttttttgtt
tttcgtgTAAAATTATTTATTAGGTTCATCAACAATAGTATAATGATACG
AACGTTTCAACCCTCGACTTTTGACAACGAACATCCCACGCAACCTTCTT
TCTTCAAATAGAATTGGAAATTGCTCCTAAAGCACAGCCTTTTTGTTAGA
ATAttaaatgttcaaaaatagAGCAGATCTCTTCGAACTTTTATTCTACG
ATATTCGAATTTCATGAATTTCTAGATTCTTGAGAATGAACTGAAccact
ttttaaagatttgtaaGAGGTTCTCACCGTGAAAGACGACATTTTTCGCC
GTAAAATTGACGAGTCTATTTCCTTATGAAAAAGATATCCCTATGTTTGT
TTTCACTCTGTGTTGAATCAGattaaatttagaaattcaaaaaagatcta
tttttcatgaaaatctaCAAATGAACAAGAGATAGGGAAAATAATGGATG
CGTCAGTAGTGGTCTGGTTAGTAAGTTAGTGGAAAAAGAGGAAGTTCTTT
TGTTCATAttcacaaaaatatattttttttctcatattcCACGCAAATGT
TCAGTTGAAAAATTCGTTGTAATAATTAAATTGATGATaaaggaaaatca
attttttttttcaccctaACTTTTATATAGTTCTAAGaatatttgatgtt
tttaaaaattattttttgttcttCCTCTGAAAAAAATGTGCGTCAATTTT
AAccttgaaaagaaagaaaaattgaaacacttattttttttgaatatacA
CAATTTGTTCCCATATTGTACGTTAGGAAATCATTATAAATTACATTATT
TTCACAAGGGGCTTCGATATAACGTTTCCCTTTTCATTAGgttatttcag
tttttttactttttttaaaaatttgatggCAAATAGTAATTATGCTTTTT
CATActgattttttgagaaaaagaaatttgacaaCTATTACAAA
Run BLAST on NCBI

transcript from alignment at sc0000406:171802..177800+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022157 ID=TCONS_00022157|Name=TCONS_00022157|organism=Clytia hemisphaerica|type=transcript|length=5999bp|location=Sequence derived from alignment at sc0000406:171802..177800+ (Clytia hemisphaerica)
CATCACGTCTATTGGTACCATTATGCCCGAAGCTGAATATAAAATTGCGA
ACCCTGATGAAGATGGCAGCGGAGAGGTAtgttagctctagtttagacgg
cccacttttcgccctgcctattctaattgtgaattaaagttggcataaag
tgggctgtctaaagtcaatgcaatgCCCTCTTTTGAcctcaatgcaatga
cttttttcaacattttccaaGCAAATgatttaactgccaactttgtaccc
cctttctgcctactctaacaattagaataggcagggcagaaagtcggccg
tctaaactagagttTAATCAATTTATTACTCTCcagattctaaaaatttt
aatcgCATTATAAAGtcttattacaattttttttcttctattggACCAGG
ACTTTGGAGAAATCAGCCTGAAAATGGGCAAAATGGACTGACTTCTAAGG
GCTGGAACTTTAGATCCAAGAAGAATATGAATAATcggaaatgaaaaata
aaatgaaattagCGATGCTCAGGGCTTTGGAAAAAAAGCTCTTCTttcgt
ttttcatcttcactgTCAAGATCTTTCAAAGTTCCTTCTTGGTGATATTT
TGTAAAAGGACTGCTTATTAATTATTTGATTCCCCCTTGTCTTTTCAGTT
ATGTTTCAGAGGGCGAATGAACTTCATGGGATATCTAAACAACCTGGAGA
AAGTGAAGGAAACGATTGACGAGGAGAATTGGTTACATACTGGAGACGTC
GGTAAAATTGATAAAGTAAGTCAGCGAACTTGAGGCCAAACAAAACTGTT
AACCCTTTTAAGTAATTAAATTCCGATGCGTTTTTTTCTCAATCATGATA
CAATGGTAAGTCCGCGGAAGAAATTCAATCTTGTATTCAAAGCCACTTTT
TGcaccattttttaaattcactaTGATGGACGTGATGCGATGCAATGCGG
TGCAAACGaatccaacatttgatccaacattattgttggatcaaatgttg
ggttcatttgtgcaagtcataaaattgcaactttttaagaaaattgttgg
aaatcaTATTGGATGAAGTTTGATAGCTATCAaacttttcatccaacatt
ttttatgagattgacgtcacttttaagttggtttcaatgttggatgcATT
TGCTTAACTAAGGggctgggttcgagtttggatGAAATCTTCTCTTATCA
GTTTTTCGGTTATTTCTTCTTGTGCATAGTTGTCTTGAGTGAAAACCTTC
TGTTAAGCTTCTTATAAACTTGATGCCAATCCAAACTTTcaaaggccggc
gcaaatgaatccaacattcaatccaacatttccaattcattggacgaaaa
gtcacgtggaaaaattcgaaaagttgtATGAAAAGTTATTtgcgcaaaaa
cgtcaaacattttcatccaacatgattacgcaaatgcatccaacattgaa
accgacataaaagtgacgtcaatctcattaaaaaatgttggGTGAAAAGT
TTAacggcgatcaaacttcatccaataAATAGCTACTAGGCTTACTAAAT
GATGAGTTATATTTATCATGTGCATAATAATTCtatattttctccttttt
tatcCAGGACGGTTTCTTTTATATCACCGGAAGGATAAAGGGTAAGAGca
atcattttttgttttcgtaAAATGGTCGATAATTTTTTCTACAACTGAGA
ACagatcaaaaatttgatttaaaagtaGCCATTCCATAGAGttgaaataa
agaaaagtcAAATAGATTTTATTCATTAAGGAAAAGCTTTTCGGTATAAC
CATCATCAGTgctacaatctttcaagaaatatattgagaattccggttat
tttgacgtttCTCGTGATTTAAAGTTCAGGCgaaaaagtcgattttgggc
tatctctttaacttaatcgaatatttcaatttgggaggggttggcagact
tccaggctatattctgagccttactggaccatttttgaacttttggatcc
tcaggtcctaagtcttaagtctagcgttaaaactcagagttaaaactcta
cccttcgaacctactttagagcacttacaaatcgattgtggtttcaaaac
ttcctggggaatttcccatttgtctcaaatatttcttgaaggattgtagA
TCTTGCAGATCAAAATCTTATTCTTTCGTGTATAATAATTATAAAGACTC
AGCCCAGACAgtacacaacgtcaaaacaacgtccatctgacattcacaac
gtccaaataacgttgtttgaacgttgaaacaacgttgtgtccTAGCTGGg
aagttgagaatatttcttttttaacaGCACACAACAATAGATTCCTTTTC
CTTTGTTTCTTTAGAGTTGATCATCACAGCTGGTGGAGAAAACATCGCCC
CAGTTCCAATCGAAGATGAGATCAAAACAGAACTACCTTTCATTGGCACT
GCAATGGTTATTGGTgataaaaagaaattcttatccTGTCTTCTAACTTG
TCAGGTATGTTCCTTTAACGCTCCGTCCCGAAACTACTCCGTCTTTGTGA
ATGAATGAATACAAGGAATACAAGGAATGGAAGAATAAatcatttcactt
tttttctagGTTGAGATTGACTTAGACACAGGTTTAGCGAAAGACAACTT
ACAAGCGAGCGCAGTACATTACCTGAAGAGTATCGGAGTTGAAGCAACCA
AAGCAGAAGACCTCACCACAGACATGCCTGAAGTCTTAAAAACCGCCATA
CAAACTGGTATCAATAACGCGAACAAAAAAGCCGTCTCAAACGCAGCTAG
GGTGAGTTTCCATATAGTATTGGcagtactttttctttgtagtgTCTGCT
CTATACTTTTATCTTTATTCTTAGCTGTACAAATCGACATGTCAAAGTTC
AGTTAACGTTATATTTGACTGCGCGCATCTctgaaatacacgctttttgg
acctaccccggtggggtggaggtcctataaattaacctgtgttcgttcgt
tcgtccgttcgtccgttcgtctgttaccaacttttctcaggattgaatca
tagcaatcttttgatttttggtacaaaggtgcaaaatggtggtgggcaaa
atgtgacggagcccgattttcgaaaaaaaaattttgggggcaaatttggg
ccaaaaaacggctaaaaaacgggatcattaattttttcagattttttgca
tgaaagtagggtaccatcataggtagaagatagctcaagcagatttttgc
aaaaaaattttgttggctcaaaaaacgcatgtttatctataagaatcact
attaataagcatacatcaatgttcttagtcaaattactccatttttttat
gagatacatgttttttttgctcatgagggcttacttttgaagaatatgtg
tgtttagacatgaaattttggtagcttggcgtgttttttatagaaaaact
ggccaaattcgatatttttttataagctatcaattacttaggtattagct
ttactcgagattggctctttcattctttatgattttttgcacaaagatgc
attactataaacccttgaatgtgacggagcccggttttcgaaaaaaaatg
tttttgggcaaatttgggccaaaaatcggctaaaaaaagggttttttaga
ctttgtgaaatatttgatcattgtttttttctgattttttgcatgaaagt
aggtaaaagatggctcaagcagatttttataaaaaaagaacttttcagct
caagaaacgcatctttatttataagaatcacataagcatacatcaatgtt
cttacccaaattactcaatttttttatgagatagatgtttttttttgctc
acgacgttttaaatatgaaagaatatttcaagagcatgaaattttggttt
ctaaacgttttttttataagaaacaaacgactaattttagtagatcgtca
ctatttgtgttctgaataattgtttaacggtcatgctcacgtagatatca
attatatatgtgttaaaggcataatcaggtaggtccataaaagtatcact
tgtttttttaagaatgtaattttacaagaacacgaggctgaaaattgtta
aaacttaagaacaatttaagaacaatctgagccagCCTCAAATAGCAAAA
TCTACTGATTTTTACAGGTTTTCACCCATTTTAAGTCTTATTAAGTGAAG
AAACTAAACGTATTAAGAATATCGTAAGaacattaaaatttcaaaaaatt
aagaacagacCAGTctgagcaaaaatttactggttctttaaaaaaagcgt
gtataagaACATTGCTTTCTGACTTTGTGtttgaaaattgggaaaatcaA
TTTCACAGACTTGATATATAATTTGATTCATTTTCCCTACGTGAGTCGAT
TTCGAACTACCGTGAGTTTTATCAAGCATTTTTCTCCCTCTTTTTTCAGG
TACAAAAATGGAAATTATTACCAATAGAATTTACAACTGCTGGCGGAGAA
TTAGGTAATTAGGAAGCTAGTCTTTTTAATGGTAGCAGACACAAGAACCT
CAGACTTGAGGAAATATTAGTTTTCTGCGTGGTTGAAAAATCACGCCATT
CATTGGAAGAAAATGGaagttttcaaaggaaaaaaagaaagaaaggccAG
AATGGGAAAAATActtcttttaaatttaattGAGCCTAACTTTGGTTGGC
TCTCTCTTATTTGACCTTCAAGGGACCAGAAGAGATTGAATTTTATGCAG
TTTTCAAGCTGAGAGGACCACCGATGTTATATTTCAAACTCCAGAAATTT
TCGATTTAAAGCGGTTCGAATATGAGAGATTTGACTCTCTAACTTTGTTT
TATGTATTGATATTTTCAGGACCCACGCAGAAGTTACGTCGACCTCACGT
CATGAAAATGTACAAAGAAACGATCGACGCCTTCTACAGTGGATAAATAA
ACGTCTTCGTTTTCGTTCTTCAACAATTTTCTTCTGTTTCTCCTATTCAC
AATAATGTACAGttctttcataatttttttgcgctttttgtttatttttt
ttgtttttcgtgTAAAATTATTTATTAGGTTCATCAACAATAGTATAATG
ATACGAACGTTTCAACCCTCGACTTTTGACAACGAACATCCCACGCAACC
TTCTTTCTTCAAATAGAATTGGAAATTGCTCCTAAAGCACAGCCTTTTTG
TTAGAATAttaaatgttcaaaaatagAGCAGATCTCTTCGAACTTTTATT
CTACGATATTCGAATTTCATGAATTTCTAGATTCTTGAGAATGAACTGAA
ccactttttaaagatttgtaaGAGGTTCTCACCGTGAAAGACGACATTTT
TCGCCGTAAAATTGACGAGTCTATTTCCTTATGAAAAAGATATCCCTATG
TTTGTTTTCACTCTGTGTTGAATCAGattaaatttagaaattcaaaaaag
atctatttttcatgaaaatctaCAAATGAACAAGAGATAGGGAAAATAAT
GGATGCGTCAGTAGTGGTCTGGTTAGTAAGTTAGTGGAAAAAGAGGAAGT
TCTTTTGTTCATAttcacaaaaatatattttttttctcatattcCACGCA
AATGTTCAGTTGAAAAATTCGTTGTAATAATTAAATTGATGATaaaggaa
aatcaattttttttttcaccctaACTTTTATATAGTTCTAAGaatatttg
atgtttttaaaaattattttttgttcttCCTCTGAAAAAAATGTGCGTCA
ATTTTAAccttgaaaagaaagaaaaattgaaacacttattttttttgaat
atacACAATTTGTTCCCATATTGTACGTTAGGAAATCATTATAAATTACA
TTATTTTCACAAGGGGCTTCGATATAACGTTTCCCTTTTCATTAGgttat
ttcagtttttttactttttttaaaaatttgatggCAAATAGTAATTATGC
TTTTTCATActgattttttgagaaaaagaaatttgacaaCTATTACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012426XLOC_012426Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022157-exon-sc0000406-1491911889:171802..171877TCONS_00022157-exon-sc0000406-1491911889:171802..171877Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1510915933:171802..171877TCONS_00022157-exon-sc0000406-1510915933:171802..171877Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1575043694:171802..171877TCONS_00022157-exon-sc0000406-1575043694:171802..171877Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1491911889:172450..172566TCONS_00022157-exon-sc0000406-1491911889:172450..172566Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1510915933:172450..172566TCONS_00022157-exon-sc0000406-1510915933:172450..172566Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1575043694:172450..172566TCONS_00022157-exon-sc0000406-1575043694:172450..172566Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1491911889:173409..173442TCONS_00022157-exon-sc0000406-1491911889:173409..173442Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1510915933:173409..173442TCONS_00022157-exon-sc0000406-1510915933:173409..173442Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1575043694:173409..173442TCONS_00022157-exon-sc0000406-1575043694:173409..173442Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1491911889:174166..174305TCONS_00022157-exon-sc0000406-1491911889:174166..174305Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1510915933:174166..174305TCONS_00022157-exon-sc0000406-1510915933:174166..174305Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1575043694:174166..174305TCONS_00022157-exon-sc0000406-1575043694:174166..174305Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1491911889:174411..174602TCONS_00022157-exon-sc0000406-1491911889:174411..174602Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1510915933:174411..174602TCONS_00022157-exon-sc0000406-1510915933:174411..174602Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1575043694:174411..174602TCONS_00022157-exon-sc0000406-1575043694:174411..174602Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1491911889:176251..176305TCONS_00022157-exon-sc0000406-1491911889:176251..176305Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1510915933:176251..176305TCONS_00022157-exon-sc0000406-1510915933:176251..176305Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1575043694:176251..176305TCONS_00022157-exon-sc0000406-1575043694:176251..176305Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1491911889:176671..177800TCONS_00022157-exon-sc0000406-1491911889:176671..177800Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1510915933:176671..177800TCONS_00022157-exon-sc0000406-1510915933:176671..177800Clytia hemisphaericaexon
TCONS_00022157-exon-sc0000406-1575043694:176671..177800TCONS_00022157-exon-sc0000406-1575043694:176671..177800Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000406supercontigsc0000406:171802..177800 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.621534	0.758716	0.369505	0.35378	0.685302	1.17819	0	0	0	0	0	0.0749553	0.062043	0	0	0	0.0646304	0	0	0	0	0
Blast
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BLAST of TCONS_00022157 vs. Swiss-Prot (Human)
Match: ACBG1 (Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Homo sapiens GN=ACSBG1 PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 2.888e-64
Identity = 112/227 (49.34%), Postives = 148/227 (65.20%), Query Frame = 2 
Query:    2 ITSIGTIMPEAEYKIANPDEDGSGELCFRGRMNFMGYLNNLEKVKETIDEENWLHTGDVGKIDKDGFFYITGRIKELIITAGGENIAPVPIEDEIKTELPFIGTAMVIGDKKKFLSCLLTCQVEIDLDTGLAKDNLQASAVHYLKSIGVEATKAEDLTTDMPEVLKTAIQTGIXXXXXXXXXXXXRVQKWKLLPIEFTTAGGELGPTQKLRRPHVMKMYKETIDAFY 682
            + S G ++P    K+ N D +G GE+C  GR  FMGYLN  +K  E IDEE WLHTGD G++D DGF YITGR+KELIITAGGEN+ PVPIE+ +K ELP I  AM+IGD++KFLS LLT +  +D DT    DNL   A+ + + +G  AT   ++     E +  AI+ GI   N  A +    +QKW +L  +F+ +GGELGPT KL+R  V++ YK  ID+FY
Sbjct:  493 LYSSGKLVPGCRVKLVNQDAEGIGEICLWGRTIFMGYLNMEDKTCEAIDEEGWLHTGDAGRLDADGFLYITGRLKELIITAGGENVPPVPIEEAVKMELPIISNAMLIGDQRKFLSMLLTLKCTLDPDTSDQTDNLTEQAMEFCQRVGSRATTVSEIIEKKDEAVYQAIEEGIRRVNMNAAARPYHIQKWAILERDFSISGGELGPTMKLKRLTVLEKYKGIIDSFY 719
The following BLAST results are available for this feature:
BLAST of TCONS_00022157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACBG12.888e-6449.34Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Homo s... [more]
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