TCONS_00022129 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022129
Unique NameTCONS_00022129
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022129 ID=TCONS_00022129|Name=TCONS_00022129|organism=Clytia hemisphaerica|type=transcript|length=505bp
ataaaatttttactcccggtaagttttttttttaaagcggCGATCATCGA
AAATCTTTAGGCTGACGATGTTCTTATGATACtcttattttctccaaaat
atcagcctgaatgttcttataaactgggtgctcataaaaaacgtgtaaat
taggcaaaataatttttgcaaaagaaaCGTTTATTTCCCCAAATTTTAAT
GAGCAGGAaagaatgagaaaaatatttacatGTGGGGCTTATTAGTAATC
CAAAAATATTGTTCTCTTACAAAGGCAGCTCCGCAAGAAAATGAGCATTT
GGCtgaaaaaatgtaaatagtTCTTTTGCTTTTCCTTTGGCAACCAAAAT
GTcaaagttttttcttataatcttTTAAATTCTCACAATGAAGTAATTTT
TAAATCACAGAATGTTTTTTATGACACAATCTTCACAAAAAGCAGTCATT
TACTTgtaaataataatttttataaaatgattttcatattttgataaaaa
ttttc
Run BLAST on NCBI

transcript from alignment at sc0000405:71140..71644

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022129 ID=TCONS_00022129|Name=TCONS_00022129|organism=Clytia hemisphaerica|type=transcript|length=505bp|location=Sequence derived from alignment at sc0000405:71140..71644 (Clytia hemisphaerica)
gaaaatttttatcaaaatatgaaaatcattttataaaaattattatttac
AAGTAAATGACTGCTTTTTGTGAAGATTGTGTCATAAAAAACATTCTGTG
ATTTAAAAATTACTTCATTGTGAGAATTTAAaagattataagaaaaaact
ttgACATTTTGGTTGCCAAAGGAAAAGCAAAAGAactatttacatttttt
caGCCAAATGCTCATTTTCTTGCGGAGCTGCCTTTGTAAGAGAACAATAT
TTTTGGATTACTAATAAGCCCCACatgtaaatatttttctcattcttTCC
TGCTCATTAAAATTTGGGGAAATAAACGtttcttttgcaaaaattatttt
gcctaatttacacgttttttatgagcacccagtttataagaacattcagg
ctgatattttggagaaaataagaGTATCATAAGAACATCGTCAGCCTAAA
GATTTTCGATGATCGccgctttaaaaaaaaaacttaccgggagtaaaaat
tttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012409XLOC_012409Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022129-exon-sc0000405-1491911889:71140..71644TCONS_00022129-exon-sc0000405-1491911889:71140..71644Clytia hemisphaericaexon
TCONS_00022129-exon-sc0000405-1510915933:71140..71644TCONS_00022129-exon-sc0000405-1510915933:71140..71644Clytia hemisphaericaexon
TCONS_00022129-exon-sc0000405-1575043694:71140..71644TCONS_00022129-exon-sc0000405-1575043694:71140..71644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000405supercontigsc0000405:71140..71644 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.119857	0	0	0	0.323268	0	0.462286	0.865573	1.01001	0.625533	0.364294	0.55877	0.956559	0.993396	0.544471	1.02253	0	0.64556	1.78375	0.399979	1.73827	1.69574	0.68713	0.499761	0.772112	1.14849	0.82174	0.876983	2.66064	1.62647
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top