TCONS_00022110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022110
Unique NameTCONS_00022110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1063

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022110 ID=TCONS_00022110|Name=TCONS_00022110|organism=Clytia hemisphaerica|type=transcript|length=1063bp
gaaaaatcaagaaatatattttcaGGAATATTTCAAGTTAAATAGTTTTA
CACCTTTAACGAAAGATGTATTTGAAATGCATCATGGTCTATAGTTAGTG
AATTATGGGAAATTTGTTCAGTGCATTGCATCAACGAAGAAAATATACAA
TTACAGAAGATGATGAAGACTTCACAGATGTCTCTGATGAATTACTGtgt
tcgaattctatcaaacaTTACGCATTAGACATTAATCATTTTAAACATAC
GTACGCATTCGGTATCGCACAATTTGATTCAATCGATGAATTATCCGAAC
ATTTTAAATGTATGCCAGTGCTTGGCAGTGAATCAGGAACTTCGGTGACA
CTCAGACACCCATATAAACACGACATTCCAGAACCAACTCAATATGAACA
CGTAGTCAGACACGCTGAACTTGGGAAGCAAACATCATTCAATCAAGACA
TGGCGAAACCATCACCAGATCTACATATAGCTTCAAAAGAAGGTTATCTC
ATCAAGAGAGGTGCAATTCATAAAAACTGGAAGAAAAGATGGTTTGTCCT
GCAAAAGAACTTATTAAaatattacaaagaaaaagaggaATCGACTCCAA
TTAAGACCATCGATTTAGTTGACGCAATGCATGCAGTGGAAGACTTCTGT
GATGGACGAAATAATTGCTTCCGATTAGCCATGCCAACAAGGATATTTTA
TTTTGTGGCTAGTTCACCTTCAGAAGCTAAATCATGGATTGAACTTTTAC
AGTGGAAAATTGAATATTACCAAGAAAGGAAAACGAATCAATCGAAGACT
CGTTTAAACAATTCGTTGAAAACAGCTGGCGAATTAGCGGAACATGCTGC
ATACCTTGGACAGCACTATAAGCAGTGATTGTGTTTTTATGTAGAGAAAA
TTTATTTggacaaaaattaagaacacaaCGATGCTGGCTATCGATACCCA
AAGTTCTTTCAACAACCATTTGGCGTCAAAATAACGTCCATAACGTCCGT
ACGTATACCGTCAGATAAACATTGAAATAATGTTACGAGTCAGCTAGTTA
CTGGAAATTGAGA
Run BLAST on NCBI

transcript from alignment at sc0000405:40498..46457-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022110 ID=TCONS_00022110|Name=TCONS_00022110|organism=Clytia hemisphaerica|type=transcript|length=5960bp|location=Sequence derived from alignment at sc0000405:40498..46457- (Clytia hemisphaerica)
GAAAAATCAAGAAATATATTTTCAGGAATATTTCAAGTTAAATAGTTTTA
CACCTTTAACGAAAGATGTATTTGAAATGCATCATGGTCTATAGTTAGTG
AATTATGGGAAATTTGTTCAGTGCATTGCATCAACGAAGAAAATATACAA
TTACAGAAGATGATGAAGACTTCACAGATGTCTCTGATGAATTACTGTAC
TAATATTTTTTTCAAGTTTTTTGTATATTTTGATGTCAATGTCTGAGTCT
AAATGAATGATACCTCTCTGAATTTTTACGAAAAATTCGTGGACTTTCTC
TAGCAAACTTTCAAGGGATCTTTTTTGGATTCTTAGTCCATTACAAAGGG
TCCCGTACAAAATTCTGCTTCCGCCACAATAGATTCTATTATGGGAACTG
TTTATGGGACACTTTGTATATCAAAAGGAGAGAGATTTTTCTCATATGAG
GTTCAGTCAGAAACACAGTATTTCTACTGAAAGTTTAAAATGGCGTACTA
TAACGTATTCTAGTATAACTTAGCATAGAGCCTATCTGAGCAATCTGAGA
TTGTCTCTACAGCAATAGATTTTGAAATTTCCGTTTACAGACAAACTATA
ACGTTTTTCTTACTCCTTTTTACATACAGGTGTTCGAATTCTATCAAACA
TTACGCATTAGACATTAATCATTTTAAACATACGTACGCATTCGGTATCG
CACAATTTGATTCAATCGATGAATTATCCGAACATTTTAAATGTATGCCA
GTGCTTGGCAGTGAATCAGGTTAGCTTTTACAGTTTTTTTTACATGTACG
TAGAATTTAAAAACCCTTTAACCCCCCCGGTACGTATTACGGTACTTTAT
ACAGCACTTAATCTATTAGAAGTTTTTTTTCGAGAACACAGAGAAGAAAA
TTATCACGAATTCAGCAAATGCTAACTTCAAAGTGAATTAATTCTTTGAT
GATAATTGTTGTTCAAAATATACTTTGTACTTTAGCCTATATGTTAACAA
ACTTAAGATCGTTGAAACTGTCTTTCATCTGATTGGTTGATGTCATTTCT
TAGAAGCAGACACTTAAAAGACTTTCAAATGAATGAATCAATGATAACAC
TTCATCATTTTTTTTCTATTCAAGTCTGTCAAATCACTTTTGTTTTTCTA
GGAACTTCGGTGACACTCAGACACCCATATAAACACGACATTCCAGAACC
AACTCAATATGAACACGTAGTCAGACACGCTGAACTTGGGAAGCAAACAT
CATTCAATCAAGACATGGCGAAACCATCACCAGATCTACATGTAAGTTTA
CCATTGAACTTACTACGTAATGAACTAATCAAGTCTTTTATTTAATGCCT
GAAAAAATCAATGCAACAATTTATTTAACGGTCGTGTGCAGGATTTTTGA
AAATTACTTTTTATCAATTTTTAAGATGTGTACCTGATAAGGTCGACTTT
TGGTTATTTTGGACAATTTTTAGAATGGAAATTAGAAAATGTTTCAATTT
TTCGTCTACATTTCGTCACTTTTCCTACTTTTCGGGCTGAAAATGGAATT
TTTTTTCTCGATTTTTCGTAACAATTTTTCCGAACATTCATATCTGACAG
GGTCATCTTCTCAAACTCCCCCCCCCCCATACTGGGATTTCGTCACACTG
AGACACATAAAATATACAGTTTTTTCTATTTCTCACTTTAGATAGCTTCA
AAAGAAGGTTATCTCATCAAGAGAGGTGCAATTCATAAAGTAAGCATTCT
GAACAGAGGGTGTTACAGACACATTCATACCTCGGCCCCACTTGAAAATG
TGTCCAAAATTACGTTCCCGATGGGAAAGATACCCTATAATTTCAGCCCC
ACTGGGAGTTCATTCCTTTAAGAAAGTGACGTGCTTACTGCACGGAGTCT
GATGTAAAAACTGATCTTTCGATATAAGATTACGGGCTCTATACAAAATG
AATAAAATGCAGACCAAAGTGGTCTTTATAATATATCACAATCCCCATTC
GAAATTCAATACGTAAGAAATTGCACTTCAAACTATCCCAACTGGATGTT
TTTAACTTGGAACAATATAATTTCTATGCCTGCTGTAGAGAAAAATTTCA
CTGAGGTTGTGAGACAGGGGTTTATCTGAAACTCATCTGGCAACGATTGT
GAATAAACTATTTCTTTTGAATAATTTTTTCCGAATTTCTCTGTAGTTCG
AACTATAATAATGACCTACTTAGATTTTAAAAATTTATTGCAAAAGACAC
ACAAAGCATTTTTAAATTTTAAGAAAAGTTTTACACTCTTGATATCATTT
TTAAAATTCATTGCTTATTTTCTTAGAACTGGAAGAAAAGATGGTTTGTC
CTGCAAAAGAACTTATTAAAATATTACAAAGAAAAAGAGGTTAGTCCTCC
CTTTGTTGTGCCTAGACCTTTAGTTCGTCCAACGAACATTGTGCCAAATC
TATTTTCTGTTTAAGCAGTCATTTGAATCCATGTCATTAAAATGACACGT
GTAATGCGTAAGATAGTGGTCAATAAAGTCGTTGCATAAAGGCCAGTCTC
CACTTTCGCGCGAAGTGAGCGAAAATTTTTAACGTTTTTGTAAGGTTATT
GGTCGGTTGAAAAATGAAGCAATTCCATTGGCCAAAATTGACGTAACGGT
TGAAAAAAGTTGAGCTTTCTGCAACTTTTTTTTGTTCACGCGAAACTCTT
TTATGACGTAATCTTTTCTTTAGGCAAAAAAGGTTGAGAAAAAAACTGTC
GCCCATTTCGCACGAAAGTGGATACCGGCCTTTAGAATTGCAATATGACG
TCACTTAGTTTAAGGAACTTAGAATGCCCATCGATATTAATCACATGCCC
AAAATAAAATGGAATTCAATTTTTTCACCAGTATTTCCTGACCAGGTAGA
TATTCAATGACTTGAGTTCTTGGCCTCACCGTATATGAAAATCTTTGCAA
TTTGTCTGAAATTTGGTGGAGTTTTCCTTGGATTTTCCTTGGATTTTCTT
GGATTATTTGAAACGTTTTTTAAGAAAGTCAAGCTAAAATTTCATTATTT
TTAATTTCAGGAATCGACTCCAATTAAGACCATCGATTTAGTTGACGCAA
TGCATGCAGTGGAAGACTTCTGTGATGGACGAAATAATTGCTTCCGATTA
GCCATGCCAACAAGGATATTTTATTTTGTGGCTAGTTCACCTTCAGAAGC
TAAATCATGGATTGAACTTTTACAGTGGAAAATTGTGAGTGTTGATATTT
TTTTCAATAATGCATTGTCGTTTGAGCTATAATAATTAGTCTGGTCTAAG
GGGTCGATATGACACAGTTGAGTGGAGTGACACACAGGAGTTGGGCTAGT
AAGTGGGCTAGTAACCACATGCTTTATAAACTGAATACTGCTCAAAGAGA
TCAAAACTAGTGCAAAACTTCAAAATAACTTCCTTAACATCCATATTAAG
TTTTTTTTAATATTGAAGCAACGTTGCGTACCAGCTTGTAACTCCCTATG
TTACCTAGCAATTATATTGATTAAGAACTCTATTTTTTTTACTACCTAAT
CGGCCCTTTTGACACCAGCCTTATTACGCTGGCGTAATAAGGGCTAGCGT
AAAAAGGGTCGATAAGGTATAAACCTGGGAAAAGGTTTGTTCGTTAGTTC
TTCTTTAATTCGCTATTTTATCATTGGTTATGAATTTGTGTTGGGTTAGA
GGAACCAAGCTGAAACAGAACGTCAAATCTTAATTTTTTGGTTTTGAATT
ACTGTGACTTTAGTTTTAGACAAATATTGTCTATATATAATTTGCTTAAA
CATCCGTTTTTTTTCTTAGGAATATTACCAAGAAAGGAAAACGAATCAAT
CGAAGACTCGTTTAAAGTAAGTGGGCCATACTGTTACTTTAGTAAGGCTT
GCAACACAACAATTGTTTGGTCACCTAGTCACATCAATATTTATCTGCAT
GTACTAAAAAGTTTAAGTGGCACGTGAAAATATTTTGAATAAAATGAAAG
ACCTAGGGATGAGCTTTAAACTAGTGGGTTCCCAGCTGGCACACAACGTT
GTTTTAACGTTCATCTAACATTATATGGACGTTGTGAACATTAGATTAAC
GTTGAAACGACGTTGTGTGCAGGCTGGTTTGGGAATTTTTACAGCTTAGT
ATTCCGGATAAGATTCTTAAAATTATAATATTTTGCATAAAGCAGATTTA
GCAGATTTCAGTAAAGTTTTCCTATGGGAAGGAAATGAAGGTCTGCACCC
TGTTTTTTGACAATTTTCTTGTCTTTAGAAAGTTCTACCCATAAGAGAAA
GAGTGAAGTTTCCTTTTCTGCTTTGCACTGCACTTTCAAACTGCAACTGT
ATTGCACACAAAACATATCACAAAATGTCATCAAAAATTATGCATGCGTA
TGCGTCAACCTGCAAATGTACCTAAACCGCTATACTTTTTCAAGAATATG
ATACCTCATCCATAGCATTTTTTACTTAGAACCACACTCAAGTATACCGT
GAGTATCACAGTGCATGAATTTTACACTGTGACGACAGATAAATTTAAGA
GAAAGCTAAACTGTGACGACAGATAAATTTAAGAAAAAGCTAAACTGTGA
AGACAGATAAACTTAAGAGAAAGCTAAACTGTGACGACAGATAAACTTAA
GAGAAAGCTAAACTGTGACGACAGATAAATTTAAGAGAAAGCTAAACTGT
GACGACAAATAAATTTAAGAGAAAGCTAAACTGTGACAACAGATAAATTT
AAGAGAAAGCTAAACTGTGACAACAGATAATTTTAAGAGAAAGCTAAACT
GTGACGACAGATAAATTTAAGAGAAAGCTACACTGTGACGACAGATAAAT
TTAAGAGAAAGCTAAACTGTGACAACAGATAATTTTAAGAGAAAGCTAAA
CTGTGACGACAGATAAATTTAAGAGAAAGCTACACTGTGACGACAGATAA
ATTTAAGAGAAAGCTAAACTGTGACAACAGATAATTTTAAGAGAAAGCTA
AACTGTGACGACAGATAAATTTAAGAGAAAGCTACACTGTGACGACAGAT
AAATTTAAGAGAAAGCTAAACTGTGACAACAGATAATTTTAAGAGAAAGC
TAAACTGTGACGACAGATAAATTTAAGAGAAAGCTAAACTGTGACGACAG
ATAAATTTAAGAGAAAGCTAAACTGTGGTGCTCACGGCTCACGCTAGCTC
AATTACCGAAACCCAAAATAGATCAATCACACTTTCAGCATGAATATACC
TTATCATTTAATATTCTCTGTTTTTCACTTTGACGGAGTTCCAAATTTAC
ACTTCTATATCATCAAATCAAGGCTCAGGTTTTGCTATAATCATTTGCAC
ATAAATCTTTTTTATATCTAGAGCATTGAGTCCAAAGCAAAAGGCTCTAA
GAATCTCCGACCTTTACTAAGCAAGAACAAGTGAAGCCTTACGATTTGAT
GCAAGGATTGAATTTAACGTTTTCTTTGTATTCACACGGAACATTTTTCG
AAATTAAAATAGCTCGAATTTTAAAATAAAATATTAAAAATGCGTTCTAA
ATAACATGATCAAAACAAAATAATTGATGACGTTTTGTTATTGTTTTGCA
GCAATAATGGTAGCACCAGTAGTGCTGGTAGTCAAGGCAACAACGAGAAC
AACACGGCAACGTCAGGGTGGAACCAAAACGATTCTCTGTTTGTCTCTTT
TCCAGCAATTCGTTGAAAACAGCTGGCGAATTAGCGGAACATGCTGCATA
CCTTGGACAGCACTATAAGCAGTGATTGTGTTTTTATGTAGAGAAAATTT
ATTTGGACAAAAATTAAGAACACAACGATGCTGGCTATCGATACCCAAAG
TTCTTTCAACAACCATTTGGCGTCAAAATAACGTCCATAACGTCCGTACG
TATACCGTCAGATAAACATTGAAATAATGTTACGAGTCAGCTAGTTACTG
GAAATTGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012399XLOC_012399Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022110-exon-sc0000405-1575043694:46262..46457TCONS_00022110-exon-sc0000405-1575043694:46262..46457Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1575043694:45689..45828TCONS_00022110-exon-sc0000405-1575043694:45689..45828Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1575043694:45167..45306TCONS_00022110-exon-sc0000405-1575043694:45167..45306Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1575043694:44719..44766TCONS_00022110-exon-sc0000405-1575043694:44719..44766Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1575043694:44069..44131TCONS_00022110-exon-sc0000405-1575043694:44069..44131Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1575043694:43224..43397TCONS_00022110-exon-sc0000405-1575043694:43224..43397Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1575043694:42592..42638TCONS_00022110-exon-sc0000405-1575043694:42592..42638Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1575043694:40498..40752TCONS_00022110-exon-sc0000405-1575043694:40498..40752Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1510915933:46262..46457TCONS_00022110-exon-sc0000405-1510915933:46262..46457Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1510915933:45689..45828TCONS_00022110-exon-sc0000405-1510915933:45689..45828Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1510915933:45167..45306TCONS_00022110-exon-sc0000405-1510915933:45167..45306Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1510915933:44719..44766TCONS_00022110-exon-sc0000405-1510915933:44719..44766Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1510915933:44069..44131TCONS_00022110-exon-sc0000405-1510915933:44069..44131Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1510915933:43224..43397TCONS_00022110-exon-sc0000405-1510915933:43224..43397Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1510915933:42592..42638TCONS_00022110-exon-sc0000405-1510915933:42592..42638Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1510915933:40498..40752TCONS_00022110-exon-sc0000405-1510915933:40498..40752Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1491911889:46262..46457TCONS_00022110-exon-sc0000405-1491911889:46262..46457Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1491911889:45689..45828TCONS_00022110-exon-sc0000405-1491911889:45689..45828Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1491911889:45167..45306TCONS_00022110-exon-sc0000405-1491911889:45167..45306Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1491911889:44719..44766TCONS_00022110-exon-sc0000405-1491911889:44719..44766Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1491911889:44069..44131TCONS_00022110-exon-sc0000405-1491911889:44069..44131Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1491911889:43224..43397TCONS_00022110-exon-sc0000405-1491911889:43224..43397Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1491911889:42592..42638TCONS_00022110-exon-sc0000405-1491911889:42592..42638Clytia hemisphaericaexon
TCONS_00022110-exon-sc0000405-1491911889:40498..40752TCONS_00022110-exon-sc0000405-1491911889:40498..40752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000405supercontigsc0000405:40498..46457 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.537821	0.694516	0	2.11685	1.07585	0.0551977	1.95768	1.5081	0.493786	0	0	0	1.24541	1.50834	0	0	0.862914	0	4.42461	3.68892	0.297826	0.549704	0	0.315825	0	1.07073	19.6009	15.1097	0.0263876	0
Blast
[Close]
BLAST of TCONS_00022110 vs. Swiss-Prot (Human)
Match: DAPP1 (Dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide OS=Homo sapiens GN=DAPP1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.954e-37
Identity = 73/206 (35.44%), Postives = 116/206 (56.31%), Query Frame = 3 
Query:  144 YTITEDDEDFTDVSDELLCSNSIKHYALDINHFKHTYAFGIAQFDSIDELSEHFKCMPVLGSESGTSVTLRHPYKHDIPEPTQYEHVVRHAELGKQTSFNQDMAKPSPDLHIASKEGYLIKRGAIHKNWKKRWFVLQKNXXXXXXXXXXSTPIKTIDLVDAMHAVEDFCDGRNNCFRLAMPTRIFYFVASSPSEAKSWIELLQWKI 761
            Y + + +E     S  +   +S+KH+   + +  +++ FG  +F S+ +  +HF   P++GSE+GT + L+HPY   + EP+ YE V  H  +  QT   +D   P+    + +KEGYL K+G + K WK RWF L +N LKY+K++    PI+ +DL +      D+   R NCF L  P R FY  A +  EA  WI++L+WK+
Sbjct:   58 YLLRDSNETTGLYSLSVRAKDSVKHF--HVEYTGYSFKFGFNEFSSLKDFVKHFANQPLIGSETGTLMVLKHPYPRKVEEPSIYESVRVHTAM--QTGRTEDDLVPTAP-SLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKL 258
The following BLAST results are available for this feature:
BLAST of TCONS_00022110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DAPP12.954e-3735.44Dual adapter for phosphotyrosine and 3-phosphotyro... [more]
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