TCONS_00022101 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00022101
Unique Name	TCONS_00022101
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1172

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000405:211104..215851+

transcript sequence

>TCONS_00022101 ID=TCONS_00022101|Name=TCONS_00022101|organism=Clytia hemisphaerica|type=transcript|length=1172bp
aaaaagaTTGACAAAAGCTGACATATCACTTATACACAAGTTGCAAATTA
TTTGGTGGTTTATGATATTCTCTCAAACAGCTTAAATGGAAACTGAAAAT
TTGGAAGAGTTCGTTGATCTTGAATTTTGCAGTGCATTGAGTGACAAGGG
TTAACAGAGGACGATCACATGACTTCAACACATGCAATAAACAGTTGTCC
AATAGAACCAGAAAATGACGATGACACAGTCGAGACTCCATTAAAgcaga
aaatcattaaaaatcggattttatCGGATTCAGAAAGCGACGAAAATGAA
TCTGATCGGGAAAATGCTGATGACATCAAAGATTCATCTAACCAGaatct
aaacaaaaataaaaaccgGATTTTGTCGGATTCAGAAAACGGGGAAAATG
AATCCGATCGGGATGAACAAGAAGTTCCAGCGATGTCCGATAAAAAATCA
TCAGATgataagattgaagaattcggATCACAAAAAGAATTGGAGAAGTC
ATTGGCTGAATGTTCACAATCTGATGAATcgaagaaagaaaaatcatcTT
CCAAAAAGTCAGGAAAGCGCTCCTCCAGCTCTTGGGTTCAATGTGATACT
TGTGAAAAATGGCGATGTGTGGATACAGTTGATGACATTCATTCGTTGGC
TAACGGCAAATGGGTTTGTGCTATGAATGATGACGATAGACGTAACAAGT
GCGAGCTGTCACAAGAAAGCATCCCGGAAAGTGACGAAGAAGTTGATGAA
TCCTCATACGTCACTTATAAACCGGGAAATCTCGTCCTCGGAAAAATGGC
CGGATACCCATGgtggCCAGGGATTATCGAAGACGATCCAGACTTTGAAA
GTTTCTTTTACTTGGAgaacaaaaatgataaaattgctGCTAGTTATCAC
GTGACATTTTTCGACAAAGATGTTTCACGAGCTTGGTTAACTGATTATTG
CGTCCGACCTTTCACTGGGAAAGAGGATCTCAAAGATCTCGGCACCATGT
CGTTTTCCGGAAAGAATTATGCCCGTGGTGTTTCAAAGGCTATTGAAGAT
GCTAAGAAAGCGCTTGGATATTCACCAGAGAAGCGAGTTGACAAATATGG
CTTTTTGAAGAGGTTCAAGAACAAAAGAGGTTCTAAGAAAGACAGTGACA
AAGGTTTGGAGGAAGATTGGAC

Run BLAST on NCBI

transcript from alignment at sc0000405:211104..215851+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00022101 ID=TCONS_00022101|Name=TCONS_00022101|organism=Clytia hemisphaerica|type=transcript|length=4748bp|location=Sequence derived from alignment at sc0000405:211104..215851+ (Clytia hemisphaerica)
aaaaagaTTGACAAAAGCTGACATATCACTTATACACAAGTTGCAAATTA
TTTGGTGGTTTATGATATTCTCTCAAACAGCTTAAATGGAAACTGAAAAT
TTGGAAGAGTTCGTTGATCTTGAATTTTGCAGTGCATTGAGTGACAAGGT
ACAAGAATCTCGTATTATTCATTATGCTCCAAGTTCAAGTCATGTAGAGT
TTACCCAGACTTTCCAAAAGTCCAGTAACTATTACGTATAGAAGGGTCGA
TTCTTTAGGGGTAGCTTTGAAAATAGTAACTAAAGTATTCAATTCCTCCT
TTTGAAGTCCTTTTCTTTTGAAGCTGTTTGaaggccttttcataaaatgA
GTTATTTTTAGTGGAACGACTGCCTCTTTTTAAAACCATTACCatggtga
ttttttaaatagaGTGAACTCcttatgaaatatattttgaaaattaggta
AGCGTTGCTGatgacgtaatttataaaaaggtgTATTGCCTGAGAGATAT
TCCACGTTGTTCGATTTTATACCCCTAATCATTTTCCTACTTCTTTTCTA
GCTTGAAAAACTTAGTGATAGTTTAGTCGAAGGAGAAACACTCGAGAAAG
ATTTTAAGAAAGGTATGAAGCTTATTGAATCATTCTGAAGTTCTTACTAG
CTTTTGATATGTTCATTATATGTTTAGCTAGTCCTTCTATGTCTANACTG
AAGTTCTTACTAGCTTTTAATATGTTCATATTATTATATGTTTAGCTAGT
CCTTCTATGTCTACAGTTTCTCTAAGTCAGAATCaggttttttaagaaat
ttaggAAATTTGTGATAATTTTGATGATCGCTCATTTTTTATATAATGAT
CCAAAATTTACTAACTTCATCCCTGTCCTCAACAATCCGTCCGTTTCTAC
TTAATAACAATATGTTATTAAATTTAGGCCCGCCATGTTATCGGTGTTTA
ACTTATAGGAATCTTGCTTTTGTACACTGGATATCCCTTTCCTCCTACTA
TGAATGTaaaggtttttcatgttttattaaGTTACgtcattatggaagca
aacttCGAATCTGTAGGGGCGGTCCTTTACGTTAATCGAACGTTCGCTTC
CAAAATGGCGGAAATGACTTAACAAAACGTGAAAAACTTCTACAGTGTgg
tctttttaaccaatcatgAACTTGTATTGTTAAGGGTTAACAGAGGACGA
TCACATGACTTCAACACATGCAATAAACAGTTGTCCAATAGAACCAGAAA
ATGACGATGACACAGTCGAGACTCCATTAAAgcagaaaatcattaaaaat
cggattttatCGGATTCAGAAAGCGACGAAAATGAATCTGATCGGGAAAA
TGCTGATGACATCAAAGATTCATCTAACCAGaatctaaacaaaaataaaa
accgGATTTTGTCGGATTCAGAAAACGGGGAAAATGAATCCGATCGGGAT
GAACAAGAAGTTCCAGCGATGTCCGATAAAAAATCATCAGATgataagat
tgaagaattcggATCACAAAAAGAATTGGAGAAGTCATTGGCTGAATGTT
CACAAGTGAGAGACGTTCTTAAAACTACTGAAAGTTTAAAGCCTGCCCAA
AATATTCTGATTAGTGGTTGGTTATACTTATATAAATTACTCAAAGCTTA
TTATTTTAGAAGGAGAAAAATCAATAATTTCACTCCAATATGACGTCtct
tgagaacggaccgagttCAAAACATGtcgagaaaaatcaaaatataatag
ctgCATTCTTTTTCACTGTTCAACACACTCCAATATGATATAACGAATGG
TACTTTTATCGACTTTTTGGGAAACGACTTTTATAAATTTAGAGGGGTCA
GTGAATTAAaacacttgaaaaaaattttcattatttaaaaGCGATGGAAA
CTTAGTGGGAATTTGTAATTAGTTTTTAAAAGTCTGTAAAAAGTCTTAAG
CTTCAGAGGTTCTTACTTCTTCAGATGTAAAATTATACTAAAACTTATCT
CGTAGTCTGATGAATcgaagaaagaaaaatcatcTTCCAAAAAGTCAGGA
AAGCGCTCCTCCAGCTCTTGGGTTCAATGTGATACTTGTGAAAAATGGCG
ATGTGTGGATACAGTTGATGACATTCATTCGTTGGCTAACGGCAAATGGG
TTTGTGCTATGAATGATGGTGAGAATTGTTCTTCGAATATTTGACGAATT
CTCGCCATTTCGTAGTTTTTGGTTTTAGAAAACTAGATCTTTTTGCCCAA
CTTTTCTACTTTATTTTAACCAGTTTCGATTAAAGTATATTTGCTTTAAG
TTTGAACTCTTTTTTTGCTATCATATGGAAAACACTTTCTAGGGAATTCT
TTCAACCACGCTGAGATGGTTGTAGCAAGAGATTGCAGCAAAAGAGAGTG
GACACTGAAAGTGAATTGACTTTAATTTCTAAGTCTTTAAGTAAGTAAGA
AAGCTCATTTTTTGGCTTTCTATAGAGCCGGGAGTAaggtaggctacgtc
atatcttccttcgtttcaaGCGTAAAACGCCTACTCTGCGTAAgacctaa
aagcctggagctgtctattgtgtagactagggGTAAGGGAGCCCTTCCCC
ATATTTTGATAACCCATCTTTGCCTTTTATAGACGATAGACGTAACAAGT
GCGAGCTGTCACAAGAAAGCATCCCGGAAAGTGACGAAGAAGTTGATGAA
TCCTCATACGTCACTTATAAACCGGGAAATCTCGTCCTCGGAAAAATGGC
CGGATACCCATGGTGAGTTTTAAAAAACATTATAGAAAATCGATCATCGA
GATTTTCCCTTAAAAATCTCGATGATATACATTGCAGTGACTATTACTCA
AAAATGACTATGTTTATTTCCTGTAGAATTTCCGTTAGtagaatttttat
aaaaaaagttcaagTCGTGTCCATGGTCAAAAACGTCAACAGTCTCGATA
AaacgtctttttttatttctgatattttttacCCTTAACAAGACTTGGAC
AACTTTTAATTAACTAAttctactttaatcggattaaatttcgcgtgatt
aaatttcgcgagcgaaaaaaatcgcgaaattttcgcgagtcagagctttg
aaaaatttcgcatGGATTTAGTTTCGCGAATATgcctgaaaacagctgaa
aatagccatttttttgCCACAAATGGAGACTTTGGACTGCTTTCTCCTCC
Aaaattttgtggtggatttaatttaatttcgcgagtcaggaatctcacgc
gttttcgcgagttttaatggcaaaaattcgcgaaatcgcgaaattcaatC
TCGCGAAAGTTAACCCGATTAAAGtattcgttctttttttttcaggtggC
CAGGGATTATCGAAGACGATCCAGACTTTGAAAGTTTCTTTTACTTGGAg
aacaaaaatgataaaattgctGTAAGAATGTCTTGAACAAATTAGGGTGC
TGGTATTCCACTAATGTGTTGGTTTTTAATACTACCTGGAGTTTTGGAGA
GCCCTAAGAGACTATGACCAAataattttggtcaaaaaattgatcaGGTC
TTAATTGAATAACACAATATATCCAACAACGCGTTTCAATCAATTTCTTT
GGTCTTGAAAAAAGCTCTTTTATACTTTCGCACATTACTTTTCCTAACCG
TAATAAATTAAACTTCTTGTTATAGAATTTGGTATTACCTTATCAGTCCT
CATTTAGTGCGGGCCTCTCTTACCCCGGCTCTAACCACGCTAGCGACGTA
AAACTATCACCAATAAGGACTTAAGAACCGATGTGTTATAGAATTCGGTA
CTATATGTATTATTCACGATTTCCAGGCTAGTTATCACGTGACATTTTTC
GACAAAGATGTTTCACGAGCTTGGTTAACTGATTATTGCGTCCGACCTTT
CACTGGGAAAGAGGATCTCAAAGATCTCGGCACCGTAAGTatagtatttt
tattttttaatacttGATAATAGGAAAACATAAGCATGAGTCAATAACTT
TTGCAACGATGTACGTGGAAAAGGTTTGGAAGCAAACAAACAATTCGTAG
TACTTTTTTACttattgattttttgtttactaTACATAGATGTCGTCTTC
CGGGGAAAAAAATATGAACGAAAACAAGCAagatacaaaaataaatttgg
aaCGCACACCATTTTACAGAGCAGACAGCACCAAGGCCCTGTTTTAGTAA
TCaattgtttctctttttttgatACATAGATGTCGTTTTCCGGAAAGAAT
TATGCCCGTGGTGTTTCAAAGGCTATTGAAGATGCTAAGAAAGCGCTTGG
ATATTCACCAGAGGTTTGTGtacattttaaagatttcttttgtagtGTGA
TAGAACCAAGTTACGTTTTAAGTGAAGctgaaaatttggctgaatcttTT
TGCATCTTGTTGTGGAACCTCCAGAAATATTCTACACCAATCAACTActt
tgatgatgttttttttttcagtagaATCTCTTATAAAGTATGGTTGATTG
AAACAGGAATTTAGATTCGATATAAgctttttctttaaagttaaGTTAAA
GCTTTGTTTTGCTATAAGCATAGACTTTTTTGGGTTGTTGGTTTGGGCAT
CATTGAAAGATTATCTTCAAGATCTcttgattttaaatttcaatttcaca
TTTTAGAAGCGAGTTGACAAATATGGCTTTTTGAAGAGGTTCAAGAACAA
AAGAGGTTCTAAGAAAGACAGTGACAAAGGTTTGGAGGAAGATTGGAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012394	XLOC_012394	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000405	supercontig	sc0000405:211104..215851 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.49988	1.88247	0	0.530527	1.93027	2.33303	2.8248	4.44368	2.8873	2.08473	4.21769	2.045	1.89089	1.49209	2.26658	3.36755	2.12015	3.37152	1.44902	1.10057	3.04486	1.69013	3.05035	2.5101	7.75002	0.0349473	0.162314	0.48521	1.31721	1.9164

Blast

[Close]

BLAST of TCONS_00022101 vs. Swiss-Prot (Human)
Match: ZCPW1 (Zinc finger CW-type PWWP domain protein 1 OS=Homo sapiens GN=ZCWPW1 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 3.799e-26
Identity = 66/191 (34.55%), Postives = 103/191 (53.93%), Query Frame = 1

Query:  583 WVQCD--TCEKWRCVDTVDDIHSLANGKWVCAMNDDDRRNKCELSQXXXXXXXXXXXXXXYVTYKPGNLVLGKMAGYPWWPGIIEDDPDFESFFYLENKNDKIAASYHVTFFDKDVSRAWLTDYCVRPFTGKEDLKDLGTMSFSGKNYARGVSKAIEDAKKALGYSPEKRVDKYGFLKRF--KNKRGSKKD 1143
            WVQC    C KWR +    D   L +  W C  N D + N+C++ +E+    + +V    Y +Y PG+++  K  GYPWWPG+IE DPD   +F   +  D + + YHVTFF + VSRAW+    ++ F  +E   +L  M     + ++ +  A+  A++A   S ++RV+ +GF  RF   N  G +KD
Sbjct:  256 WVQCSFPNCGKWRRLCGNIDPSVLPD-NWSCDQNTDVQYNRCDIPEETWTGLESDVA---YASYIPGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHVTFFGETVSRAWIPVNMLKNF--QELSLELSVMKKRRNDCSQKLGVALMMAQEAEQISIQERVNLFGFWSRFNGSNSNGERKD 440

The following BLAST results are available for this feature:

BLAST of TCONS_00022101 vs. Swiss-Prot (Human)

BLAST of TCONS_00022101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZCPW1	3.799e-26	34.55	Zinc finger CW-type PWWP domain protein 1 OS=Homo ...	[more]

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TCONS_00022101 (transcript) - C. hemisphaerica