TCONS_00022099 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022099
Unique NameTCONS_00022099
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022099 ID=TCONS_00022099|Name=TCONS_00022099|organism=Clytia hemisphaerica|type=transcript|length=449bp
GTCCTACTAGAAGAAAAGCCTCCAGTAAAAAGatAAAGACTGATAAAGAT
GAACATGTGCAAAGTGAAGATGAGACACCGATTCAAGAAGTagaagaaaa
aatcaacaaTAATGAGGATGAAGAGGAAGATTTTGAAGAATTCTCCACAA
ACGATTATCAACTATCAGAATTGGAATTACTCagaaaagaaaacatgaaa
aagaattttcagctGTTTGAAGAATTCCAAATAAACAAGGTAAAGGATGA
AGTAAAAGAACTGGCAAGACCTAAGTTAAATGTTGTCGGTATCAAGAGAG
AAAAGAGAAAAGCCACCCAAAGAAATTTTACCAAGAAGAGTATCATTAAG
AATTCGAAAGCTTGAAGCACATGATTCCATAAACATTGAAGATTACGTTC
CCTTATCTACAtttcaaaattaccaaaaacaaCAGCAACATAATTATCa
Run BLAST on NCBI

transcript from alignment at sc0000405:202290..204361+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022099 ID=TCONS_00022099|Name=TCONS_00022099|organism=Clytia hemisphaerica|type=transcript|length=2072bp|location=Sequence derived from alignment at sc0000405:202290..204361+ (Clytia hemisphaerica)
GTCCTACTAGAAGAAAAGCCTCCAGTAAAAAGGTAACCGTTTATTGTTAC
AAATTTTCAcaaattgttcctataaaattaggctacgtcatatcttcctt
cgtttcgagcgtaaaactcctactcttcgggctatgagcactcctcttgt
tttgaatattgaaattccccagataaatcgcatgcgcactgaggttttaa
tgaaacaatagagagtttcgaaacctaagccaatcagctgtgttttaaac
attcttttatttaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNtgataaa
catcttttgtgaatgttgtctattatgtttaaacctattaataagcaatt
cccggtgggggtcactagtggccgcctatagcagtgcctatagaccaaga
gtaaggcctaaaagcctggatctgtctattgcgTAGACTATATAAAATTG
GCTTATTTctaaattctttcatttcaaatacgttttgaaatttgaagCCT
TCAGGTCGTTAATGAAGTTATTTGTTACTACTGTATGAtgaattctttca
ttttattctcttcttttgttctttttttcttcaagatAAAGACTGATAAA
GATGAACATGTGCAAAGTGAAGATGAGACACCGATTCAAGAAGTagaaga
aaaaatcaacaaTAATGAGGATGAAGAGGAAGATTTTGAAGAATTCTCCA
CAAACGATTATCAACTATCAGAATTGGAATTACTCagaaaagaaaacatg
aaaaagaattttcagctGTTTGAAGAATTCCAAATAAACAAGGTAATAAA
GTAAGACGATCTTGGAGAATGGTCTGATTGTATGGCTTTATTCATTTTAA
GAttgtgAAAGGTGAGTATTAACAAACTGACTTCGTTCAAAACTGGCATT
ATTTACTATGCCAGGGTGCAAAATCTTGTTCAAAGTTGACATTATTTACT
TTGCTAGGTAAAGGATGAAGTAAAAGAACTGGCAAGACCTAAGTTAAATG
TTGTCGGTATCAAGAGAGAAAAGAGGTATTTATTGACTTTTTACATGGAC
AGAATTCCAACTACTTGTGAATATCCATTCTCTAACATATAAAAGGGATG
CCATTtgtaaaacaagaaaaattaaaaattcactaaattACAAATCATAA
GACTGATAGACCCTTAAGAATCATATTACTTTTTTGTGAGTAAACGATCT
ACAAATTAAGgtcaattatttttatttttctattcttttgaaacaattta
tatttttaacgcCTAGAGAAAAGCCACCCAAAGAAATTTTACCAAGAAGA
GTATCATTAAGAATTCGAAAGCTTGAAGCACATGATTCCATAAACATTGA
AGATTACGTTCCCTTATCTACAtttcaaaattaccaaaaacaaCAGCAAC
ATAATTATCATGTAAGTACAATACTGAATAAAAgttaaaattctcaaatt
taaTAAAGTATTTCTAAAGGGTTCTCCTTGACAGTAACCTGAAATCAGAT
TGTAATTATGTTTTCTGCCTGCACTACattaaagctctaaagggatgggt
gttATACAAACAATCTGATAAAATATGCTATctcaaatttgaaaggactg
cACTCGTCTAAttaggactgggaatgacaacaaagttgagTGATTGTGTT
TAAAAATAGGGCGCTGTATCAGGAAAATTTGGTGtttgactttccggcgc
acaacaagattcttgttgtagaattttccgcgggaggactattttcctca
gatggttaattttcaagggccttcagaggtttaccatgcccttaagaaaa
ttatgaccagcGGTTATCAGGTTACTTGACAGGGACTGagaattatttaa
aattttggaacTTTACCCTTCAGTTTTTTATCTAATAAGTCACTGTCAAT
CCTTGCTGCATGGTATAAGTAATTCTTTTGAGATTGTCTAGACGATACAA
TTTTGTATCTCTTTTGTTTGGATTGAATAGGAAGTTTGTTTCTTTCAGAA
CGTTCTGGGGCAATGACCAGAGTATTTTCCTTAACTACAATTGATAgtgt
attttattatttttcttttaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012393XLOC_012393Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022099-exon-sc0000405-1491911889:202290..202321TCONS_00022099-exon-sc0000405-1491911889:202290..202321Clytia hemisphaericaexon
TCONS_00022099-exon-sc0000405-1510915933:202290..202321TCONS_00022099-exon-sc0000405-1510915933:202290..202321Clytia hemisphaericaexon
TCONS_00022099-exon-sc0000405-1575043694:202290..202321TCONS_00022099-exon-sc0000405-1575043694:202290..202321Clytia hemisphaericaexon
TCONS_00022099-exon-sc0000405-1491911889:202875..203081TCONS_00022099-exon-sc0000405-1491911889:202875..203081Clytia hemisphaericaexon
TCONS_00022099-exon-sc0000405-1510915933:202875..203081TCONS_00022099-exon-sc0000405-1510915933:202875..203081Clytia hemisphaericaexon
TCONS_00022099-exon-sc0000405-1575043694:202875..203081TCONS_00022099-exon-sc0000405-1575043694:202875..203081Clytia hemisphaericaexon
TCONS_00022099-exon-sc0000405-1491911889:203247..203314TCONS_00022099-exon-sc0000405-1491911889:203247..203314Clytia hemisphaericaexon
TCONS_00022099-exon-sc0000405-1510915933:203247..203314TCONS_00022099-exon-sc0000405-1510915933:203247..203314Clytia hemisphaericaexon
TCONS_00022099-exon-sc0000405-1575043694:203247..203314TCONS_00022099-exon-sc0000405-1575043694:203247..203314Clytia hemisphaericaexon
TCONS_00022099-exon-sc0000405-1491911889:203558..203698TCONS_00022099-exon-sc0000405-1491911889:203558..203698Clytia hemisphaericaexon
TCONS_00022099-exon-sc0000405-1510915933:203558..203698TCONS_00022099-exon-sc0000405-1510915933:203558..203698Clytia hemisphaericaexon
TCONS_00022099-exon-sc0000405-1575043694:203558..203698TCONS_00022099-exon-sc0000405-1575043694:203558..203698Clytia hemisphaericaexon
TCONS_00022099-exon-sc0000405-1491911889:204361..204361TCONS_00022099-exon-sc0000405-1491911889:204361..204361Clytia hemisphaericaexon
TCONS_00022099-exon-sc0000405-1510915933:204361..204361TCONS_00022099-exon-sc0000405-1510915933:204361..204361Clytia hemisphaericaexon
TCONS_00022099-exon-sc0000405-1575043694:204361..204361TCONS_00022099-exon-sc0000405-1575043694:204361..204361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000405supercontigsc0000405:202290..204361 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	7.62038	0	8.67905	4.62772	4.58918	4.67027	2.96505	2.33762	5.67394	1.9311	0	0	0	0.794178	0	0.665832	0.937566	0.639563	2.86854	0	0	0	10.2503	17.0625	2.11186	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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