TCONS_00022094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022094
Unique NameTCONS_00022094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022094 ID=TCONS_00022094|Name=TCONS_00022094|organism=Clytia hemisphaerica|type=transcript|length=461bp
ctgGGCatacatttttaggcttagagCTCAAAATGTTGATAACAAgcaaa
gttttggatgttcttataaaaaatgtgtaaaggGCAGTTACATTTTACAA
TTAAACCGATCAACATATATCATGGCCATAAAAAATACcgaaaaataatg
ataatttaAATACTCCCTCCCCTTGTAGCATCTATAAAAGAtatcaaaaa
attaaagaaaatatttaaaaaatgataaactGACTATAgtacaaaattac
aaaattgttcGCTGGCAATAAAATATGATACATCTAAATTGATTGGAAAC
GTCAAGTCTCCTGATTCTTATAGTAGTCctagaaaagtaaaaataaaaac
aattgtttAATGACATGTTCTATGAGCCAACAACCTTAGCTTGCTTACCT
AGTTTggttgaaacaaaaaaaacgtttctAGCTACCCCGTGTTAAGAGTT
CGGAGTTTTTT
Run BLAST on NCBI

transcript from alignment at sc0000405:88199..88721+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022094 ID=TCONS_00022094|Name=TCONS_00022094|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at sc0000405:88199..88721+ (Clytia hemisphaerica)
ctgGGCatacatttttaggcttagagCTCAAAATGTTGATAACAAgcaaa
gttttggatgttcttataaaaaatgtgtaaaggGCAGTTACATTTTACAA
TTAAACCGATCAACATATATCATGGccataaaaaataccaaaaaataatG
ACTATTTAAATACTCCCTCCNTCAACATATATCATGGCCATAAAAAATAC
cgaaaaataatgataatttaAATACTCCCTCCCCTTGTAGCATCTATAAA
AGAtatcaaaaaattaaagaaaatatttaaaaaatgataaactGACTATA
gtacaaaattacaaaattgttcGCTGGCAATAAAATATGATACATCTAAA
TTGATTGGAAACGTCAAGTCTCCTGATTCTTATAGTAGTCctagaaaagt
aaaaataaaaacaattgtttAATGACATGTTCTATGAGCCAACAACCTTA
GCTTGCTTACCTAGTTTggttgaaacaaaaaaaacgtttctAGCTACCCC
GTGTTAAGAGTTCGGAGTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012391XLOC_012391Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022094-exon-sc0000405-1491911889:88199..88312TCONS_00022094-exon-sc0000405-1491911889:88199..88312Clytia hemisphaericaexon
TCONS_00022094-exon-sc0000405-1510915933:88199..88312TCONS_00022094-exon-sc0000405-1510915933:88199..88312Clytia hemisphaericaexon
TCONS_00022094-exon-sc0000405-1575043694:88199..88312TCONS_00022094-exon-sc0000405-1575043694:88199..88312Clytia hemisphaericaexon
TCONS_00022094-exon-sc0000405-1491911889:88375..88721TCONS_00022094-exon-sc0000405-1491911889:88375..88721Clytia hemisphaericaexon
TCONS_00022094-exon-sc0000405-1510915933:88375..88721TCONS_00022094-exon-sc0000405-1510915933:88375..88721Clytia hemisphaericaexon
TCONS_00022094-exon-sc0000405-1575043694:88375..88721TCONS_00022094-exon-sc0000405-1575043694:88375..88721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000405supercontigsc0000405:88199..88721 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.213589	0	0	0	0	0	0	0.315523	0	0.206386	0	0	0.571746	0.333708	0.350489	0	0.449343	0.245569	0	0.593167	0.416614	0	0	0	0	0	0	1.1702	1.71188
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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