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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022007 ID=TCONS_00022007|Name=TCONS_00022007|organism=Clytia hemisphaerica|type=transcript|length=2124bp
tgcaaaaatctgcttgagccatcctttaactatgattgtaccctactttc
atgctaaaaatcagaaaaaactaatgagccaatctcgagaaaagctggta
actaacacactaactaactaacgaacgaacatgggttaatttataggacc
tccaccccaccggggtaggtccaaaaagataaatgcaaacaaaaaagtat
ataatgaacaaaacaaagaaaagataagtgaaaacaaaaaagctcataat
gaacaaaacaaagaaaagataagtgaaaataaaagagtttactacaaaag
aaataaggacactctaaaagagaagcaaaaaactaatgctaaaaaaaaaa
atctgctaagcAGTCTAATGACCCagtgaaaacatttaaaaaaaatatat
atgaaaGTCCTTTTTACATATGCGTTTCTTGCCACAGATGTCTATATCGa
cgttcagttgctaaattttcTCCTGAAAAATACAACATGCCAGATTATTG
TTTAGAAGTAATTTCTTTCGATGGGAAATTGTATATTTGCAGAACGTGCC
ACAATAAGctcaaaaaagataatttaCCATGTCAGTCAATTAAAAACAAA
CTAAGCCTTGATGAACTACCAACTGAATTCAGTACTCTTCGCAgacttga
aaaggttttaaTTTCTCGTATAATTTTATTTAAGAAAATTGCAATAATGC
CAAAAGGTCAGTTATCCAAGTTAAAAGGGTCAATTTGTAATGTTCCAATT
GACATAGAAGATATTGCTAATACCCTGCCAAGAAAAACTAGTGATAATGG
TCTTGTCATAGTTaaacttaaaagaaaattagaatATAAGGGACATGTAA
TTTTTGAGGCAATTAGGCCTGATTTTGTTCCGCAAAtgttaaattattta
aaagataaCAATCCTCTTTATCAAGACATTCAAGACATTGACAGTGATTG
ATGTCAGTAACATTTCTGATGATGAAACTATGGTGGGAAATAATACAGAT
GTTACTAACATTAATACAGACAGCAATGATCACGAAGAAATTTCTGATGA
GGGTAGCAGAACACAAAATGACACTTCAGTTTTAGAACTTGAGACAACAG
CCAACCCACTTGACGTGTTTCGCTCAAGTGCAAATGAAACAACTCTTATG
TCCCATACTCCCACTGAAACAGAAAtagataatgaaattttaacATTAGC
ACCTGGTCAAGGGAAAAATTCTATTTTGAATgatgaaaattgtgaaatgC
TTGCCCATCCTCATTTGTTTCCCAAAGGTAAATTTGGATTCAACGTTCAA
CGCAATGTTAAATTGAATCCCTCAAAGTACTTTAAACAACGATTATTGAA
CTATACTCAAAAATTTGCCTCTGATCCAGACTACATATTTTTTGCTAACT
CTGTGATTCAACAAGTCTCTTTGACCAGTCAAATAAATGCTGCCATGAGA
AAAGTTGCAGCCTCTAATTTAAATGCGGGAATgttaagtcaaaatttcaa
agaaacagcGAAACAATTTATTGCAAATGACGAAGCCTTTGCTTTTATTA
GTACAGTTAAAGGAACTCCAGcatattggaaaaaatttcagcaAGAAGTT
TTGATAATGGTTGAACACAATTAGGGCAACCaactttctttttgacttta
agCTGTGCTGATCTAAGATGGAGTGAATTGATCTTCATAATTTCCAAACT
CAAGGGTCAAACTACTAACGAATTTATTGAGAATCTTTCTTATCATGAAA
GGTGTGATTTTTTAAATAGCAATCCTGTTCTAGTAGCAAGGCATTTTCAA
TATAGAGttgaagtattttttaaagaaattgtttTAGATGTTCCACTTGG
CAAAACAACTTATTATGCTATTCgggttgaatttcaagtacaAGGAAGCC
CTCATATTCATTCTTTTCTTTGGATTTTGAATGCGCCAACATTAACTCCG
GAAACAAAATCTGAATATGTAGAATttgttgataaaataattaaagTTGG
TTTACCATCACAACAAGAAGATCCAGAATTGTTTAACCTTGTAAAAACCT
ATCAATTTCATCGTCATTCGAAAACTTgtcgtaaatataaaaatacgcCT
TGTAGATTTCATTTCGGCAAATTT Run BLAST on NCBI protein sequence of TCONS_00022007-protein >TCONS_00022007-protein ID=TCONS_00022007-protein|Name=TCONS_00022007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MVGNNTDVTNINTDSNDHEEISDEGSRTQNDTSVLELETTANPLDVFRSS
ANETTLMSHTPTETEIDNEILTLAPGQGKNSILNDENCEMLAHPHLFPKG
KFGFNVQRNVKLNPSKYFKQRLLNYTQKFASDPDYIFFANSVIQQVSLTS
QINAAMRKVAASNLNAGMLSQNFKETAKQFIANDEAFAFISTVKGTPAYW
KKFQQEVLIMVEHN Run BLAST on NCBI transcript from alignment at sc0000401:21609..23732 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022007 ID=TCONS_00022007|Name=TCONS_00022007|organism=Clytia hemisphaerica|type=transcript|length=2124bp|location=Sequence derived from alignment at sc0000401:21609..23732 (Clytia hemisphaerica)
AAATTTGCCGAAATGAAATCTACAAGgcgtatttttatatttacgacAAG
TTTTCGAATGACGATGAAATTGATAGGTTTTTACAAGGTTAAACAATTCT
GGATCTTCTTGTTGTGATGGTAAACCAActttaattattttatcaacaaA
TTCTACATATTCAGATTTTGTTTCCGGAGTTAATGTTGGCGCATTCAAAA
TCCAAAGAAAAGAATGAATATGAGGGCTTCCTtgtacttgaaattcaacc
cGAATAGCATAATAAGTTGTTTTGCCAAGTGGAACATCTAaaacaatttc
tttaaaaaatacttcaaCTCTATATTGAAAATGCCTTGCTACTAGAACAG
GATTGCTATTTAAAAAATCACACCTTTCATGATAAGAAAGATTCTCAATA
AATTCGTTAGTAGTTTGACCCTTGAGTTTGGAAATTATGAAGATCAATTC
ACTCCATCTTAGATCAGCACAGcttaaagtcaaaaagaaagttGGTTGCC
CTAATTGTGTTCAACCATTATCAAAACTTCTtgctgaaattttttccaat
atgCTGGAGTTCCTTTAACTGTACTAATAAAAGCAAAGGCTTCGTCATTT
GCAATAAATTGTTTCgctgtttctttgaaattttgacttaacATTCCCGC
ATTTAAATTAGAGGCTGCAACTTTTCTCATGGCAGCATTTATTTGACTGG
TCAAAGAGACTTGTTGAATCACAGAGTTAGCAAAAAATATGTAGTCTGGA
TCAGAGGCAAATTTTTGAGTATAGTTCAATAATCGTTGTTTAAAGTACTT
TGAGGGATTCAATTTAACATTGCGTTGAACGTTGAATCCAAATTTACCTT
TGGGAAACAAATGAGGATGGGCAAGcatttcacaattttcatcATTCAAA
ATAGAATTTTTCCCTTGACCAGGTGCTAATgttaaaatttcattatctaT
TTCTGTTTCAGTGGGAGTATGGGACATAAGAGTTGTTTCATTTGCACTTG
AGCGAAACACGTCAAGTGGGTTGGCTGTTGTCTCAAGTTCTAAAACTGAA
GTGTCATTTTGTGTTCTGCTACCCTCATCAGAAATTTCTTCGTGATCATT
GCTGTCTGTATTAATGTTAGTAACATCTGTATTATTTCCCACCATAGTTT
CATCATCAGAAATGTTACTGACATCAATCACTGTCAATGTCTTGAATGTC
TTGATAAAGAGGATTGttatcttttaaataatttaacaTTTGCGGAACAA
AATCAGGCCTAATTGCCTCAAAAATTACATGTCCCTTATattctaatttt
cttttaagtttAACTATGACAAGACCATTATCACTAGTTTTTCTTGGCAG
GGTATTAGCAATATCTTCTATGTCAATTGGAACATTACAAATTGACCCTT
TTAACTTGGATAACTGACCTTTTGGCATTATTGCAATTTTCTTAAATAAA
ATTATACGAGAAAttaaaaccttttcaagtcTGCGAAGAGTACTGAATTC
AGTTGGTAGTTCATCAAGGCTTAGTTTGTTTTTAATTGACTGACATGGta
aattatcttttttgagCTTATTGTGGCACGTTCTGCAAATATACAATTTC
CCATCGAAAGAAATTACTTCTAAACAATAATCTGGCATGTTGTATTTTTC
AGGAgaaaatttagcaactgaacgtCGATATAGACATCTGTGGCAAGAAA
CGCATATGTAAAAAGGACtttcatatatattttttttaaatgttttcact
GGGTCATTAGACTgcttagcagatttttttttttagcattagttttttgc
ttctcttttagagtgtccttatttcttttgtagtaaactcttttattttc
acttatcttttctttgttttgttcattatgagcttttttgttttcactta
tcttttctttgttttgttcattatatacttttttgtttgcatttatcttt
ttggacctaccccggtggggtggaggtcctataaattaacccatgttcgt
tcgttagttagttagtgtgttagttaccagcttttctcgagattggctca
ttagttttttctgatttttagcatgaaagtagggtacaatcatagttaaa
ggatggctcaagcagatttttgca Coding sequence (CDS) from alignment at sc0000401:21609..23732 >TCONS_00022007 ID=TCONS_00022007|Name=TCONS_00022007|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0000401:21609..23732 (Clytia hemisphaerica)
CTAATTGTGTTCAACCATTATCAAAACTTCTtgctgaaattttttccaat
atgCTGGAGTTCCTTTAACTGTACTAATAAAAGCAAAGGCTTCGTCATTT
GCAATAAATTGTTTCgctgtttctttgaaattttgacttaacATTCCCGC
ATTTAAATTAGAGGCTGCAACTTTTCTCATGGCAGCATTTATTTGACTGG
TCAAAGAGACTTGTTGAATCACAGAGTTAGCAAAAAATATGTAGTCTGGA
TCAGAGGCAAATTTTTGAGTATAGTTCAATAATCGTTGTTTAAAGTACTT
TGAGGGATTCAATTTAACATTGCGTTGAACGTTGAATCCAAATTTACCTT
TGGGAAACAAATGAGGATGGGCAAGcatttcacaattttcatcATTCAAA
ATAGAATTTTTCCCTTGACCAGGTGCTAATgttaaaatttcattatctaT
TTCTGTTTCAGTGGGAGTATGGGACATAAGAGTTGTTTCATTTGCACTTG
AGCGAAACACGTCAAGTGGGTTGGCTGTTGTCTCAAGTTCTAAAACTGAA
GTGTCATTTTGTGTTCTGCTACCCTCATCAGAAATTTCTTCGTGATCATT
GCTGTCTGTATTAATGTTAGTAACATCTGTATTATTTCCCACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022007-exon-sc0000401-1491911889:21609..23732 | TCONS_00022007-exon-sc0000401-1491911889:21609..23732 | Clytia hemisphaerica | exon |
| TCONS_00022007-exon-sc0000401-1510915933:21609..23732 | TCONS_00022007-exon-sc0000401-1510915933:21609..23732 | Clytia hemisphaerica | exon |
| TCONS_00022007-exon-sc0000401-1575043694:21609..23732 | TCONS_00022007-exon-sc0000401-1575043694:21609..23732 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000401 | supercontig | sc0000401:21609..23732 . |
Blast
The following BLAST results are available for this feature:
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