TCONS_00022005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022005
Unique NameTCONS_00022005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022005 ID=TCONS_00022005|Name=TCONS_00022005|organism=Clytia hemisphaerica|type=transcript|length=490bp
AACACAATTCTTACACACAGAAACTATTTGAACCAGGTGTTGTAGAATTG
ATTGAAAGGAACAGAGCTTTGATCCAACCATATTCTGGTTTAGTAGATGA
TGCATTAGTAAGGTTTACAACTGACATCACGCTCAATATGAATGACTTTG
AACAGCAGGAAAATGATGAAACAAATGCTGAGCTTGAAAGTAATACTGCA
AATAATATTGATGAATCAGATGATGAAGCTAATGAAGACACAGTAGCATT
TAGGGCAGCAATACCAATGGAATCTATTTTGCTTCCTGATAATGAAATAA
ATACTCGTATAAGATCTCTTAATCCTAAAcaaagagaaatttttgatgta
atcgtcagccgtgcaaaattactcgaatctgattggtttagaggagtgcg
attaatcgttaattgcactattaccactttttgcactcttcggcgggggg
acacttttgtccccttattcttttctctccagagactttt
Run BLAST on NCBI

protein sequence of TCONS_00022005-protein

>TCONS_00022005-protein ID=TCONS_00022005-protein|Name=TCONS_00022005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
HNSYTQKLFEPGVVELIERNRALIQPYSGLVDDALVRFTTDITLNMNDFE
QQENDETNAELESNTANNIDESDDEANEDTVAFRAAIPMESILLPDNEIN
TRIRSLNPKQREIFDVIVSRAKLLESDWFRGVRLIVNCTITTFCTLRRGD
TFVPLFFSLQRL
Run BLAST on NCBI

transcript from alignment at sc0000401:19615..20104

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022005 ID=TCONS_00022005|Name=TCONS_00022005|organism=Clytia hemisphaerica|type=transcript|length=490bp|location=Sequence derived from alignment at sc0000401:19615..20104 (Clytia hemisphaerica)
aaaagtctctggagagaaaagaataaggggacaaaagtgtccccccgccg
aagagtgcaaaaagtggtaatagtgcaattaacgattaatcgcactcctc
taaaccaatcagattcgagtaattttgcacggctgacgattacatcaaaa
atttctctttgTTTAGGATTAAGAGATCTTATACGAGTATTTATTTCATT
ATCAGGAAGCAAAATAGATTCCATTGGTATTGCTGCCCTAAATGCTACTG
TGTCTTCATTAGCTTCATCATCTGATTCATCAATATTATTTGCAGTATTA
CTTTCAAGCTCAGCATTTGTTTCATCATTTTCCTGCTGTTCAAAGTCATT
CATATTGAGCGTGATGTCAGTTGTAAACCTTACTAATGCATCATCTACTA
AACCAGAATATGGTTGGATCAAAGCTCTGTTCCTTTCAATCAATTCTACA
ACACCTGGTTCAAATAGTTTCTGTGTGTAAGAATTGTGTT

Coding sequence (CDS) from alignment at sc0000401:19615..20104

>TCONS_00022005 ID=TCONS_00022005|Name=TCONS_00022005|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0000401:19615..20104 (Clytia hemisphaerica)
aagtctctggagagaaaagaataaggggacaaaagtgtccccccgccgaa
gagtgcaaaaagtggtaatagtgcaattaacgattaatcgcactcctcta
aaccaatcagattcgagtaattttgcacggctgacgattacatcaaaaat
ttctctttgTTTAGGATTAAGAGATCTTATACGAGTATTTATTTCATTAT
CAGGAAGCAAAATAGATTCCATTGGTATTGCTGCCCTAAATGCTACTGTG
TCTTCATTAGCTTCATCATCTGATTCATCAATATTATTTGCAGTATTACT
TTCAAGCTCAGCATTTGTTTCATCATTTTCCTGCTGTTCAAAGTCATTCA
TATTGAGCGTGATGTCAGTTGTAAACCTTACTAATGCATCATCTACTAAA
CCAGAATATGGTTGGATCAAAGCTCTGTTCCTTTCAATCAATTCTACAAC
ACCTGGTTCAAATAGTTTCTGTGTGTAAGAATTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012352XLOC_012352Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022005-proteinTCONS_00022005-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022005-exon-sc0000401-1491911889:19615..20104TCONS_00022005-exon-sc0000401-1491911889:19615..20104Clytia hemisphaericaexon
TCONS_00022005-exon-sc0000401-1510915933:19615..20104TCONS_00022005-exon-sc0000401-1510915933:19615..20104Clytia hemisphaericaexon
TCONS_00022005-exon-sc0000401-1575043694:19615..20104TCONS_00022005-exon-sc0000401-1575043694:19615..20104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000401supercontigsc0000401:19615..20104 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.2172	2.40366	5.66658	7.23786	5.27647	3.20033	3.82081	4.23847	0.929604	1.57395	1.17673	1.81149	1.12511	0.500827	1.23047	0.603266	0.327317	0.409128	0.68633	2.29148	4.48176	6.16988	1.2774	2.38041	1.23927	0.57613	4.19994	4.37034	5.25263	4.48912
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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