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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021997 ID=TCONS_00021997|Name=TCONS_00021997|organism=Clytia hemisphaerica|type=transcript|length=3083bpRun BLAST on NCBI protein sequence of TCONS_00021997-protein >TCONS_00021997-protein ID=TCONS_00021997-protein|Name=TCONS_00021997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp MEVGLFSDTSGEQSCVSVYNLSTGVVLKTFKNGSCGRKGLALVQNEYLLARun BLAST on NCBI transcript from alignment at sc0000401:259889..270840- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021997 ID=TCONS_00021997|Name=TCONS_00021997|organism=Clytia hemisphaerica|type=transcript|length=10952bp|location=Sequence derived from alignment at sc0000401:259889..270840- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000401:259889..270840- >TCONS_00021997 ID=TCONS_00021997|Name=TCONS_00021997|organism=Clytia hemisphaerica|type=CDS|length=13590bp|location=Sequence derived from alignment at sc0000401:259889..270840- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021997 vs. Swiss-Prot (Human)
Match: WDR18 (WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2) HSP 1 Score: 235.343 bits (599), Expect = 7.697e-68 Identity = 119/322 (36.96%), Postives = 194/322 (60.25%), Query Frame = 2
Query: 74 MEVGLFSDTSGEQSCVSVYNLSTGVVLKTFKNGSCGRKGLALVQNEYLLAVQHAKQLIHIYDME-KESLMKKIVCSEKINAIAVTPDGHFVVAALKDQIHIWQFSSGQLYCVLSRHFQDIVGIEFTEDGKYFVSYGQDNLIIVWDLNNVLQSCMSSPNSMTSEQRHKPVHVLSNHSMSVEDLNIGVGSFRANMVSCSLDQTCKIFEVSSGKLLKNFVFDVGCTSVAMDTCEKLLFVGMADGRIAIINCY----DQKPSVDAEVTESCYMKAHKKAITCLSVSLDGQHLISGSKDCFVKIWHISSRKCIRSFEFKEQITNVQL 1024
MEV + +D++ V+ L +G L T++ G G +GLAL+ EYLLA Q K I ++++ K+ L +KI+C + + +P+G +V+A + + IH+W+ S+G L +LSRH+QD+ ++FT D +F+S G+D L++VW L +VLQ + P+ + + P HV S+H++ + DL+ G G A + + SLDQT K++EVSSG+LL + +FDV +V MD E +F G ++G I ++ + ++ S E K H+ +TCLSVS DG L+SGS D V++W + S++CIR+ K +TN +
Sbjct: 5 MEVAVCTDSAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQLGKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAGVAESIHLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQ---ADPSRIPA-----PRHVWSHHALPITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGSEGSIFQVDLFTWPGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSKQCIRTVALKGPVTNAAI 318 The following BLAST results are available for this feature:
BLAST of TCONS_00021997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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