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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021959 ID=TCONS_00021959|Name=TCONS_00021959|organism=Clytia hemisphaerica|type=transcript|length=1107bp
CTGGCAAttagaaatagaagaaaatgcTAGGAATCTTACAGTCTTTCATT
TAAATGGCAAGCTCTATAGGTATAAGAGATTAGTCATGGGGTTAAAGCCG
TCACAAGGGGAGCTCAATGCAGCTCTTCAGCCTCTGTTCTCAAATCTTCC
TGAGGTTCACGTCATACACGATGATATTATAATAGCCACCGATGACGAAA
GGTCGCATGTCCATTTAATTGAGAAGACTCTATCCATAATGCAAGAAAAA
GGGCTCACACTCAACAAGGATAAATGCAAATTTAGggcaaaagaaatcaa
attctGGGGAATGGTCATTTCAGCAGCTGGTATAAGACCAGATCCTGAAA
AGGTTGAAGCTTTGAACCACCTCGCCACTCCTAAGAACAAAGAGGAGTCA
ATCAGTTTCATCTGCATGATGCAGAGTAATGCTGATTTCATTGAGGGGTT
CTCTCAAAAAGCTTCTACCTTGAGGGAGCTTACAAAGAAAGGGGTAAGAT
TTAAATGGCAAAAGAAACACAATGATGCATTCTACTCCCTTATAGAAGCA
TTCCGTAAGGACGTACTCCTGCGTTATTTTGACCCAAATGCTAGAACGTT
TATTGTTGTTGATGGTCACAAGACGGGGCTAGGCGCAATTTTAGCACAAG
GTCCGTCTTTAGAAGAAGCAAAACCAGTTGCTCTAGCCTCAAGGACAACC
AATGATTCTGAGAAACACTGTCCTCAATTGGATTTAGAAGCTGCTAGCCT
TGACTTTGGACTCAGACGATTCCGTGAATATGTTGTAGGTTCGCCTGCCC
TTATCAAGGTGATCACTGATCACAAGCCCTTGGTACACATATTCAATGGA
AAGCGTTCTGGTTCCATTAGAACAAAGCGAATCAAATTGAATCATCAAGA
CATACCGTTCATTGTTGAATACCAGAAAGGGTCTCTTAATCAAGTAGACT
ACATGAGTCGTCATGGGAGAAAACTTTCCAGTCTTCCAATTGGCCAGAGA
GAAGAATGCAATGACCTCAATAATCTTCTATACGCACTTCATATGACACA
AGTCGTTGATCACATTTCACTAGCGAGAATCGCTCAGGAAACCGCTGATG
ATAAAAC Run BLAST on NCBI protein sequence of TCONS_00021959-protein >TCONS_00021959-protein ID=TCONS_00021959-protein|Name=TCONS_00021959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
WQLEIEENARNLTVFHLNGKLYRYKRLVMGLKPSQGELNAALQPLFSNLP
EVHVIHDDIIIATDDERSHVHLIEKTLSIMQEKGLTLNKDKCKFRAKEIK
FWGMVISAAGIRPDPEKVEALNHLATPKNKEESISFICMMQSNADFIEGF
SQKASTLRELTKKGVRFKWQKKHNDAFYSLIEAFRKDVLLRYFDPNARTF
IVVDGHKTGLGAILAQGPSLEEAKPVALASRTTNDSEKHCPQLDLEAASL
DFGLRRFREYVVGSPALIKVITDHKPLVHIFNGKRSGSIRTKRIKLNHQD
IPFIVEYQKGSLNQVDYMSRHGRKLSSLPIGQREECNDLNNLLYALHMTQ
VVDHISLARIAQETADDK Run BLAST on NCBI transcript from alignment at sc0000400:213207..214313 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021959 ID=TCONS_00021959|Name=TCONS_00021959|organism=Clytia hemisphaerica|type=transcript|length=1107bp|location=Sequence derived from alignment at sc0000400:213207..214313 (Clytia hemisphaerica)
GTTTTATCATCAGCGGTTTCCTGAGCGATTCTCGCTAGTGAAATGTGATC
AACGACTTGTGTCATATGAAGTGCGTATAGAAGATTATTGAGGTCATTGC
ATTCTTCTCTCTGGCCAATTGGAAGACTGGAAAGTTTTCTCCCATGACGA
CTCATGTAGTCTACTTGATTAAGAGACCCTTTCTGGTATTCAACAATGAA
CGGTATGTCTTGATGATTCAATTTGATTCGCTTTGTTCTAATGGAACCAG
AACGCTTTCCATTGAATATGTGTACCAAGGGCTTGTGATCAGTGATCACC
TTGATAAGGGCAGGCGAACCTACAACATATTCACGGAATCGTCTGAGTCC
AAAGTCAAGGCTAGCAGCTTCTAAATCCAATTGAGGACAGTGTTTCTCAG
AATCATTGGTTGTCCTTGAGGCTAGAGCAACTGGTTTTGCTTCTTCTAAA
GACGGACCTTGTGCTAAAATTGCGCCTAGCCCCGTCTTGTGACCATCAAC
AACAATAAACGTTCTAGCATTTGGGTCAAAATAACGCAGGAGTACGTCCT
TACGGAATGCTTCTATAAGGGAGTAGAATGCATCATTGTGTTTCTTTTGC
CATTTAAATCTTACCCCTTTCTTTGTAAGCTCCCTCAAGGTAGAAGCTTT
TTGAGAGAACCCCTCAATGAAATCAGCATTACTCTGCATCATGCAGATGA
AACTGATTGACTCCTCTTTGTTCTTAGGAGTGGCGAGGTGGTTCAAAGCT
TCAACCTTTTCAGGATCTGGTCTTATACCAGCTGCTGAAATGACCATTCC
CCagaatttgatttcttttgccCTAAATTTGCATTTATCCTTGTTGAGTG
TGAGCCCTTTTTCTTGCATTATGGATAGAGTCTTCTCAATTAAATGGACA
TGCGACCTTTCGTCATCGGTGGCTATTATAATATCATCGTGTATGACGTG
AACCTCAGGAAGATTTGAGAACAGAGGCTGAAGAGCTGCATTGAGCTCCC
CTTGTGACGGCTTTAACCCCATGACTAATCTCTTATACCTATAGAGCTTG
CCATTTAAATGAAAGACTGTAAGATTCCTAgcattttcttctatttctaa
TTGCCAG Coding sequence (CDS) from alignment at sc0000400:213207..214313 >TCONS_00021959 ID=TCONS_00021959|Name=TCONS_00021959|organism=Clytia hemisphaerica|type=CDS|length=1104bp|location=Sequence derived from alignment at sc0000400:213207..214313 (Clytia hemisphaerica)
TTTATCATCAGCGGTTTCCTGAGCGATTCTCGCTAGTGAAATGTGATCAA
CGACTTGTGTCATATGAAGTGCGTATAGAAGATTATTGAGGTCATTGCAT
TCTTCTCTCTGGCCAATTGGAAGACTGGAAAGTTTTCTCCCATGACGACT
CATGTAGTCTACTTGATTAAGAGACCCTTTCTGGTATTCAACAATGAACG
GTATGTCTTGATGATTCAATTTGATTCGCTTTGTTCTAATGGAACCAGAA
CGCTTTCCATTGAATATGTGTACCAAGGGCTTGTGATCAGTGATCACCTT
GATAAGGGCAGGCGAACCTACAACATATTCACGGAATCGTCTGAGTCCAA
AGTCAAGGCTAGCAGCTTCTAAATCCAATTGAGGACAGTGTTTCTCAGAA
TCATTGGTTGTCCTTGAGGCTAGAGCAACTGGTTTTGCTTCTTCTAAAGA
CGGACCTTGTGCTAAAATTGCGCCTAGCCCCGTCTTGTGACCATCAACAA
CAATAAACGTTCTAGCATTTGGGTCAAAATAACGCAGGAGTACGTCCTTA
CGGAATGCTTCTATAAGGGAGTAGAATGCATCATTGTGTTTCTTTTGCCA
TTTAAATCTTACCCCTTTCTTTGTAAGCTCCCTCAAGGTAGAAGCTTTTT
GAGAGAACCCCTCAATGAAATCAGCATTACTCTGCATCATGCAGATGAAA
CTGATTGACTCCTCTTTGTTCTTAGGAGTGGCGAGGTGGTTCAAAGCTTC
AACCTTTTCAGGATCTGGTCTTATACCAGCTGCTGAAATGACCATTCCCC
agaatttgatttcttttgccCTAAATTTGCATTTATCCTTGTTGAGTGTG
AGCCCTTTTTCTTGCATTATGGATAGAGTCTTCTCAATTAAATGGACATG
CGACCTTTCGTCATCGGTGGCTATTATAATATCATCGTGTATGACGTGAA
CCTCAGGAAGATTTGAGAACAGAGGCTGAAGAGCTGCATTGAGCTCCCCT
TGTGACGGCTTTAACCCCATGACTAATCTCTTATACCTATAGAGCTTGCC
ATTTAAATGAAAGACTGTAAGATTCCTAgcattttcttctatttctaaTT
GCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021959-exon-sc0000400-1491911889:213207..214313 | TCONS_00021959-exon-sc0000400-1491911889:213207..214313 | Clytia hemisphaerica | exon |
| TCONS_00021959-exon-sc0000400-1510915933:213207..214313 | TCONS_00021959-exon-sc0000400-1510915933:213207..214313 | Clytia hemisphaerica | exon |
| TCONS_00021959-exon-sc0000400-1575043694:213207..214313 | TCONS_00021959-exon-sc0000400-1575043694:213207..214313 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000400 | supercontig | sc0000400:213207..214313 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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