|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021941 ID=TCONS_00021941|Name=TCONS_00021941|organism=Clytia hemisphaerica|type=transcript|length=7414bpRun BLAST on NCBI protein sequence of TCONS_00021941-protein >TCONS_00021941-protein ID=TCONS_00021941-protein|Name=TCONS_00021941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1806bp MFLKTNIVCAIWCTMRSVTGTLQILASFYLIINIVKTEDFDKVHMTNSWARun BLAST on NCBI transcript from alignment at sc0000400:170795..199401- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021941 ID=TCONS_00021941|Name=TCONS_00021941|organism=Clytia hemisphaerica|type=transcript|length=28607bp|location=Sequence derived from alignment at sc0000400:170795..199401- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000400:170795..199401- >TCONS_00021941 ID=TCONS_00021941|Name=TCONS_00021941|organism=Clytia hemisphaerica|type=CDS|length=86736bp|location=Sequence derived from alignment at sc0000400:170795..199401- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021941 vs. Swiss-Prot (Human)
Match: NEC1 (Neuroendocrine convertase 1 OS=Homo sapiens GN=PCSK1 PE=1 SV=2) HSP 1 Score: 495.352 bits (1274), Expect = 2.124e-152 Identity = 271/588 (46.09%), Postives = 368/588 (62.59%), Query Frame = 3
Query: 1896 SVTGTLQILASFYLIINIVKTEDFDKVHMTNSWAVHIENGNNEIADQVAEKHGFSNVGQIGSLPGYFHFVHXXXXXXXXXXXXDVTENKTFTLLEDDKVKWVERQHVLERDKRGVVPEYIPTTHAEGYIIRDPLFSEQWYLNNVGQSNGPSTLDINVLPVWSRGISGKNVVVAILDDGVDHTHPDLKANYDPRASYDFVXXX-XXXXXXXXXXXXCHGTKCAGEVAAEAGNDICGVGVAFNSSIAGIRMLDGNVTDTIEGSALSYKKDYIDIYSCAWGPKDDGKRFGRPGTLASKALELGVKEGRQGLGSIFVWATGNGGLTDDDCNCDGYTTSVYTISIGAISDHGLSTYYTESCSSTLGVTFSGGSHREKKENKIITTTLHHECTDEFKGTSSAAPLAAGMIALMLEANSKLGWRDVQHIIVETALMTSPL--DEGWRRNGAGKWFNQKFGFGRLDASAMVDRAN--NWRNVGEQRAC-WGDTSVGPWDIPDSGTLLTSSNATACEGSNSAVKTLEHVQVIITLRHRHRGHVSIELISPSGTRTRLLKTRRNDKSTKGLKDWIFMSVHFWGEDPHGIWTLAITDNS 3641
S+ T +L + +N K K N WA I G E A +AE+ G+ +GQIGSL ++ F HK +RSRR +T+ L +DD+V W E+Q+ ER KR + + + + DP++++QWYL + + LD++V+PVW +GI+GK VV+ +LDDG++ H D+ ANYDP ASYDF D D + D N HGT+CAGE+A +A N CGVGVA+NS + GIRMLDG VTD IE S++ + ++DIYS +WGP DDGK PG LA KA E GVK+GRQG GSIFVWA+GNGG D+C+CDGYT S+YTISI + S GLS +Y E CSSTL ++S G + ++ +I + LH++CT+ GTS++APLAAG+ AL LEAN L WRD+QH++V T+ PL + GW++NGAG N +FGFG L+A A+VD A+ WR+V E++ C D P + +G ++ ACEG +A+K+LEHVQ T+ + RG + + L S +GT T LL R D S G K+W FMSVH WGE+P G WTL ITD S
Sbjct: 7 SLQCTAFVLFCAWCALNSAKA----KRQFVNEWAAEIPGGP-EAASAIAEELGYDLLGQIGSLENHYLFKHKNHPRRSRRSAFHITKR----LSDDDRVIWAEQQYEKERSKRSALRD------SALNLFNDPMWNQQWYLQDTRMTAALPKLDLHVIPVWQKGITGKGVVITVLDDGLEWNHTDIYANYDPEASYDFNDNDHDPFPRYDPTNENKHGTRCAGEIAMQANNHKCGVGVAYNSKVGGIRMLDGIVTDAIEASSIGFNPGHVDIYSASWGPNDDGKTVEGPGRLAQKAFEYGVKQGRQGKGSIFVWASGNGGRQGDNCDCDGYTDSIYTISISSASQQGLSPWYAEKCSSTLATSYSSGDYTDQ---RITSADLHNDCTETHTGTSASAPLAAGIFALALEANPNLTWRDMQHLVVWTSEY-DPLANNPGWKKNGAGLMVNSRFGFGLLNAKALVDLADPRTWRSVPEKKECVVKDNDFEPRALKANGEVIIEIPTRACEGQENAIKSLEHVQFEATIEYSRRGDLHVTLTSAAGTSTVLLAERERDTSPNGFKNWDFMSVHTWGENPIGTWTLRITDMS 575 The following BLAST results are available for this feature:
BLAST of TCONS_00021941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.