TCONS_00021934 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021934
Unique NameTCONS_00021934
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021934 ID=TCONS_00021934|Name=TCONS_00021934|organism=Clytia hemisphaerica|type=transcript|length=735bp
AGCANGTCTAGCAGAAATGTTCCAAAACTTGATTACAAGAGCTTTCATGT
AAGCTCCACTGCTAGTGAGCATGAAGCAATGGCTGCCTCCAGACGAAGGA
AGACTGGAGCAAATGTGTGGCAAGCAGAGGAAATACTTGCTGAGAAAAAG
ATTGGTCGACACACGAAGTATTTGATCAAATGGGCTGGTTTTGGGACGGA
AGATTGCACCTGGGAACCAAGAGAAAACCTTTTGGACGAAAGATTATTGT
TAGCTGGTTGTGTGACGAAACAACGTTATCAGAACATTTTGTGATCGTAT
CTCAGAGGAACCGTCCCCATTGCTCTGCCTGAAGTGGAAAACGAAGAAGT
TGATCAATTAGAAAGAACAAAGACAAATACTGAACGAAAAACAATTGTAC
GCCCAAGGATTTACAGAAGGATAGTTGTTACAGGCATATGGGAAAATCGG
GTCGAGGctcaatatgcttagcaaaatctcatgTTGTTACACCTTACTTT
ATATTGGAGAGTCTTCGATATTGTTGACGTTTTCCAAGCTCGTGGAACAT
TTTGCCAGTTCTGACCTCCTTTTGGGTCTTTTCTGCTTCCGTAACTTCCt
gaattataaaaaatatgatttatattatgattcttttatatataattaaa
ttatttgttcaaatttaaagaaaattaacaGAATTTTTGCTATCTTGATC
GACATAAATTAGAAGGGAAAAAAGGTGAATTTAAA
Run BLAST on NCBI

transcript from alignment at sc0000400:135723..145446-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021934 ID=TCONS_00021934|Name=TCONS_00021934|organism=Clytia hemisphaerica|type=transcript|length=9724bp|location=Sequence derived from alignment at sc0000400:135723..145446- (Clytia hemisphaerica)
AGCANGTCTAGCAGAAATGTTCCAAAACTTGATTACAAGAGCTTTCATGT
AAGCTCCACTGCTAGTGAGCATGAAGCAATGGCTGCCTCCAGACGAAGGA
AGACTGGAGCAAATGTGTGGCAAGCAGAGGAAATACTTGCTGAGAAAAAG
GTGAGATTCTTTTTTTTAGTTTTCTTTCCACAGAAAAGGATTGTTTATAA
TAATTAAAAACTCGAATATGATCTTCAAATAAATGAACTTTTTTTTTTAG
GAAGTTTTAAAAACTTCTATTTTGCATATGTTTTTTTAACAAGTAGTTCT
AGACGAGACTTTATTATTTCATTGTGTAAATTCCTTCATATTTTTCTGAG
AAAAATTATCTTTTCTTAGAATTGAGAAAATTATCTTTTCTCAGAACTAG
ATAGTATTTTTTTCTCAGCTACTCTTTTTGTTTTGTTTCATTTCACTGTC
TTGTGCTTTTAAATTTGTCTGAATTTTTTCTGAGAATGCTTTTCTCTCTT
TTCGCAGTCAAAAATAGAAAGTCCTTCTCAGAAGAAAAATATTTTTCGAA
TGAAAGAGTGGTTCACCTCCTAGATTTTGTTCATTGAGAGACTTGTATCC
TAATATTTTCTATAGATTGGTCGACACACGAAGTATTTGATCAAATGGGC
TGGTTTTGGGACGGAAGATTGCACCTGGGAACCAAGAGAAAACCTTTTGG
ACGAAAGATTATTGTTGTAAGTATTAGAGTTATATTTTAAATTTTTATTT
TCTTCCTTGTGTCTTTCTAGACTTTATCTCAACCATTCCAACTATGCTAT
TTAAACGGTTTTACATTTATATTCCACCTCTCAGGTACTGGGAAGACCCT
CGAGCATTTCAAAGGAATGATATCAGGAGAGTATCCTTTTACAAAGAACG
GCTCCTCACCTGTTTTGAGTCTTGTCTCAAGGAGAGATTGAAAAGCACTC
GACACCTTGACTTCCCTGTTTTTATGTTTCGGTATTTTTTTCATGGGAAA
GGAGTTGCTTTAACGAGGGGGACCTGGTCTTTTCAAAAGAAAGACTTTAA
AAAAATCTTACCTCGTGGTTGGGACTGTTGTCTTATAAACAGTNGTCTTT
TCAAAAGAAAGACTTTGAAAAAATCTTACCTCGTGGTTGGGACTGTTGTC
TTATAAACAGTAGGGGAAGCCGTAGAGAAATATTATTTCCTGTAACAATA
CGTTGTTTTTTATCAAAGTCTCCTAAGGTTTTCTCTAAATCTGATGATGG
AACCATTTTGAGAAAGAAACAACGATTGTTACAAAGAATTACTATTTCTT
TCTTTAAAGAAACTATAAATAATTAATTTTATGATATAAATAAAATTTGT
AAATATTCATATGTACAGAATAAATAATGGAACGTTCGAAAATATTCGAA
AATATCCAAGTCATTCGAAAATTTAAATGTTCATTTTGGATTGATACAGA
CACATCACGATTCAAAGAAGACAGAAACATGGGGCACACATTTTTTTTGT
AAATAAGATTTGACAAGATCTAGAAGATTTGATTTGATTATGATTATGTC
TCACCAAGTTTCTAATCGTTATTTCAGAGCTGGTTGTGTGACGAAACAAC
GTTATCAGAACATTTTGTGATCGTATCTCAGAGGTAAATATTTACATAAA
ATAACTAATTATTCCTCATTTTTGTGGTATTTTCGCTTGGGTCTCTTATA
ACCATCTTCCTCCAACTCTGTCATGCGTTTGTCTACCCTGAGCATTGCCT
TGCATGCATCTTTCTTATTTATCTTTCTTTGGAAAATCTTTCTGATGTCA
TCATTTTTCTTCTCGACACCTAAAAATCAAAGGACTGAAAAAGTTAAATA
TGTCTTATGATAGAGTAAGGTTTGTTTGAAAAAATTAATATTTTGTATGT
GGAATCTGGAAGTGCTTACTGACCTTGACCAGAGAAGTACTTTAGTGTAC
CGTATTCGGTCAAGTATTCTGGTACATGTTTGATCAAAATGTGGATGTAC
GGTGTTATTTCTTGTCCCCAATCGTAACCACATACATTCATACGTCCTAG
GAACCGTCCCCATTGCTCTGCCTGAAGTGGAAAACGAAGAAGTTGATCAA
TTAGAAAGAACAAAGACAAATACTGAACGAAAAACAATTGTACGCCCAAG
GATTTACAGAAGGATAGTTGTTACAGGGTAAGAGAGCTCACTTTTTGTGA
AAATTCATCGATTTGTTCTGTCGTAAGGTTGATTTTGTTCATTTCTTTGT
ACAGCCATTCAAAGTCCTGAAAGTAGAACAGTGTAAGATTTTTGAGTAGT
GTAATTTGTTAAGAGCCATTTTTTTTAAAAATCTTCAGAATAAAGAAAGT
GTGATACATCACCCTCTTAGATTTTGATGAAATTTTGACCAAATGATCCA
TCACACAAGAAAATAAGACCATGAAAATTTCACCTTGATATCTCAAGTAG
TTTTGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TGTGATGGATCATTTGGTCAAAATTTCATCAAAATCCAAGAGGATGAGGT
ATCACACCCTGAAGACTCTTAAAAAAAATGGCTCTTAAGAGGTTTAAGTA
GAAAATTTTGGTTCTCTATCAAATCTCCATGAAATATTTTGAATGTAATA
ACCACACCAAGAACAATTTTGAAAGATAATTTCATTAGCCTACCTGCCAT
AGCTTTCTTGTTGGCTCCACCTCACTTGGCTTTAGAAATTCATCAAACTT
TGATGGCAATTTAGCTAGCAGCCTTTTCTTGTCGTTGCCCATTAGTGATG
TCCATTCTAGTTTGTTCTTCTTATTTTCCCAAATTTTAAAGGAAACCCCA
CATTCTTGTATGCAACGAATCATTGCCTTTTGATGGACATCAGTTTTTTC
TTTCTGTAAAATTGATAAAGAAACCAGAGATATAAAATTTGAATTACCCT
TTTAAGAAAAGTATAATAAAAAACATACAAAAAAGTTGAGGTTGAGGGCT
TAAAAAGGCTAAAAAATACTTATAAGGTTGCTCGTATCCCTAGCAAAACT
TTGGAATGTCAAAATTCCCAGCCAAAAACATACAATGTAGGTTCAAGGTA
ATGCCAAGCAATTCCTTGAATTTTTGCCATATCTGAGCCTATATAAAAGA
ACATGTAGTTAATATTAACAGGACTATGATATACCTGGTCTCTGTCAATG
ACATTGTGAATCATCCCTTCTTCTAGCCGGTCTGTTATCCGCAAAAGGAG
ATGCAATTCGTCAATGACGTGGTCACAAACTGGCACTTCATGAAATAGCG
GAAAGTCTTGACATCCAGGATCCTTGTTCCACTTGGCATGGTGTTTTCGT
TTCTCAGCGTTGGTCTCAAACTTGTTTCTTGAAGTAAAAGGTAAAAATTA
TTTTTTTACTACAATAACTTAACTTAAATTTGCGTCCATGAAAGTACAAA
TCTCCAAAAAGAAAGGTTAAATTTTAAAATTCCCAGCTAACCTTTTTGAT
TTGTGAATTTTGCAATATATGCACGAATTATTTGATGTTGCTGCTTTCAT
ACCAAGACAGAGCAATAGAAACTGAAACAAAAAATTAAAAAATTTATGTA
TTTGTCATGAAAATATGTACATCACGATGAGTTTAATTAAAAGTTTTTAG
CTAAATTTAAAGCGTCCTTCTGTAACAAATTTTCAAAAAGTTATAGTCAA
GGCTTTATTTTTCTCCTTTACAGAAAGAATTGTTTACCTTCATATCACCA
CCAACGAGAACTTTGACTTTTTTCCTAGTGCCATTTAATTCAATTGACTT
TTCCTTTGCAATGGTGTTAACTGTTTTTGTGACATTCGACAAGGAGCTCT
TCACAGATTTGTAATTTTCATCTGTCTTTACGATTGACAACACCTTGTTT
CCTGACAAAATATACAAGAATTTTTTTTTTTTTACTACATTCTCTCGATG
AATGTCGTGATCAACCAATTAAGTCCAAGTAAGTACTAGTTTCCTACTAG
GTTCTATGTAAACATGACTTTCGTTTACTTACCAAAGCTGGATAGCTGTT
TTCCCATACCTACAAATACCGAGTAGGTGCAAACGACAATTGTTGTTGAA
CGTGAGATTTTAGTCCCATCAGCACTGATCTTGAGCTGAAAATGATTAAG
TGTTACATCAAAACCCGTTAATTTGTGGGACTTGTTTTAAACCTTTTTTG
TAAGTTGGTAGATTTGGGGGTTAAGTTTTATATGTACATACCGTAAACTC
ATTTTCTTTCAACCTTTGAATAAACGAATCTTTTGTCAGCGAATCCAACA
AATCTATCTCCGCACCAAGTTGACAAGGGGTATACATAATGTCAAATGAC
TCGTTCATTGTTCTATAATTGAGGTCAATAGTTAACAACAGAATAACAGA
ATCAAAATCAAACTTTCAGTGCACTTTCAAAGACAAAAACTAATTTTATC
AGATGATCAAATGTGAAATGTCTTCCAAAAAAGAGTTCCTGAAGATTTCC
GGTCTAGAGTAAATAATATAAAGGGTATTCTCTAGTTTTGAATTATACCT
TTGGAATTTTTCAACCAGGTAAGATCTTGGCAGGTCTGGAAACATTTGAC
TCAGCTCATGATATCCACTTAAAGAGATGCTGTGCTTATCCAGGATGTAC
TGTAAAGACTTCATCTTTGCTTCATAGTCTTCCTCTGAAATAAAATCATA
GATTTTATATAAGAAAAATCCTCATTCGTTAAATTATCTCCTTGATTGCT
TATTTATTTTATTTTCTAGGAATTTACAAACCTTCCACTGAGTAACCAAA
GCAGCCATCTGATGACGTACTTTCTTGGGATGAAGCATCGATCGAACTTT
GGGACGAATCTATGATATGAAATTTCTGGTTATGATTGGATGTTTGAAAT
TGATATAGCTTTGAAATGACAGCCTAGGGAAACGTGTCATTTGAGCAATT
TCACTGGTTTGAGAGATGCGGAATAGCGTTTGCCGCCCTAATTTTTTTGA
TCTCACGCTCTGAAAACAATTAAAATGCTAGATCCTATCCATCGCACGAA
ATTTAAAAAATTCAAATTTTTCCTTCACTTTTTATGCTGGAGAAAGCTTA
AAGTTGCCTATTTAGCCCTTCGGCCTTTACAGATATCTGTGGTTATGTTG
GATATCTGAAATTGAAAGCTCACCAAATTTGACAGTTATCTTTTCTCTTG
TTGCTCCGGCCTAGGAGCCTTAAATTCTCTCTCGTCCGACGACGACGGTC
AAGACATTTTTATTTTGTTTATCTAATCCGATGATCTATTCCGATTTAAT
AAAAACGGATTATCTGATTCCAATGATACCGTGATTTGATTGGCCGAAAG
TATTTAAGAAAAAGATGGCTACCGAAAGTGGACTAGCTGACTGGACTGTG
TAGCAAATACTGTCAAATCTCAGTGAAAAATTGATCATTTTCATCATTAT
TCATGATGTTTTAGACATGATTTATGAGAAGTTTGATGCATACTGGTTCT
CTAACAATGTGGAAAGACTGAAAGAGGAATTTTGGCCATGAATCGTCTGC
TGATCGAGTGCTTAAATCTTGCATATGGCTAACTTCTCTTCTAAACCTTG
GAACTTGACAATGAAACTTTCAAACACATAGCCATTGGAATTCAAAAGAG
AATACTAAAATTACAACATTACAGTGAAAATTTGAAAACAATCTGAGTAG
TTTTTGTGGTGTTATGTGTATGACTGAAAATGATCCTTTTTTGTATTCAT
CATTGACATTGATGACGTTGATGACACTGGCGACCGTTCCTTTTCTTTTG
ATTTTTCAAACCCGACACAGATTTTTACAAACATATCACTATGAGAATTC
ATTAAAGGATACTAAAACACAATCCCTGTGTAAATTTGAACAAGATTGGA
GAAATTTTCACAGTGTTATGGCTGAAAATGATCGTTTTTGGACTTTGTCG
TAATTTCAATTTCATCGCGGCTGGCAACCGTTCCTTTTGATTTTTCAAAC
CCGACACAGATTTTTTACAAACATATCACTATGAGAATTCAGTAAAGGAT
ACTAAAACACAATTCCTGTGTAAATTTGAACAAGTTTGGAGAAATTTTCA
CAGTGTTATGGCTGAAAATGATTGTTTTTGGACTTTGTTCATCGCGGCTG
GCAACCGTTCCTTTTGATTTTTCAAACCGGACACAGATTTTTTACAAACA
TATCACTATGAGAATTCAGTAAAGGATACTAAAACACAATTCCTGTGTAA
ATTTGAACAAGATCAGAGAAATTTTCAGTGTTATAACTGAAAATTATATT
TTCTGGACTTTGTTGTAATTTCATTGGCTGGGGCGACTGATCCTTTTGAA
GATTTTTCAAACCCGAAACAGGTTTTTTCCAAATATACCAATATTTATTA
CATACACACTATTGTACCATTTTATTTGGTTTATCCTACTCTCCTCCAAG
TATTATCCCAACAAAAAAAATAATGCTTAGCTAAAAGCCGTGGCCTCTAA
TTTAGGCTATTTTTCTCCATAAAATTTTATCCAGACAATCAAATCAACAG
CGCATCATGGCTTCGCTAATTGGCAAGTTTAGAAAAAAATAAATTTATAA
GAACTTGGAAATATTGACTTCTAAATGTTTATCTTCTTTAGCTCCGATTT
GAACTTTTTAGTCAAGGATGAGTGGGCGGGGGGTGGGGTTGGTTCTTTAG
GCAAGAAAGTGCTTGTTTAATCACTTAGAAAAGCTAAACTTCCAGCTGGT
TTATTTATTTGTTAAGATTATTTCTCATACTCGCTCTGCAATAGAATTAT
TACTTTGCTTTCTGATCTGTTCTGATTAGTATTTTGTGGGCAAGGTTCTA
ACACAACTAACTCAACAAATTCATCTTTCACATCTTTTAATCTCTTAAGC
CGGAGCTTCCAGCGCAGCTGGTTTATTTGAGTTTCCATTGTGAGGGTACA
AGGAATCAAGCCAAATTGCTCTGCTGCTTCTTTTGAACTGGTTCTAAATC
AGGAAGATATTTTCCTTTTAATATCAACTATCAAAATTGGATGGCATTTT
GGGGGAAGGATCTAAAACAGGGATCGACAAAAAAAATTGGGCACGCAAAG
ATATTATACTCTCACATCAATTTCTCTAATTTTCTTTTGGAGGGCATATT
ATGTAGTTTTCGATATACCTCTGGGAATTCATGTTTTTAGAATTTACTGG
TATTTATAATTATGTATGATAAAATCTAGTTGAAATTGTAGGTTTTATTT
TGATATCTTTATACTTTATACTTGTTGATTTGTTTTTTGAAATTCAATCA
CCTAAACCGTATAAAAACCCTGGTCTGGAAGACTTTCAATTCTTTCCATT
TTTCCAATACTTTTTTTTTGTAGCATATGGGAAAATCGGGTCGAGGCTCA
ATATGCTTAGCAAAATCTCATGTTGTTACACCTTACTTTATATTGGAGAG
TCTTCGATATTGTTGACGTTTTCCAAGCTCGTGGAACATTTTGCCAGTTC
TGACCTCCTTTTGGGTCTTTTCTGCTTCCGTAACTTCCTGAATTATAAAA
AATATGATTTATATTATGATTCTTTTATATATAATTAAATTATTTGTTCA
AATTTAAAGAAAATTAACAGAATTTTTGCTATCTTGATCGACATAAATTA
GAAGGGAAAAAAGGTGAATTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012306XLOC_012306Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021934-exon-sc0000400-1575043694:145297..145446TCONS_00021934-exon-sc0000400-1575043694:145297..145446Clytia hemisphaericaexon
TCONS_00021934-exon-sc0000400-1575043694:144731..144831TCONS_00021934-exon-sc0000400-1575043694:144731..144831Clytia hemisphaericaexon
TCONS_00021934-exon-sc0000400-1575043694:143814..143869TCONS_00021934-exon-sc0000400-1575043694:143814..143869Clytia hemisphaericaexon
TCONS_00021934-exon-sc0000400-1575043694:143270..143396TCONS_00021934-exon-sc0000400-1575043694:143270..143396Clytia hemisphaericaexon
TCONS_00021934-exon-sc0000400-1575043694:135723..136023TCONS_00021934-exon-sc0000400-1575043694:135723..136023Clytia hemisphaericaexon
TCONS_00021934-exon-sc0000400-1510915933:145297..145446TCONS_00021934-exon-sc0000400-1510915933:145297..145446Clytia hemisphaericaexon
TCONS_00021934-exon-sc0000400-1510915933:144731..144831TCONS_00021934-exon-sc0000400-1510915933:144731..144831Clytia hemisphaericaexon
TCONS_00021934-exon-sc0000400-1510915933:143814..143869TCONS_00021934-exon-sc0000400-1510915933:143814..143869Clytia hemisphaericaexon
TCONS_00021934-exon-sc0000400-1510915933:143270..143396TCONS_00021934-exon-sc0000400-1510915933:143270..143396Clytia hemisphaericaexon
TCONS_00021934-exon-sc0000400-1510915933:135723..136023TCONS_00021934-exon-sc0000400-1510915933:135723..136023Clytia hemisphaericaexon
TCONS_00021934-exon-sc0000400-1491911889:145297..145446TCONS_00021934-exon-sc0000400-1491911889:145297..145446Clytia hemisphaericaexon
TCONS_00021934-exon-sc0000400-1491911889:144731..144831TCONS_00021934-exon-sc0000400-1491911889:144731..144831Clytia hemisphaericaexon
TCONS_00021934-exon-sc0000400-1491911889:143814..143869TCONS_00021934-exon-sc0000400-1491911889:143814..143869Clytia hemisphaericaexon
TCONS_00021934-exon-sc0000400-1491911889:143270..143396TCONS_00021934-exon-sc0000400-1491911889:143270..143396Clytia hemisphaericaexon
TCONS_00021934-exon-sc0000400-1491911889:135723..136023TCONS_00021934-exon-sc0000400-1491911889:135723..136023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000400supercontigsc0000400:135723..145446 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.70164	3.06576	1.28176	1.01333	0.771222	0.888814	1.62252	0.68799	1.51315	0.654933	0.88688	0.359657	0	0.888942	7.21543	3.87719	8.84206	8.4591	3.68514	2.24449	3.46067	5.38511	5.43464	3.75603	0.529395	0	15.6106	14.1544	5.55589	3.8637
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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