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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021912 ID=TCONS_00021912|Name=TCONS_00021912|organism=Clytia hemisphaerica|type=transcript|length=931bp
GAAAGGAACATGAGGCGAATGATATAATCAATCATAAACTCGACTttgct
ttctttatttttcagaagTCGGTCCCTTACGTTATCTACTGATAAAGAAC
CGGTAGCATTCAAAAGTGTCAATTCTGCGTTGAGCTTCCACTTCCTCGGC
ACGGAAGATCACGAGGATTTCTTTGGGAACCTCTCTTTGGCACTTGCTGT
CAATGAAATGCAGCAGTTACTTGATTGTATTACTAGCGGAAAGTTTGGCT
TAGGTCCGAAGAGATTCCAAGATTGGCTCGATGCCTATGACAAAGACACc
cttgaaaaatctcttttggcttCTGTATCGAAACCTAAAGtAATGGTGAA
TTTGTTGGGTATTGCTTTGggcctcaacaaaaatttaaagattgTAGATG
AAGAAGGCGTGAGTGTTGTTTGCGTCGATGATACCTCGTTATGTACGATG
CCATTCATACTCACTTCTGGCGGATGTTTATATTTGGCTGCCTTTGAGGA
CTATGATCCAGAGAGTTGTCGCAGCCACAACATGTACTGTTATGGTAGAG
AGGATGAGGAACAGGTAGTCTGCCGCAATTGTCACCTTGCCTATCACTTA
CCCTGTATTCGATGGCAAGATACATGTGGCTGCGATAAAATCGAGAACAT
AAAATTACGGTACTTTTTTACTCATCATTCATATTATTGTTGGTCAAGAC
GTTAATCTTANatcattgtgcaaaaagtcagaaaagaattatgagtcaac
attgagaaaagctatattttcttatttggttaaagggaatttccccaaaa
tacgaaaaCCCGTCTTTTAAGGCGAATAAGAATTTTCCAGGAAAAAACAC
TTCAGCCATTCTTTAAAGAATCTTGCcctccatctttgtacaaaaaatca
gaaaaaagtaatgacaggattttgcacaaag Run BLAST on NCBI protein sequence of TCONS_00021912-protein >TCONS_00021912-protein ID=TCONS_00021912-protein|Name=TCONS_00021912-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MQQLLDCITSGKFGLGPKRFQDWLDAYDKDTLEKSLLASVSKPKVMVNLL
GIALGLNKNLKIVDEEGVSVVCVDDTSLCTMPFILTSGGCLYLAAFEDYD
PESCRSHNMYCYGREDEEQVVCRNCHLAYHLPCIRWQDTCGCDKIENIKL
RYFFTHHSYYCWSRR Run BLAST on NCBI transcript from alignment at sc0000400:36918..38633+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021912 ID=TCONS_00021912|Name=TCONS_00021912|organism=Clytia hemisphaerica|type=transcript|length=1716bp|location=Sequence derived from alignment at sc0000400:36918..38633+ (Clytia hemisphaerica)
GAAAGGAACATGAGGCGAATGATATAATCAATCATAAACTCGACTttgct
ttctttatttttcagaagTCGGTCCCTTACGTTATCTACTGATAAAGAAC
CGGTAGCATTCAAAAGTGTCAATTCTGCGTTGAGCTTCCACTTCCTCGGC
ACGGAAGATCACGAGGATTTCTTTGGGAACCTCTCTTTGGCACTTGCTGT
CAATGAAATGCAGCAGTTACTTGATTGTGTGAGTATTATGTGTCAAGGTT
ATCTGAAGATTTAAATTCAAGTAAAAAACTAAAGACTTTTCCAAAGGTTT
CCTTCTTCCCAAGAagatttttgcattttccagTAAACCCATTTCTGTTT
CTCTTTCTGTTTCAAAGATTACTAGCGGAAAGTTTGGCTTAGGTCCGAAG
AGATTCCAAGATTGGCTCGATGCCTATGACAAAGACACccttgaaaaatc
tcttttggcttCTGTATCGAAACCTAAAGGTATACAAAGATACTCTTTTG
CTATTATGGCTTTTCGGTATATTCCAAAGGCTGATTTTCCAGTCAaacta
ttagctttaaagctataCAGATTTGTGCacattttcgactttaaagaaca
GATACATTAACATTACATTAACATTACATTAACATTGCTTCCTTAAAGGT
TTTTTATGTATTCAACACACTTTATATTGTAaaatctttgaaactgaatt
taatttaaaagtCGAACTAAGCGGCTAGATATCctactgaaaataaattt
tattcttGTATTATATTATATTGTATTATATAGACCCAAAACTACGACTG
ACCATGACATTGGGACATCACGACATAATATAAAACTACGATAAGACAGA
ACGACTGACAAACTCACAAACTCAGGACAGGTCTTCCTCAACGTACTTTC
TGTGCCGATTGATTATTTTTAAACTCGACTatacttttcttaaatttgga
AAGTGGacttgaagtttcaaaattgaattcaaaattacGTCTTTTCCGTC
TTTTACttacttttattttaaagcTTTGAGATCTTTGAAATTTATTCAAT
ACTGAATATTGCAAagttaaaaagtcaaaacatgaTGATGTGGTGTTGCT
TTCTAAAAcatttgatttcttttagtAATGGTGAATTTGTTGGGTATTGC
TTTGggcctcaacaaaaatttaaagattgTAGATGAAGAAGGCGTGAGTG
TTGTTTGCGTCGATGATACCTCGTTATGTACGATGCCATTCATACTCACT
TCTGGCGGATGTTTATATTTGGCTGCCTTTGAGGACTATGATCCAGAGAG
TTGTCGCAGCCACAACATGTACTGTTATGGTAGAGAGGATGAGGAACAGG
TAGTCTGCCGCAATTGTCACCTTGCCTATCACTTACCCTGTATTCGATGG
CAAGATACATGTGGCTGCGATAAAATCGAGAACATAAAATTACGGTACTT
TTTTACTCATCATTCATATTATTGTTGGTCAAGACGTTAATCTTANatca
ttgtgcaaaaagtcagaaaagaattatgagtcaacattgagaaaagctat
attttcttatttggttaaagggaatttccccaaaatacgaaaaCCCGTCT
TTTAAGGCGAATAAGAATTTTCCAGGAAAAAACACTTCAGCCATTCTTTA
AAGAATCTTGCcctccatctttgtacaaaaaatcagaaaaaagtaatgac
aggattttgcacaaag Coding sequence (CDS) from alignment at sc0000400:36918..38633+ >TCONS_00021912 ID=TCONS_00021912|Name=TCONS_00021912|organism=Clytia hemisphaerica|type=CDS|length=1494bp|location=Sequence derived from alignment at sc0000400:36918..38633+ (Clytia hemisphaerica)
ATGCAGCAGTTACTTGATTGTATTACTAGCGGAAAGTTTGGCTTAGGTCC
GAAGAGATTCCAAGATTGGCTCGATGCCTATGACAAAGACACccttgaaa
aatctcttttggcttCTGTATCGAAACCTAAAGtAATGGTGAATTTGTTG
GGTATTGCTTTGggcctcaacaaaaatttaaagattgTAGATGAAGAAGG
CGTGAGTGTTGTTTGCGTCGATGATACCTCGTTATGTACGATGCCATTCA
TACTCACTTCTGGCGGATGTTTATATTTGGCTGCCTTTGAGGACTATGAT
CCAGAGAGTTGTCGCAGCCACAACATGTACTGTTATGGTAGAGAGGATGA
GGAACAGGTAGTCTGCCGCAATTGTCACCTTGCCTATCACTTACCCTGTA
TTCGATGGCAAGATACATGTGGCTGCGATAAAATCGAGAACATAAAATTA
CGGTACTTTTTTACTCATCATTCATATTATTGTTGGTCAAGACGTTAAAT
GCAGCAGTTACTTGATTGTATTACTAGCGGAAAGTTTGGCTTAGGTCCGA
AGAGATTCCAAGATTGGCTCGATGCCTATGACAAAGACACccttgaaaaa
tctcttttggcttCTGTATCGAAACCTAAAGtAATGGTGAATTTGTTGGG
TATTGCTTTGggcctcaacaaaaatttaaagattgTAGATGAAGAAGGCG
TGAGTGTTGTTTGCGTCGATGATACCTCGTTATGTACGATGCCATTCATA
CTCACTTCTGGCGGATGTTTATATTTGGCTGCCTTTGAGGACTATGATCC
AGAGAGTTGTCGCAGCCACAACATGTACTGTTATGGTAGAGAGGATGAGG
AACAGGTAGTCTGCCGCAATTGTCACCTTGCCTATCACTTACCCTGTATT
CGATGGCAAGATACATGTGGCTGCGATAAAATCGAGAACATAAAATTACG
GTACTTTTTTACTCATCATTCATATTATTGTTGGTCAAGACGTTAAATGC
AGCAGTTACTTGATTGTATTACTAGCGGAAAGTTTGGCTTAGGTCCGAAG
AGATTCCAAGATTGGCTCGATGCCTATGACAAAGACACccttgaaaaatc
tcttttggcttCTGTATCGAAACCTAAAGtAATGGTGAATTTGTTGGGTA
TTGCTTTGggcctcaacaaaaatttaaagattgTAGATGAAGAAGGCGTG
AGTGTTGTTTGCGTCGATGATACCTCGTTATGTACGATGCCATTCATACT
CACTTCTGGCGGATGTTTATATTTGGCTGCCTTTGAGGACTATGATCCAG
AGAGTTGTCGCAGCCACAACATGTACTGTTATGGTAGAGAGGATGAGGAA
CAGGTAGTCTGCCGCAATTGTCACCTTGCCTATCACTTACCCTGTATTCG
ATGGCAAGATACATGTGGCTGCGATAAAATCGAGAACATAAAATTACGGT
ACTTTTTTACTCATCATTCATATTATTGTTGGTCAAGACGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021912-exon-sc0000400-1491911889:36918..37145 | TCONS_00021912-exon-sc0000400-1491911889:36918..37145 | Clytia hemisphaerica | exon |
| TCONS_00021912-exon-sc0000400-1510915933:36918..37145 | TCONS_00021912-exon-sc0000400-1510915933:36918..37145 | Clytia hemisphaerica | exon |
| TCONS_00021912-exon-sc0000400-1575043694:36918..37145 | TCONS_00021912-exon-sc0000400-1575043694:36918..37145 | Clytia hemisphaerica | exon |
| TCONS_00021912-exon-sc0000400-1491911889:37285..37396 | TCONS_00021912-exon-sc0000400-1491911889:37285..37396 | Clytia hemisphaerica | exon |
| TCONS_00021912-exon-sc0000400-1510915933:37285..37396 | TCONS_00021912-exon-sc0000400-1510915933:37285..37396 | Clytia hemisphaerica | exon |
| TCONS_00021912-exon-sc0000400-1575043694:37285..37396 | TCONS_00021912-exon-sc0000400-1575043694:37285..37396 | Clytia hemisphaerica | exon |
| TCONS_00021912-exon-sc0000400-1491911889:38043..38633 | TCONS_00021912-exon-sc0000400-1491911889:38043..38633 | Clytia hemisphaerica | exon |
| TCONS_00021912-exon-sc0000400-1510915933:38043..38633 | TCONS_00021912-exon-sc0000400-1510915933:38043..38633 | Clytia hemisphaerica | exon |
| TCONS_00021912-exon-sc0000400-1575043694:38043..38633 | TCONS_00021912-exon-sc0000400-1575043694:38043..38633 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000400 | supercontig | sc0000400:36918..38633 + |
Blast
The following BLAST results are available for this feature:
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