TCONS_00021874 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00021874
Unique Name	TCONS_00021874
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	669

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000396:116596..124721+

transcript sequence

>TCONS_00021874 ID=TCONS_00021874|Name=TCONS_00021874|organism=Clytia hemisphaerica|type=transcript|length=669bp
acTTATCTTCTAGGACACCAAATGGAAAACTAGCAAAGACAAATATCCTA
AGATGGATCTTTTCACGTCCTCAGAGATCGATGGCGAAGATGTATTTTCA
AGCAATAATTTCGTAGACAATTACTTTCACTTTCCAACCCCACCTTCTGG
CTCTGATGATGGTTACTGGACAGATTCGATGAGCAGTTTATCACCGTCCT
CTATCTTCTCTGGTCAAAACAGTTATGGGGAATCGACAGACTTTCCTCGT
CAATTTTCATGTGGAAATTCTAGTCATTTGAAAGAAACTCGTTACCAAAA
AAACGGTGAAGTTACAGAATTCATCAATGGAAGTTCCGGTGATCTTGAAC
GTGTATCTATTGATAATCTTGGCACTTTtcctgtatttcaaaatgatCAC
AGCCTGTTCTCTTTACCTCCACCGACTTCTCTGATGAATTTTCCTGGTAA
TCATGATATCCACATGGAGAATCTAAAAGACGAATTGTTTTGTGGATTCC
ATGAAGAACTAGTAAAGCAATGTGATGTAGCACTAAACGGTACACACGAC
TGTAAACTGGATACTTCAAAAGATATTCAAAGTTTGAGAAGTCCGTTTGA
TGGTTTTCCTGATTCAAATCTGTCATGCACTGGAAAGAGGCTCTCTAATA
ATGTAAGCCATGATGCGTC

Run BLAST on NCBI

transcript from alignment at sc0000396:116596..124721+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00021874 ID=TCONS_00021874|Name=TCONS_00021874|organism=Clytia hemisphaerica|type=transcript|length=8126bp|location=Sequence derived from alignment at sc0000396:116596..124721+ (Clytia hemisphaerica)
acTTATCTTCTAGGACACCAAATGGTATgaccttcaattttcttttacaa
attatgtgttctgatttctaggaaacctttatcccaatatttgtctccct
aaagtTATTACTACTTTATAGTTGGATGTGTTCTAGAAtctagaaaaaac
attttgccaagataaacttgtaagatatttgtttttccgataaagatgtg
ttctgaaccTTTCTAgggttcccagctggcacacaacgttgtttcaacgt
taatctaacgttcacNTTTCCGataaagatgtgttctgaagctttctagg
gttcccagctggcacacaacgttgtttcagcgttaacgtccatttaacgt
tgaattaacattgaaacaacgttgtgtgcctgctGGGTTACTCAAGattt
tcttaactcgaacaatttgTGTTTCCTGTGcgtattcgagttatggagac
tccactataTCCATCAATGGAAGTTTGGGTATCAGTTTCTGCCAGGTTGA
CGAACTTGCATAtatcatttttattgcattatAATCCCGGCTACTTATTT
ACAGACACGACAATTAGTTTTTCGAACATATGCATCGGATATACATGCAT
AAGCAGTCGCTTTAAATCTCTTAAATTTGCTAACTTTTAAGATTTCAATA
TACATTCAGATATCTAAGCAAAATTTAAGGTATATCGCCAATATCAGTGC
TAGTATTTCTTGTTATAAAGACATTTCTTATTTCTTACAGTTGACTATCT
GTTTCTAAATGTCTCTTTTGCTCTTAATACCACATATTTATTGATTCTAA
TAAAACTACTATAGAACAGCGAGCAAGTAATACGAAGTGTAATGAAATAT
TTgagttttgagttttgattttaatCTCATTTGAAAAGATGCAAGGATTC
AGGAGGAGGGGAGCAAAGGTGCGTGGGTATCTTTCTACTGCATACCTCAA
TCAACATATAGTGCTCTCAGATTTTAATTAGTTTTAAGAAGGATTGGGGA
AAGCTTACTGAATTGGAAGGTTTATTTTTGGGTGATTGTTGGTTTGAGAC
GTTGTTTAAGACTTGGTTTCGTGGATCTTGCTGGAGATCATTTTATTGAC
AGTGTAAATGCAACTTTACGGGTGAACGTAATAACGTGAACGTATCTTGT
TCATTAGTttactttttgataattctGATGTACTACGTCCGTtaataaaa
tcagaaaatagTATGCAAGTCGATCTGCTGAGATTGTTCAGCAGGCCCGA
CGGAAGCGGGGAGTCTGGGGAGACCACATCTCCCCCACTTTCATGGTTTG
TATATATACTATTGAGATTGAGACATCGACACTTTTTTATACAGAAACTT
TTCCGTTTGTGGATGGATGTACAGCTAACAGACTCTGTTTATGCACTGTC
CCACATCATTAAAACCTGTCGAGTCTAGCTCAGGTATTTGTCTATTTGAT
TAAAGGTTTTCAGATTTCTGTAAGTGCAAAGATATTAGTGATTCAAACTT
TTAAAGCAATGGAAATTTCTCtattacaactttttaaaattgatgtaatc
tACTGCCTTCCTTTAATCACATTCCAATGTTTAGTGAAATCATACTANNN
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NNccccccaataattttttcaaaaatggttattttgcaaaatacaaagtt
tttctttattaatttgtcataattgtcacaattgagtgcattttcaagca
atctagagctcaaattttcaaaaccccccccccctcgggccaaaccatgg
ttggccctcacggtgtcactaaacttcagccccccccccaataggAAAAT
gtttcctacggcactgatgaATAAGATTTGGTTTCTATATATAAGGACGT
TTAGGTGCTCGTTAACATTTTTAATTCTGGTTGGTATATATAGCAATACG
GTGACATTCAGCTAATTGCTCAAATCGCTTCAAAATTCACTTTCATCTCT
GCACGGAGTCTGCTTTCATCGATCAATTATAATATTGATgccagtgccgt
aggaagcatttccatattggggggggggctgaagtttagtgacaccgcga
gggccaaccatggtttggcccgaaaggggggattttgaaaatttgagctc
tatatagcttgaaaatgcactcaattgtgacaattatgacaaattaaaaa
agaaaaacttttgcaaataaccatttttgaaaaaattattgggggccATA
GCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCCCACTTTCATG
GTTTGTATATATACTATTGAGATTGAGACATAGACACCTTTTTATACAGA
AACTTTTCCGTTTGTGGATGGATGTACAGCTAACAGACTCTGTTTATGCA
CTGACCCACATCATTAAAATCTGTCGAGTCTAGCTCAGGTATTTGTCTAT
TTGATTAAAGGTTTTCAGATTTCTTTGAGCGCAAAGATATTAGAGATTCA
AACTTTTAAAGCAATGGAAATTTCTCtattacaactttttaaaattgatg
taatctACTGCCTTCCTTTAATCACATTCCAATGTTTAGTGAAATCATAC
TAGTTTAGTCTGAATAATTCTTTGTTAATTCTCTCAATGATAAAAACGAT
TCTAATCGCATTAAAGGGTGGTATTAGACTTTATGAAAATCCATTTAAGA
AAGGAAGTAAATTTTTAACCACTTAGATTTATCAAGTTCCTCTAAGTTTT
AAAAACGTTTTACAAAGCACCTAATTCACTGAGATAAAAATTGAATCAGC
TATAGAGAAATTCATTTTGATGGGTTCCCCGCTAAGAATTTTTCGTTGCT
TTTGACTTGtctttcaaaaatctttctattttttaagtaGGAGAAAGCAT
CTTTTAGAGGGGGGCTCATGGCCCCTtgaaaccttgaaattttgaccaga
tGATTTGTTGTTTTGCAAAAGTTTTGTTGGGACACCTGTCTGGTTTGTAT
TTTACAGATGAGAATGTAAGGTTTGGCTAAGATTGCGTATTGACCGATTG
GCTCATTCGATTTGATTGAACTTTTTTTGAAGGCTGGTTTGTAAAATAGA
GACTTATAACGGAATAAAATTGGCCCCATAAATATTAGTACTTTTAGTCC
AGACAGACCTACGATAAATGATCGATGTTAGAGTGGGTACTCGGTGCATC
ACCAAGAAgatgaaagttaaaaaaatttcttctaattttatctaaaaatc
ttaaaaaatctcAATCACACTTTGGGCAGTTTGTAATCGGCAGATCTTAT
TGTGAATCTAccttatcagccctttttacAACGGCTCCAATTTAACGCCG
GCCTCTTTTACACTNccccccctcccccccccccccccagttgctacggc
acggCACTGGATGCTCAATTATAGAAACATTTTGATGGTTTGGCTGGTGG
TCTTAAGAAAAGTATTTTTATGAAGTAGTTCTGCTTCGATGTTGTTTTAG
GAAAACTAGCAAAGACAAATATCCTAAGATGGATCTTTTCACGTCCTCAG
AGATCGATGGCGAAGATGTATTTTCAAGCAATAATTTCGTAGACAATTAC
TTTCACTTTCCAACCCCACCTTCTGGCTCTGATGATGGTTACTGGACAGA
TTCGATGAGCAGTTTATCACCGTCCTCTATCTTCTCTGGTCAAAACAGTT
ATGGGGAATCGACAGACTTTCCTCGTCAATTTTCATGTGGAAATTCTAGT
CATTTGAAAGAAACTCGTTACCAAAAAAACGGTGAAGTTACAGAATTCAT
CAATGGAAGTTCCGGTGATCTTGAACGTGTATCTATTGATAATCTTGGCA
CTTTtcctgtatttcaaaatgatCACAGCCTGTTCTCTTTACCTCCACCG
ACTTCTCTGATGAATTTTCCTGGTAATCATGATATCCACATGGAGAATCT
AAAAGACGAATTGTTTTGTGGATTCCATGAAGAACTAGTAAAGCAATGTG
ATGTAGCACTAAACGGTATTTAATTCTTTTAAACGCTCTCATAAATCTCT
CCACCAGAACCACCCTAGCAAACAATTTTCTCGGTCGAAAGTTGGCaatc
tttaaatattttgaatatttagaCCCCGATAATTCTTTtgctaattttat
ttgaaagttatTTACTTTTCAGTTTCAAGTGATAATGCTAATCAAACTAA
TATTAAATTCAATGTCGCAATGAGCTTCTTGACCTTGAATATGTTTTTTA
AGAATTGAAACACAAAAACACCCCTTACAGCCCTAGTGAAACTTTTTcca
atcccaatggggatacaAATTTAGTTCCTTGGTCAAAAAATCCAGTTTTG
GAATTGaattaaattgaattttaaatgagGATGgaaacaaagtcaatttt
tcagaGGGGCAGAAATTGTCGGGTATTTCACCGCTTCGGACGAAATTTTA
GCTAAGTTTTCCAGTGGGTGGGGTCCCAcctggtctgtgacacaggcGTG
TAAAACAGGTCTACTTTGAATGACTGAGATCATCTTTTTCGCATAGGTAC
ACACGACTGTAAACTGGATACTTCAAAAGATATTCAAAGTTTGAGAAGTC
CGTTTGATGGTTTTCCTGATTCAAATCTGTCATGCACTGGAAAGAGGCTC
TCTAATAATGTAAGCCATGATGCGTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012273	XLOC_012273	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00021874-exon-sc0000396-1491911889:116596..116619	TCONS_00021874-exon-sc0000396-1491911889:116596..116619	Clytia hemisphaerica	exon
TCONS_00021874-exon-sc0000396-1510915933:116596..116619	TCONS_00021874-exon-sc0000396-1510915933:116596..116619	Clytia hemisphaerica	exon
TCONS_00021874-exon-sc0000396-1575043694:116596..116619	TCONS_00021874-exon-sc0000396-1575043694:116596..116619	Clytia hemisphaerica	exon
TCONS_00021874-exon-sc0000396-1491911889:123546..124060	TCONS_00021874-exon-sc0000396-1491911889:123546..124060	Clytia hemisphaerica	exon
TCONS_00021874-exon-sc0000396-1510915933:123546..124060	TCONS_00021874-exon-sc0000396-1510915933:123546..124060	Clytia hemisphaerica	exon
TCONS_00021874-exon-sc0000396-1575043694:123546..124060	TCONS_00021874-exon-sc0000396-1575043694:123546..124060	Clytia hemisphaerica	exon
TCONS_00021874-exon-sc0000396-1491911889:124592..124721	TCONS_00021874-exon-sc0000396-1491911889:124592..124721	Clytia hemisphaerica	exon
TCONS_00021874-exon-sc0000396-1510915933:124592..124721	TCONS_00021874-exon-sc0000396-1510915933:124592..124721	Clytia hemisphaerica	exon
TCONS_00021874-exon-sc0000396-1575043694:124592..124721	TCONS_00021874-exon-sc0000396-1575043694:124592..124721	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000396	supercontig	sc0000396:116596..124721 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	1.89787	0.532691	0.0437944	0	0	0.949495	1.22979	0.600548	1.56596	3.36698	0.884306	3.77862	0	0	0	0	0.301392	0.348865

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00021874 vs. Swiss-Prot (Human)

BLAST of TCONS_00021874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00021874 (transcript) - C. hemisphaerica