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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021872 ID=TCONS_00021872|Name=TCONS_00021872|organism=Clytia hemisphaerica|type=transcript|length=3208bpRun BLAST on NCBI protein sequence of TCONS_00021872-protein >TCONS_00021872-protein ID=TCONS_00021872-protein|Name=TCONS_00021872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=777bp VNKIVIQNEKDIVIPLFTSIFISFTSGRHMVANFIQSYKVMYKDENNAWRRun BLAST on NCBI transcript from alignment at sc0000396:50031..57449+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021872 ID=TCONS_00021872|Name=TCONS_00021872|organism=Clytia hemisphaerica|type=transcript|length=7419bp|location=Sequence derived from alignment at sc0000396:50031..57449+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000396:50031..57449+ >TCONS_00021872 ID=TCONS_00021872|Name=TCONS_00021872|organism=Clytia hemisphaerica|type=CDS|length=28008bp|location=Sequence derived from alignment at sc0000396:50031..57449+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021872 vs. Swiss-Prot (Human)
Match: LRP1 (Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 1.177e-27 Identity = 82/222 (36.94%), Postives = 110/222 (49.55%), Query Frame = 3
Query: 417 EFRCGNGSCIPNLWVCDGKQQCSDGGDENVCNGNCSADQFHCRSGYCLPKQFRCDQDNDCFHGDDEMHCDN--TTCNIFQFRCNDGSCIHLSQKCDGRVDCSTGEDEKSCXXXXXXXXXXXXXXXXXXXXXXXVC---NGFKCRYGGKCLSNDLICDGTRDCGGWGEDEEC---------CNTKTQYRCSHRPGAHVGKCIQASRRCDGYNDCGDSSDEFNC 1040
EF C NG CI W CDG C+DG DE C C DQF C+SG+C+P ++RCD D DC G DE C TC + +F+CN+ C L+ KCDG DC DE AR VC F+C+ CL CDGT +CG ++E+C C K ++ C ++ +C+ +S RC+ ++DCGD SDE +C
Sbjct: 3579 EFSCANGRCIAGRWKCDGDHDCADGSDEKDCTPRCDMDQFQCKSGHCIPLRWRCDADADCMDGSDEEACGTGVRTCPLDEFQCNNTLCKPLAWKCDGEDDCGDNSDENP------------------EECARFVCPPNRPFRCKNDRVCLWIGRQCDGTDNCGDGTDEEDCEPPTAHTTHCKDKKEFLCRNQ------RCLSSSLRCNMFDDCGDGSDEEDC 3776 HSP 2 Score: 109.768 bits (273), Expect = 5.404e-24 Identity = 79/217 (36.41%), Postives = 101/217 (46.54%), Query Frame = 3
Query: 417 EFRCGNGSCIPNLWVCDGKQQCSDGGDENVCNGNCSADQFHCRSGYCLPKQFRCDQDNDCFHGDDEMHCDNTT--------CNIFQFRCN-DGSCIHLSQKCDGRVDCSTGEDEKSCXXXXXXXXXXXXXXXXXXXXXXXVCN---GFKCRYGGKCLSNDLICDGTRDCGGWGEDEECCNTKTQYRCSHRPGAHVGKCIQASRRCDGYNDCGDSSDE 1031
+F C NG CI W CD C D DE C+ +CS+ QF C SG C+P+ + CD DNDC DE H + T C+ +F+C DG CI L +CDG DC DEKSC VC+ F C+ +C+S +CDG DC DEE C + SH + C+ + CDG +DCGD SDE
Sbjct: 981 QFTCNNGRCININWRCDNDNDCGDNSDEAGCSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC------------------EGVTHVCDPSVKFGCKDSARCISKAWVCDGDNDCED-NSDEENCESLACRPPSHPCANNTSVCLPPDKLCDGNDDCGDGSDE 1178 HSP 3 Score: 98.5969 bits (244), Expect = 1.325e-20 Identity = 76/215 (35.35%), Postives = 102/215 (47.44%), Query Frame = 3
Query: 417 EFRCGN-GSCIPNLWVCDGKQQCSDGGDE--NVCNGN-CSADQFHCRSGYCLPKQFRCDQDNDCFHGDDEMHCDNTTCNIFQFRCNDGSCIHLSQKCDGRVDCSTGEDEKSCXXXXXXXXXXXXXXXXXXXXXXXVCNGFKCRYGGKCLSNDLICDGTRDCGGWGEDEECCNTKT------QYRCSHRPGAHVGKCIQASRRCDGYNDCGDSSDE 1031
EFRC + G CIP W CDG+ C DG DE C+ C QF C++ C+P +++CD DNDC DE C C+ +F C +G CI KCDG DC+ G DEK C + F+C+ G C+ CD DC G DEE C T +++C++ C + +CDG +DCGD+SDE
Sbjct: 3498 EFRCKDSGRCIPARWKCDGEDDCGDGSDEPKEECDERTCEPYQFRCKNNRCVPGRWQCDYDNDCGDNSDEESCTPRPCSESEFSCANGRCIAGRWKCDGDHDCADGSDEKDCTPRCDM-------------------DQFQCK-SGHCIPLRWRCDADADCMD-GSDEEACGTGVRTCPLDEFQCNNT------LCKPLAWKCDGEDDCGDNSDE 3685 HSP 4 Score: 93.9745 bits (232), Expect = 3.546e-19 Identity = 74/212 (34.91%), Postives = 97/212 (45.75%), Query Frame = 3
Query: 417 EFRCGNGSCIPNLWVCDGKQQCSDGGDE--NVCNGNCSADQFHCRSGYCLPKQFRCDQDNDCFHGDDEMHCDNTTCNIFQFRC-NDGSCIHLSQKCDGRVDCSTGEDEKSCXXXXXXXXXXXXXXXXXXXXXXXVCNGFKCRYGGKCLSNDLICDGTRDCGGWGEDEECCNTKT----QYRCSHRPGAHVGKCIQASRRCDGYNDCGDSSDE 1031
+F C N CIP W CD + C D DE + C QF C +G C F CD DNDC DE +CD C QF+C N CI +C+G+ +C GEDE+ CP T +P N F+C +C+ +CD DC ++ C T ++RC G+CI A +CDG +DCGD SDE
Sbjct: 3338 QFVCKNDKCIPFWWKCDTEDDCGDHSDEPPDCPEFKCRPGQFQCSTGICTNPAFICDGDNDCQDNSDEANCDIHVCLPSQFKCTNTNRCIPGIFRCNGQDNCGDGEDERDCPEVTCAP------------------NQFQCSITKRCIPRVWVCDRDNDCVDGSDEPANCTQMTCGVDEFRCKDS-----GRCIPARWKCDGEDDCGDGSDE 3526 HSP 5 Score: 91.2781 bits (225), Expect = 2.413e-18 Identity = 74/212 (34.91%), Postives = 100/212 (47.17%), Query Frame = 3
Query: 417 EFRCGNGSCIPNLWVCDGKQQCSDGGDEN--VCNGN-CSADQFHCRSGYCLPKQFRCDQDNDCFHGDDEMH--CDNTTCNIFQFRCNDGSCIHLSQKCDGRVDCSTGEDEKSCXXXXXXXXXXXXXXXXXXXXXXXVCNGFKCRYGGKCLSNDLICDGTRDCGGWGEDEECCN--TKTQYRCSHRPGAHVGKCIQASRRCDGYNDCGDSSDE 1031
EF C N CI W CDG C D DE +C+ + C +D+F C + C+P ++ CD DNDC + +DE + C TC QF C G CI +S CD DC DE + T T F C G+C++ + CD DCG ++ C + + TQ++C+ G+CI CDG NDCGD SDE
Sbjct: 858 EFACANSRCIQERWKCDGDNDCLDNSDEAPALCHQHTCPSDRFKCENNRCIPNRWLCDGDNDCGNSEDESNATCSARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQ----------------FTCN-NGRCININWRCDNDNDCGDNSDEAGCSHSCSSTQFKCNS------GRCIPEHWTCDGDNDCGDYSDE 1046 HSP 6 Score: 89.3521 bits (220), Expect = 1.103e-17 Identity = 69/211 (32.70%), Postives = 94/211 (44.55%), Query Frame = 3
Query: 420 FRCGNGSCIPNLWVCDGKQQCSDGGDENVCNGNCSADQFHCRSGYCLPKQFRCDQDNDCFHGDDE-MHCDNTTCNIFQFRC-NDGSCIHLSQKCDGRVDCSTGEDEKSCXXXXXXXXXXXXXXXXXXXXXXXVCNGFKCRYGGKCLSNDLICDGTRDCGGWGEDEECCNTKT----QYRCSHRPGAHVGKCIQASR-RCDGYNDCGDSSDE 1031
F C +G CIP W CD + C G DE CN CS QF C++ C+ KQ+ CD +DC G DE HC+ TC F C C+ CDG DC+ G DE + F C+ +C+ +CD RDC ++ C T ++RC++ G+C+ + + CDG NDC D SDE
Sbjct: 2701 FACPSGRCIPMSWTCDKEDDCEHGEDETHCNKFCSEAQFECQNHRCISKQWLCDGSDDCGDGSDEAAHCEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTCDDRE--------------FMCQ-NRQCIPKHFVCDHDRDCADGSDESPECEYPTCGPSEFRCAN------GRCLSSRQWECDGENDCHDQSDE 2890 HSP 7 Score: 88.9669 bits (219), Expect = 1.171e-17 Identity = 70/212 (33.02%), Postives = 94/212 (44.34%), Query Frame = 3
Query: 417 EFRCGNGSCIPNLWVCDGKQQCSDGGDE--NVCNGN-CSADQFHCRSGYCLPKQFRCDQDNDCFHGDDEMHCDNTTCNIFQFRCNDGSCIHLSQKCDGRVDCSTGEDEKSCXXXXXXXXXXXXXXXXXXXXXXXVCNGFKCRYGGKCLSNDLICDGTRDCGGWGEDEECCNTKTQYRCSHRPGA-HVGKCIQASRRCDGYNDCGDSSDEFNC 1040
EF C NG CI CDG C D DE + CN C C +G C+ C+ +DC G DE+ C+ T C + +FRC DG+CI S +C+ VDC DE +C T S + C C + +CDG DCG + ++ +C K + RC A G+CI S CD +DC DE +C
Sbjct: 2529 EFECANGECINFSLTCDGVPHCKDKSDEKPSYCNSRRCKKTFRQCSNGRCVSNMLWCNGADDCGDGSDEIPCNKTACGVGEFRCRDGTCIGNSSRCNQFVDCEDASDEMNCSATDCSSYFRLGVKGVLFQ---------PCERTSLCYAPSWVCDGANDCGDYSDERDCPGVK-RPRCPLNYFACPSGRCIPMSWTCDKEDDCEHGEDETHC 2730 HSP 8 Score: 83.5741 bits (205), Expect = 5.837e-16 Identity = 73/217 (33.64%), Postives = 92/217 (42.40%), Query Frame = 3
Query: 423 RCGNGSCIPNLWVCDGKQQCSDGGDENVCNGN-CSADQFHCRSGYCLPKQFRCDQDNDCFHGDDEMHCDNTTCN----------IFQFRCNDGSCIHLSQKCDGRVDCSTGEDEKSCXXXXXXXXXXXXXXXXXXXXXXXVCNGFKCRYGGKCLSNDLICDGTRDCGGWGEDEECCN---TKTQYRCSHRPGAHVGKCIQASRRCDGYNDCGDSSDE 1031
+C NG C+ N+ C+G C DG DE CN C +F CR G C+ RC+Q DC DEM+C T C+ +FQ C S CDG DC DE+ CP N F C G+C+ CD DC GEDE CN ++ Q+ C + +CI CDG +DCGD SDE
Sbjct: 2572 QCSNGRCVSNMLWCNGADDCGDGSDEIPCNKTACGVGEFRCRDGTCIGNSSRCNQFVDCEDASDEMNCSATDCSSYFRLGVKGVLFQPCERTSLCYAPSWVCDGANDCGDYSDERDCPGVKRPRCP---------------LNYFACP-SGRCIPMSWTCDKEDDCEH-GEDETHCNKFCSEAQFECQNH------RCISKQWLCDGSDDCGDGSDE 2765 HSP 9 Score: 82.8037 bits (203), Expect = 8.827e-16 Identity = 62/200 (31.00%), Postives = 91/200 (45.50%), Query Frame = 3
Query: 429 GNGSCIPNLWVCDGKQQCSDGGDENVC-----NGNCSADQFHCRSGYCLPKQFRCDQDNDCFHGDDEM-HCDNTTCNIFQFRCNDGSCIHLSQ-KCDGRVDCSTGEDEKSCXXXXXXXXXXXXXXXXXXXXXXXVCNGFKCRYGGKCLSNDLICDGTRDCGGWGED-----------------EECCNTKTQYRCSHRPG 956
G C+P W+CDG + C+DG DE++ N C +F C++ C+PK F CD D DC G DE C+ TC +FRC +G C+ Q +CDG DC DE P T+ + F C G+C++ L+C+G DCG ++ ++C + K ++C RPG
Sbjct: 2783 GTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTCDDREFMCQNRQCIPKHFVCDHDRDCADGSDESPECEYPTCGPSEFRCANGRCLSSRQWECDGENDCHDQSDEAP-----------KNPHCTSQEHKCNASSQFLCS-SGRCVAEALLCNGQDDCGDSSDERGCHINECLSRKLSGCSQDCEDLKIGFKCRCRPG 2970 The following BLAST results are available for this feature:
BLAST of TCONS_00021872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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