|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021801 ID=TCONS_00021801|Name=TCONS_00021801|organism=Clytia hemisphaerica|type=transcript|length=1304bp
ATTCACCGTTAATATATCtttcaaatactaaaataatacaataatggAAT
AATATTAATTTGGTATTTTTGCTTCGTTAAATGATCATATGTAACCTAAT
ACCCGGGAAGGGGGGTGcttaggcaaaatggatgcCGGGTATTTGCGAAC
CAtgaagggtccctttttcacaccctcgaaagtccctcaaagggatACTA
AAACCGTTAAAAGTAAACTGAGTCCCTTCCAAAATTACGAGAATCAAAAA
TCGACTCATAAatggtcataaattcttgaaatttggactaaaatttgaaa
attttggctgaaactttGGTGAAGTAGTCTCTCTAAAGTTAGCAATTTTa
gcaacaaaatttttgaaattcagtgTATCTaaaagtcgattttcaaactt
tggctcggacatacctgtCATCTCACAAACCTAGTATTCGCCTCCCCCGG
GTCTAATACATCGTTCACGACGTGCAATGTTAGTTATGTATAATCATAAC
gacacacaaaaacaaaaacaaagaacgaactaaaaattaaaaactaaagA
TTCAGTAACAAATAagatttgagaaattttagACAGTTACGGTACGTGTT
ATAGTTTTAAGGagaattaaaataaaacaaagatttattataaaaaatat
tgatacCCTATTAGCTATTGGGAATAAATAGTTACAGGTAAATTTTCAAg
taatttgtaaagtttttttggtgaaatttctcgaaaatgtttaaaatctc
ACAATAGTTATCAACCACGATTTAGGAGCCTGGGCACGACTTCAACTCGG
TCCTGCCATTTAACAGTTCATCTTGGGAGTTTTTATATTGTTAGCATGGT
TAAGAACTTGCCAGCATAAATTGTATTTTCCCAAGCTTAATTGAGAATCA
AGTAACTTCAGAAACACGATACTGCTTTGTTGTGTGGCAAGCACTGGTTC
AATTATTTCTCTATCCCAGAATAGGAAATTTTCCCAAGAAGCCACTGGCG
GGATTAATTCTATCTTACTGTCAACCCTGCTAAAATCTATGTGCTCAAAA
CAGTATACAGCAATGATGATCCCCATGGAGCGCACAGCTTTTATTGCACT
GCTTATTGACTTGACGTGGACCAGGTGCTTATTGACTTGGCGTGGACCAG
GTGCTTATTGACTTGGCGTGGACCAGGTGCTTATAGACTTGGCGTGGAGC
AGGTGCTTATAGACTTGGCGTGGAGCAGGTGCTTATTGACTTGCCGTGGA
GCAGGTGCTTATAAATTTGGCGTGGAGCAGGTGCTTATAGACTTGGCGTA
GGAG Run BLAST on NCBI transcript from alignment at sc0000395:119583..121172+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021801 ID=TCONS_00021801|Name=TCONS_00021801|organism=Clytia hemisphaerica|type=transcript|length=1590bp|location=Sequence derived from alignment at sc0000395:119583..121172+ (Clytia hemisphaerica)
ATTCACCGTTAATATATCtttcaaatactaaaataatacaataatggAAT
AATATTAATTTGGTATTTTTGCTTCGTTAAATGATCATATGTAACCTAAT
ACCCGGGAAGGGGGGTGcttaggcaaaatggatgcCGGGTATTTGCGAAC
CAtgaagggtccctttttcacaccctcgaaagtccctcaaagggatACTA
AAACCGTTAAAAGTAAACTGAGTCCCTTCCAAAATTACGAGAATCAAAAA
TCGACTCATAAatggtcataaattcttgaaatttggactaaaatttgaaa
attttggctgaaactttGGTGAAGTAGTCTCTCTAAAGTTAGCAATTTTa
gcaacaaaatttttgaaattcagtgTATCTaaaagtcgattttcaaactt
tggctcggacatacctgtCATCTCACAAACCTAGTATTCGCCTCCCCCGG
GTCTAATACATCGTTCACGACGTGCAATGTTAGTTATGTATAATCATAAC
gacacacaaaaacaaaaacaaagaacgaactaaaaattaaaaactaaagA
TTCAGTAACAAATAagatttgagaaattttagACAGTTACGGTACGTGTT
ATAGTTTTAAGGagaattaaaataaaacaaagatttattataaaaaatat
tgatacCCTATTAGCTATTGGGAATAAATAGTTACAGGTAAATTTTCAAg
taatttgtaaagtttttttggtgaaatttctcgaaaatgtttaaaatctc
ACAATAGTTATCAACCACGATTTAGGAGCCTGGGCACGACTTCAACTCGG
TCCTGCCATTTAACAGTTCATCTTGGGAGTTTTTATATTGTTAGCATGGT
TAAGAACTTGCCAGCATAAATTGTATTTTCCCAAGCTTAATTGAGAATCA
AGTAACTTCAGAAACACGATACTGCTTTGTTGTGTGGCAAGCACTGGTTC
AATTATTTCTCTATCCCAGAATAGGAAATTTTCCCAAGAAGCCACTGGCG
GGATTAATTCTATCTTACTGTCAACCCTGCTAAAATCTATGTGCTCAAAA
CAGTATACAGCAATGATGATCCCCATGGAGCGCACAGCTTTTATTGCACT
GCTTATTGACTTGACGTGGACCAGGTGCTTATTGAGTCGGCGTGGAGCAG
ATGCTTATTGACTTGGCGTGGAGCAGGTGCTTATTGACTTGGCCAGGAGC
AGGTGCTTATAGACTTGGCGTGGAGCAGGTGCTTATTGACTTGGCGTGGA
CCAGGTGCTTATAGACTTGGCGTGGAGCAGGTGCTTATAGACTTGGCGTG
GAGCAGGTGCTTATAGACTTGGCGTGGAGCACGTGCTTATAGACTTGGCG
TGGAGCAGGTGCTTATAGACTTGGCGTGGAGCAGGTGCTTATTGACTTGG
CGTGGACCAGGTGCTTATAGACTTGGCGTGGAGCAGGTGCTTATAGACTT
GGCGTGGAGCAGGTGCTTATAGACTTGGCGTGGAGCAGGTGCTTATAAAT
TTGGCGTGGAGCAGGTGCTTATTGACTTGCCGTGGAGCAGGTGCTTATAA
ATTTGGCGTGGAGCAGGTGCTTATAGACTTGGCGTAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021801-exon-sc0000395-1491911889:119583..120706 | TCONS_00021801-exon-sc0000395-1491911889:119583..120706 | Clytia hemisphaerica | exon |
| TCONS_00021801-exon-sc0000395-1510915933:119583..120706 | TCONS_00021801-exon-sc0000395-1510915933:119583..120706 | Clytia hemisphaerica | exon |
| TCONS_00021801-exon-sc0000395-1575043694:119583..120706 | TCONS_00021801-exon-sc0000395-1575043694:119583..120706 | Clytia hemisphaerica | exon |
| TCONS_00021801-exon-sc0000395-1491911889:120811..120836 | TCONS_00021801-exon-sc0000395-1491911889:120811..120836 | Clytia hemisphaerica | exon |
| TCONS_00021801-exon-sc0000395-1510915933:120811..120836 | TCONS_00021801-exon-sc0000395-1510915933:120811..120836 | Clytia hemisphaerica | exon |
| TCONS_00021801-exon-sc0000395-1575043694:120811..120836 | TCONS_00021801-exon-sc0000395-1575043694:120811..120836 | Clytia hemisphaerica | exon |
| TCONS_00021801-exon-sc0000395-1491911889:120967..121044 | TCONS_00021801-exon-sc0000395-1491911889:120967..121044 | Clytia hemisphaerica | exon |
| TCONS_00021801-exon-sc0000395-1510915933:120967..121044 | TCONS_00021801-exon-sc0000395-1510915933:120967..121044 | Clytia hemisphaerica | exon |
| TCONS_00021801-exon-sc0000395-1575043694:120967..121044 | TCONS_00021801-exon-sc0000395-1575043694:120967..121044 | Clytia hemisphaerica | exon |
| TCONS_00021801-exon-sc0000395-1491911889:121097..121172 | TCONS_00021801-exon-sc0000395-1491911889:121097..121172 | Clytia hemisphaerica | exon |
| TCONS_00021801-exon-sc0000395-1510915933:121097..121172 | TCONS_00021801-exon-sc0000395-1510915933:121097..121172 | Clytia hemisphaerica | exon |
| TCONS_00021801-exon-sc0000395-1575043694:121097..121172 | TCONS_00021801-exon-sc0000395-1575043694:121097..121172 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000395 | supercontig | sc0000395:119583..121172 + |
Blast
The following BLAST results are available for this feature:
|
