|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021791 ID=TCONS_00021791|Name=TCONS_00021791|organism=Clytia hemisphaerica|type=transcript|length=1300bp
NNCAGATATAAACATTGCTTCTCATCACTAGAAGCTCCTTTTGTAGAACT
CCCACAAGGCCAGGATGCATGTGGAAGGTTAAAATCTCCTAGCAAGAATA
TGTCTGGTAAGGTATTTTCCGCAAAAGTATTAAAAGTATCTCTcatcttt
tttaatatttcagaaaattctttcgAGGTTGATGGATGACCATGAGATGA
GTCATCTGGTTGTCGATAAATAACAGATATCAATATGTTTAATTTCTTGG
AGTGAACAATTAGCAGTCNCTAGCTTTGGTCTTACTATGTCTTTTCGcat
aagaaaagaaatattttggatttaGTTTGATCGCCTCACAAGCTTTCTTT
TCTGCAGTTATAGTACTCTTCCTGTATGAggtttgtaattgtttttcaaT
ATCAACGCGttgggttttgattttttttaatctgaaaaCAGTTTCTTGCT
GAGATGAATCTTTTTTCTAGCTTAGAACGCCTCCTCATTAGAATCCTCCT
TTCTCTcggaattattttatttttgttcgttTTGTAAGGTTTCCTAATTG
GAACAAATTTTTCTACGAttttttcgcatattttcaacagtttttcaaat
ttttctacaGATTTTAATTCATAATATTCATTGTCCTNatgaaaagtgaa
tttttctcatgTAAAATATCACTTACAAATGGGACAGATGATTGGACAGT
TAATGGTTTTAGTCCTTGAATGTTGAGTAGAGTAAATGATTCTAAGCTTG
CATCATATGCTGGTTGTCCATGTGGTGTTGAAAGATTGGTTGAGTTGacc
attggttgaaatttgggaCTTGATTCATAAGCCTTGGTGGTGGTTGAGGT
TGATTTTTGTTCATCTCTGCAATGCAAACTTTTTGTCCATTGTCTGTAAA
ATCTCGTTTTTCAGATTTTGGATGAGTATTAGAAAATCCCTCTCCTTATC
ACTGGCATCAGGAATTTCGCCAGGGACTCTCAAATTTGTATCTTTCCTGT
ATTTTAACAGTTAGTGTTCCCTTGACATGTACAAATTTGCACGATTTGTC
AAGACATTTATTGTATTTGATAGAGTTggaatcttaccctgggtttacta
aaaaaaccgcgattgaaaagatgaaccagctcaagagcgacagccatttg
tttcaatgtgggtcgagaattttctggtgccgtggtcagcgctaaatcgc
gttggaaagaaaatagatacctggatccagttttttttacttgtttccct
gataattcctgattgatttaaaaaaaaagaatgaacagatttggatgatt Run BLAST on NCBI transcript from alignment at sc0000394:224990..226289 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021791 ID=TCONS_00021791|Name=TCONS_00021791|organism=Clytia hemisphaerica|type=transcript|length=1300bp|location=Sequence derived from alignment at sc0000394:224990..226289 (Clytia hemisphaerica)
aatcatccaaatctgttcattctttttttttaaatcaatcaggaattatc
agggaaacaagtaaaaaaaactggatccaggtatctattttctttccaac
gcgatttagcgctgaccacggcaccagaaaattctcgacccacattgaaa
caaatggctgtcgctcttgagctggttcatcttttcaatcgcggtttttt
tagtaaacccagggtaagattccAACTCTATCAAATACAATAAATGTCTT
GACAAATCGTGCAAATTTGTACATGTCAAGGGAACACTAACTGTTAAAAT
ACAGGAAAGATACAAATTTGAGAGTCCCTGGCGAAATTCCTGATGCCAGT
GATAAGGAGAGGGATTTTCTAATACTCATCCAAAATCTGAAAAACGAGAT
TTTACAGACAATGGACAAAAAGTTTGCATTGCAGAGATGAACAAAAATCA
ACCTCAACCACCACCAAGGCTTATGAATCAAGtcccaaatttcaaccaat
ggtCAACTCAACCAATCTTTCAACACCACATGGACAACCAGCATATGATG
CAAGCTTAGAATCATTTACTCTACTCAACATTCAAGGACTAAAACCATTA
ACTGTCCAATCATCTGTCCCATTTGTAAGTGATATTTTAcatgagaaaaa
ttcacttttcatNAGGACAATGAATATTATGAATTAAAATCtgtagaaaa
atttgaaaaactgttgaaaatatgcgaaaaaaTCGTAGAAAAATTTGTTC
CAATTAGGAAACCTTACAAaacgaacaaaaataaaataattccgAGAGAA
AGGAGGATTCTAATGAGGAGGCGTTCTAAGCTAGAAAAAAGATTCATCTC
AGCAAGAAACTGttttcagattaaaaaaaatcaaaacccaaCGCGTTGAT
AttgaaaaacaattacaaaccTCATACAGGAAGAGTACTATAACTGCAGA
AAAGAAAGCTTGTGAGGCGATCAAACtaaatccaaaatatttcttttctt
atgCGAAAAGACATAGTAAGACCAAAGCTAGNGACTGCTAATTGTTCACT
CCAAGAAATTAAACATATTGATATCTGTTATTTATCGACAACCAGATGAC
TCATCTCATGGTCATCCATCAACCTcgaaagaattttctgaaatattaaa
aaagatgAGAGATACTTTTAATACTTTTGCGGAAAATACCTTACCAGACA
TATTCTTGCTAGGAGATTTTAACCTTCCACATGCATCCTGGCCTTGTGGG
AGTTCTACAAAAGGAGCTTCTAGTGATGAGAAGCAATGTTTATATCTGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021791-exon-sc0000394-1491911889:224990..226289 | TCONS_00021791-exon-sc0000394-1491911889:224990..226289 | Clytia hemisphaerica | exon |
| TCONS_00021791-exon-sc0000394-1510915933:224990..226289 | TCONS_00021791-exon-sc0000394-1510915933:224990..226289 | Clytia hemisphaerica | exon |
| TCONS_00021791-exon-sc0000394-1575043694:224990..226289 | TCONS_00021791-exon-sc0000394-1575043694:224990..226289 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000394 | supercontig | sc0000394:224990..226289 . |
Blast
The following BLAST results are available for this feature:
|
