TCONS_00021787 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021787
Unique NameTCONS_00021787
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021787 ID=TCONS_00021787|Name=TCONS_00021787|organism=Clytia hemisphaerica|type=transcript|length=518bp
GAAGAAGTGGATCAATTTGAAACAAAAGttgaagattttttccaaaaaat
gaaagAGTTTTGTGGTGATGATGCCATAAAGAGAAAACCATACCTTCACA
TACTAAGGGAACACATTCCACCTATTTTGAAGCTATGGTTTTCAATTCTT
GGCTGGGGCTATGGCTATTTTCATTGTTCAGCTGGAGAACATCTTAACAA
GCAGATGAAAACCCTTGAGCGTTACGGTACCAATAACAAAGATAAtcgtt
ttatcaaaattttaaagaaaatccgCCTGCAACAGTTCCATTTTAGTCAG
AGTGTCTTGAAAAACGAGTCCAGCATCACTTTCAGCCGATGTCATGAGGT
TGGGCACAACCGTAAGAACAAGGCATGTCGTTTGCACCCTGAACAACCAG
TGGAATATCATCCACCTACTGACACAGAGGACAATTAAAAGTTAAATTAG
TTCTAGCAAAGATGCAGtttaaattttgtaaaagtttgTCCAGGTTTGCC
CATATGTTTTAATAactt
Run BLAST on NCBI

protein sequence of TCONS_00021787-protein

>TCONS_00021787-protein ID=TCONS_00021787-protein|Name=TCONS_00021787-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
EEVDQFETKVEDFFQKMKEFCGDDAIKRKPYLHILREHIPPILKLWFSIL
GWGYGYFHCSAGEHLNKQMKTLERYGTNNKDNRFIKILKKIRLQQFHFSQ
SVLKNESSITFSRCHEVGHNRKNKACRLHPEQPVEYHPPTDTEDN
Run BLAST on NCBI

transcript from alignment at sc0000394:35931..36448

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021787 ID=TCONS_00021787|Name=TCONS_00021787|organism=Clytia hemisphaerica|type=transcript|length=518bp|location=Sequence derived from alignment at sc0000394:35931..36448 (Clytia hemisphaerica)
aagtTATTAAAACATATGGGCAAACCTGGAcaaacttttacaaaatttaa
aCTGCATCTTTGCTAGAACTAATTTAACTTTTAATTGTCCTCTGTGTCAG
TAGGTGGATGATATTCCACTGGTTGTTCAGGGTGCAAACGACATGCCTTG
TTCTTACGGTTGTGCCCAACCTCATGACATCGGCTGAAAGTGATGCTGGA
CTCGTTTTTCAAGACACTCTGACTAAAATGGAACTGTTGCAGGcggattt
tctttaaaattttgataaaacgaTTATCTTTGTTATTGGTACCGTAACGC
TCAAGGGTTTTCATCTGCTTGTTAAGATGTTCTCCAGCTGAACAATGAAA
ATAGCCATAGCCCCAGCCAAGAATTGAAAACCATAGCTTCAAAATAGGTG
GAATGTGTTCCCTTAGTATGTGAAGGTATGGTTTTCTCTTTATGGCATCA
TCACCACAAAACTctttcattttttggaaaaaatcttcaaCTTTTGTTTC
AAATTGATCCACTTCTTC

Coding sequence (CDS) from alignment at sc0000394:35931..36448

>TCONS_00021787 ID=TCONS_00021787|Name=TCONS_00021787|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at sc0000394:35931..36448 (Clytia hemisphaerica)
TTAATTGTCCTCTGTGTCAGTAGGTGGATGATATTCCACTGGTTGTTCAG
GGTGCAAACGACATGCCTTGTTCTTACGGTTGTGCCCAACCTCATGACAT
CGGCTGAAAGTGATGCTGGACTCGTTTTTCAAGACACTCTGACTAAAATG
GAACTGTTGCAGGcggattttctttaaaattttgataaaacgaTTATCTT
TGTTATTGGTACCGTAACGCTCAAGGGTTTTCATCTGCTTGTTAAGATGT
TCTCCAGCTGAACAATGAAAATAGCCATAGCCCCAGCCAAGAATTGAAAA
CCATAGCTTCAAAATAGGTGGAATGTGTTCCCTTAGTATGTGAAGGTATG
GTTTTCTCTTTATGGCATCATCACCACAAAACTctttcattttttggaaa
aaatcttcaaCTTTTGTTTCAAATTGATCCACTTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012226XLOC_012226Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021787-exon-sc0000394-1491911889:35931..36448TCONS_00021787-exon-sc0000394-1491911889:35931..36448Clytia hemisphaericaexon
TCONS_00021787-exon-sc0000394-1510915933:35931..36448TCONS_00021787-exon-sc0000394-1510915933:35931..36448Clytia hemisphaericaexon
TCONS_00021787-exon-sc0000394-1575043694:35931..36448TCONS_00021787-exon-sc0000394-1575043694:35931..36448Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021787-proteinTCONS_00021787-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:35931..36448 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.147612	0	0	0.119843	0	0.076466	0	0	0	0.13993	0	0.088343	0	0	0	0	0	0.119684	0.369814	0.110017	0	0	0	0.259673
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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