TCONS_00021771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021771
Unique NameTCONS_00021771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021771 ID=TCONS_00021771|Name=TCONS_00021771|organism=Clytia hemisphaerica|type=transcript|length=723bp
AGGCATTGGGGAACAGCGTTGGGATCATTTCAGGGTTTGATGATGATGGG
GATGTCGTTGTCTCTTATCCTAGTGGTAATCGGTGGACGTTCAATCCGGC
AGTGTTGAGCAAAGTCAACGACTTACCAAGTTTGGATTCCGACTCCCTGG
TTGTCCAATCTCTCGCTTCAATGTCGTTGGATGAAGCGGAAGACGGGCAA
CGTCCTTCAAGGGGATCGCGCACCGGTCCTTTCGTGGAAGGAGATGTTGT
CCAAATCTTGAACAATCGTGACCGTGTCAAATTATTACAAGAAGGACACG
GTGAATGGACTGATGCTATGAATGAGACACTTGGCAAGATTGGTTCAGTG
ACGCAAGTGTATCAAGATGGCGATTTGAAGGTGGAAGTCAATGGCACCAG
TTGGACGTTCAATCGGAAATGTGTTGTTCGTATCGGATCACATCGTCAAC
TACACTCTGACGAAGCGAAGTCGCTATTGAAGAAGTTGTTTGAAGGTCAT
TCATCGAAAGAACCTTCAGAACTCTTGGTAAAAGCTGCAGCTGAAGGAAA
CTTGAAACAAATCAACGAACTCTTCNCTGGTGAAAGCTGCAGCTGAAGGA
AACTTGAAACAAATCAACGAACTCTTCAAGACAAGAGCTGCTAAGGTGGA
CGAAGTTTTTGCAGGGCACACGGCATTGCAAGCAGCTTGTCAGAATGGAC
AGGTAGAAGCGATCAAGTTGTTG
Run BLAST on NCBI

transcript from alignment at sc0000394:288781..290296+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021771 ID=TCONS_00021771|Name=TCONS_00021771|organism=Clytia hemisphaerica|type=transcript|length=1516bp|location=Sequence derived from alignment at sc0000394:288781..290296+ (Clytia hemisphaerica)
AGGCATTGGGGAACAGCGTTGGGATCATTTCAGGGTTTGATGATGATGGG
GATGTCGTTGTCTCTTATCCTAGTGGTAATCGGTGAGTTCTTTGTCTTTT
AAGACTAATCTTTTAGTCATGTCATCTTTTACGTTCAAACTTGCGAGGGC
TGTGTGTAGTCGTTGAGTGATCTTTTTGTCTTTTATTGTCGTTGACCTCA
TCCGTCTGAAACCTAATAATAATTTGTGTTGAAAGAAATTCTTcgatttt
gaaagtttcattctaCTCCATTAGGTGGACGTTCAATCCGGCAGTGTTGA
GCAAAGTCAACGACTTACCAAGTTTGGATTCCGACTCCCTGGTTGTCCAA
TCTCTCGCTTCAATGTCGTTGGATGAAGCGGAAGACGGGCAACGTCCTTC
AAGGGGATCGCGCACCGGTCCTTTCGTGGAAGGAGATGTTGTCCAAATCT
TGAACAATCGTGACCGTGTCAAATTATTACAAGAAGGACACGGTGAATGG
ACTGATGCTATGAATGAGGTGATCTTCCTCTTCTTACTCCTCCTCAAATT
CCAAATTCCGGACACTGTCTAGATATAACAAAATGATCCCTTGAGGTCGT
TTCTACCCTATTGACAAGTattgaaaaccaaaattatTTTCTCATAGATA
GAAAGTTATTTGTGTGAAGGGACACGGGGCCGAAACTTCAGCAGGGATTC
AACAATTTTTTCCCTCTCTAAGTAATCGTCCAATTTTCACCACAGACACT
TGGCAAGATTGGTTCAGTGACGCAAGTGTATCAAGATGGCGATTTGAAGG
TGGAAGTCAATGGCACCAGTTGGACGTTCAATCGGAAATGTGTTGTTCGT
ATCGGATCACATCGTCAACTACACTCTGGTACGCTGCGTTTCAATCATTC
TGTACAAatcatttctttgaaaaaattaccaGCTCTCCCTCGTTGAAGTA
ATTTACAAAggtttatttttgaataacctTAGCACGACTTGTATATCTTT
TCTTTCAGACGAAGCGAAGTCGCTATTGAAGAAGTTGTTTGAAGGTCATT
CATCGAAAGAACCTTCAGAACTCTTGGTAAAAGCTGCAGCTGAAGGAAAC
TTGAAACAAATCAACGAACTCTTCNCTGGTGAAAGCTGCAGCTGAAGGAA
ACTTGAAACAAATCAACGAACTCTTCAAGACAAGAGCTGCTAAGGTGGGT
GATGAACTCTTGGCAAGTTTTTCAGTAGTTTTTCTACGcaataaaatagt
ttttttacAGAGAATAGGTGGGAAAATGTTCGATTACTGTTGAACATGAG
CTAAAACATATTCAGAAATTTAATGATGAGGGAGCATAATGTTGTTGAGA
TGGAAACAATATAGGAATGAACAAGTGAATTATCAGCTGATAGATTGGCC
TTAATGTTTAAAAAACTGTTATTTATTCAATGGTGCAGGTGGACGAAGTT
TTTGCAGGGCACACGGCATTGCAAGCAGCTTGTCAGAATGGACAGGTAGA
AGCGATCAAGTTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012215XLOC_012215Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021771-exon-sc0000394-1491911889:288781..288862TCONS_00021771-exon-sc0000394-1491911889:288781..288862Clytia hemisphaericaexon
TCONS_00021771-exon-sc0000394-1510915933:288781..288862TCONS_00021771-exon-sc0000394-1510915933:288781..288862Clytia hemisphaericaexon
TCONS_00021771-exon-sc0000394-1575043694:288781..288862TCONS_00021771-exon-sc0000394-1575043694:288781..288862Clytia hemisphaericaexon
TCONS_00021771-exon-sc0000394-1491911889:289055..289298TCONS_00021771-exon-sc0000394-1491911889:289055..289298Clytia hemisphaericaexon
TCONS_00021771-exon-sc0000394-1510915933:289055..289298TCONS_00021771-exon-sc0000394-1510915933:289055..289298Clytia hemisphaericaexon
TCONS_00021771-exon-sc0000394-1575043694:289055..289298TCONS_00021771-exon-sc0000394-1575043694:289055..289298Clytia hemisphaericaexon
TCONS_00021771-exon-sc0000394-1491911889:289526..289658TCONS_00021771-exon-sc0000394-1491911889:289526..289658Clytia hemisphaericaexon
TCONS_00021771-exon-sc0000394-1510915933:289526..289658TCONS_00021771-exon-sc0000394-1510915933:289526..289658Clytia hemisphaericaexon
TCONS_00021771-exon-sc0000394-1575043694:289526..289658TCONS_00021771-exon-sc0000394-1575043694:289526..289658Clytia hemisphaericaexon
TCONS_00021771-exon-sc0000394-1491911889:289789..289974TCONS_00021771-exon-sc0000394-1491911889:289789..289974Clytia hemisphaericaexon
TCONS_00021771-exon-sc0000394-1510915933:289789..289974TCONS_00021771-exon-sc0000394-1510915933:289789..289974Clytia hemisphaericaexon
TCONS_00021771-exon-sc0000394-1575043694:289789..289974TCONS_00021771-exon-sc0000394-1575043694:289789..289974Clytia hemisphaericaexon
TCONS_00021771-exon-sc0000394-1491911889:290219..290296TCONS_00021771-exon-sc0000394-1491911889:290219..290296Clytia hemisphaericaexon
TCONS_00021771-exon-sc0000394-1510915933:290219..290296TCONS_00021771-exon-sc0000394-1510915933:290219..290296Clytia hemisphaericaexon
TCONS_00021771-exon-sc0000394-1575043694:290219..290296TCONS_00021771-exon-sc0000394-1575043694:290219..290296Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:288781..290296 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.02726	4.09032e-08	7.33111e-08	2.59073	0.0298152	1.63667	0.00999322	7.9436	6.43752	5.90358	6.56022	2.21127e-05	0.00193496	3.7573	7.19514	3.27273	9.05711	5.36825	8.30298	0	0	1.86107	0	0.0825428	6.44741	5.42661	1.23584	0	3.3901	2.76891e-07
Blast
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BLAST of TCONS_00021771 vs. Swiss-Prot (Human)
Match: MIB1 (E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.716e-35
Identity = 76/174 (43.68%), Postives = 102/174 (58.62%), Query Frame = 3 
Query:   66 YPSGNRWTFNPAVLSKXXXXXXXXXXXXXXXXXASMSLDEAEDGQRPSRGSRTGPFVEGDVVQILNNRDRVKLLQEGHGEWTDAMNETLGKIGSVTQVYQDGDLKVEVNGTSWTFNRKCVVRIGSHRQLHSDEA----KSLLKKLFEGHSSKEPSELLVKAAAEGNLKQINELF 575
            YPSGNRWTFNPAVL+K                    ++  + D  + + G  T  F  GD+VQ+  + +R+KLLQ GHGEW +AM  TLGK+G V Q+Y D DLKVEV GTSWT+N   V ++ S     S+ +      LLKKLFE   S + +E LVKAAA G++ ++ +L 
Sbjct:  298 YPSGNRWTFNPAVLTKA-------------------NIVRSGDAAQGAEGG-TSQFQVGDLVQVCYDLERIKLLQRGHGEWAEAMLPTLGKVGRVQQIYSDSDLKVEVCGTSWTYNPAAVSKVASAGSAISNASGERLSQLLKKLFETQESGDLNEELVKAAANGDVAKVEDLL 451
The following BLAST results are available for this feature:
BLAST of TCONS_00021771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MIB13.716e-3543.68E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens G... [more]
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