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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021730 ID=TCONS_00021730|Name=TCONS_00021730|organism=Clytia hemisphaerica|type=transcript|length=1827bp
CAGAAACTTCTTCAGTACCTAGTTAGATCTCAACAATATGCCACCAAAAC
CACCGCCATATGTCATGTGTTATTTATGTGGAAGAAAATATGGCACCAAA
TCGATTGTCATTCATGAGCCAAGCTGTATTAAAAAGTGgcatgctgaaaa
taagaaattaccCAAACATTTGAGACGTAAAATGCCAACGAAACCTGATT
ACAGTAAATTAGCAAGTGGTGATTACGATGGCAATTATGTTGATCAAATG
AATGATGCAGCTTATAAAGCGGCACAAGAACAATTGATTCCTTGTGGGAA
TTGTGGTAGAACTTTTTTACCGGAACGGTTACAAGTTCATCAGAAGTCTT
GCACTGTTGACAATCCAATGAAAAGTAGGACAGGAGGAAAACCAGCTTCA
AGTAGTTCATCCAATCCTGAAATCAATAACAACAGGCCGACAACTAGTGA
TGGGAATAGTGTTAATCCAACACAATCAAATACACCATCAAAGATAAttc
ataaaaacaaactttgttGTTTGTGTATGAAAAAGATTCCAACATCTATT
CTTCCAAATCATTTGGTAAAATGTAATGACTCTAAAATAGTAGAATTGAA
AAACTCTGATGATTTATCAGAACCATCACCTTCGTCAAGTGTAGAACGTA
AAAATActtttaacaaaggaaaaatcgCTCAGAAACCAAAAGCATCAAGC
TCGACATCCTCGCAGGAAAGTGTCAACCAATCAACATACGATCTAGATGA
TTCACAGTCCGTAGAAAGGCCGTCAACCAGAACATTAAAACGAAGAACAC
CATCTAATAACACACAAGGGACTTACGATGTCGATTCTCCAGACGAGGAT
CCTGTTCCTCCAAAACCAAAACCTAGCAAAACAAATAAACCAAAGAAATC
TCCAATCAACCAAGCACCATCATCCAACAATGATTTTGCAGACCAGGTAG
ATCAACAACAAGGTGACGTTTCGTTAACACCGTGCCATCTTTGTAATCGA
AAGTTTGCTTCAGATCGTATCGATAAACATATGGTTATATGCCAGAAAAC
GAGTTCCAAAAACCGTAAAGTATTTGATTCATCAAAACAACGTTCTGTTG
GAAGTGATGCTAACCCGCTCAAAAAGTCTAGTAGTTCTTCGTCAGCACCG
AAGAAAGGTGGTGGTAACTGGCGTCAAACGCATGAGGACTTTATTCGTTC
AATTCGTGCAGCTAAACAAGTTACCAAACACATGGCAAGTGGTGGTAAAG
CATCAGATCTACCTCCGCCACCACCATCCTTGAATCCTAATTACGTCCAT
TGCCAGTACTGTGATCGTAGATTCAACCCTGAAGTTGCTGAACGACATAT
TCCTAAATGTGCTACTACACAGAATCGACCAAAACCACCAAAACAGAAAG
CATTAGACGTCTATAATAAAAAACCACAACCCAAAACAACATCTAAACCA
GTCAGCTCAGCTAGAAAGAAACCATCCAACCAAAAAGTAGGCTCCAACAA
TAACCTGTTACGACAATCATCAAGTGGGGGTTATAACAGTCCAACTATTG
ACCGAGGATATCAAAATTACGACACGCCCTCTTCCAGTAAACAAAGTTTT
AGCAGGAGCAGTCCAAGGCAACAAGGAAATGATCCTTACAAGGCAAAAAC
TTTCAATGGCATCAACAACAGGACTCCTGCTGCGAATAGAGGGTTTACAT
ACAACGCAATGAATCATACGGGACCAAATTTCTTTGGTTAAGAAGTGTAA
CTCGAAGATTTCCTCAACAAAACTCTTAatatttttccctaaaaatgggc
tcttccagaaaattgttttaaattggG Run BLAST on NCBI transcript from alignment at sc0000393:230794..234647- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021730 ID=TCONS_00021730|Name=TCONS_00021730|organism=Clytia hemisphaerica|type=transcript|length=3854bp|location=Sequence derived from alignment at sc0000393:230794..234647- (Clytia hemisphaerica)
CAGAAACTTCTTCAGTACCTAGTTAGTAGGTGTTTTTTCTTGTATTTTTC
TTTATATATATTCAATGATTGAGACATGTATCACGGTACGATGTAATGAT
TTTGAGAGCTTGAAAATAAAATTCTGAGCGTGACCCAAATTCCCGACGGC
ACAAGACAAGCTGACCCATGCACGTTCGGGGCGTTTGGAAAACGATCTGA
AACGATATCATAATAATATAATAATAATAATAATAATAATAACATATATT
TTAAGTGGCATGCTCCAAAAAATTCTAAAGCTTTTAGTGTTTAGGCAGCT
GAAGAATTGTTTCCACAAAGGGCCACTATGAACAGAACAAGAACTGGGAA
AATCGAACAAGACAGAAAGACTTAAATTTAATTATCTAACAAAAAAAGTA
CTCCAGGATGCAAGTGAAATTTTTCTATCTGTGGACCTAGACGGGGTTCA
GTTATAATCAGTTAGTAGGGTTAGGGTTGGAGCTTAAGAGTCACACTAGG
GTATTCGTGCCCCCCTAGGCTAGACTTAACTTAGGATCCCAGGGATCCTT
GTAGGGTTGGGAGCTTTGTTAATTAAGGTCCTGTAAATTACACGCTATAG
GTATTTGTGAATGACAGCATTCTGCAGTGTCTTGTTGGCGCAATCAGGTA
GGCATTGGATTTGTAAACCAAGATTGCTTGCATTTGGGGGTTCGAGCTGA
GGTGGGAGACTATCTATTTCACCAGTATGGGCCTGTATGGGCAAGTTTCA
GAAAAATACTTAGAAAGCAGTTAGAAACACTTGAAAAAGTTAGAAAATCA
GAATAGAAAATAGGATCAAAGTCGAAATTAGGAGGGAAATAAGAGAGGAT
GCATCCTGGAGTATGATATCGTTTTCCGATCGTTTGGGGCATGTTCAAGC
CAGGTTTTAGAGGGAAAATCTAAGACTTTTTTGCTCAAACTTGGTTCAAG
CATTGATTTTTTGACAAAAAAATGTTTTGCTATTTCAGCTAGCCTGTAAC
ATGACCCAAAAATGTTCAGGTATATCTATTCAAGCCATACTAATTGTGGG
TTGTCACCTGAAATCTTAAGCTACTGCCTTCTTTAAAAAATGGATATACT
GTAGAAGATGGTTTGAAATATTTTACAATGAATTTCCACCATGTAACTGA
ACAAAGCATAGCAAAACCTCAATCAAAATATCTATTTCTCCAGATCTCTT
TTCTATCTCTGTTTATATCTCTATCTATTTTATTTTGACTTTTAGTAAGA
AAATAAAGAATTTCAAAAACTTAAGAACCGTGTCAAGAACCCCTTTTTAG
TAATTTCAAATTGTGATTTCTCAACTTTTGGAAAAAAGTTAGAAAAAAAT
CAAAGGTTTTACCCCCCCCACCCCGCAGAAGGTTTTTGCAAGCTAAATAT
ATCAAACCATCTGATTATCCCTTCGAGTCTGCATTGCAATGGCTACGGTC
TAATAATAACAATAAAATAATAAATTATCTAGCCTTAATTTCAGCTTATA
GAAGAGCTTGTCAGAGTCAAAAATACTTCTGACACATTTATCTTTGTGTC
AAAAATTTAATTAGAATAAAAATCAGATAGGGGGCTTTAAAGTACCTCCA
TACAAAAAAAGGAAGTTTGTAGCATCAAAATGATAAAGTAAACAATAGCT
TCCACTATTCTTTCACTTTTCATCTCCATTTTATTTGAAATTATTTTTCA
CAAAAATTAGAGTACCAGTATTCTGAATTAACTTGTTAAGAAATGACAAG
CAAAATAAAGATTAGCGCACACTTTACTTTAAAGTGAATGCACTTAAGCA
TAAAACACTTACCCAGCAAGCCAGTATAAAAGGGAATAAATTGATTTTGT
TTAAAATGATGCAATCCACTTAAACTTTTTTTCCAAAATATGTGTTACAG
TGATCATCATCAACCCTTATTAACCCAAAGTTTGGTTTCAACTTATTAAA
GTTCACTTGTTCACTTCACACGGGTCGACCCTTGCTACGTTAGGGGAAAT
GGGTAGACAGTCCAGGGCTGTGTTAACGGCATTATTATCTTTACTTTTTT
AGGATCTCAACAATATGCCACCAAAACCACCGCCATATGTCATGTGTTAT
TTATGTGGAAGAAAATATGGCACCAAATCGATTGTCATTCATGAGCCAAG
CTGTATTAAAAAGTGGCATGCTGAAAATAAGAAATTACCCAAACATTTGA
GACGTAAAATGCCAACGAAACCTGATTACAGTAAATTAGCAAGTGGTGAT
TACGATGGCAATTATGTTGATCAAATGAATGATGCAGCTTATAAAGCGGC
ACAAGAACAATTGATTCCTTGTGGGAATTGTGGTAGAACTTTTTTACCGG
AACGGTTACAAGTTCATCAGAAGTCTTGCACTGTTGACAATCCAATGAAA
AGTAGGACAGGAGGAAAACCAGCTTCAAGTAGTTCATCCAATCCTGAAAT
CAATAACAACAGGCCGACAACTAGTGATGGGAATAGTGTTAATCCAACAC
AATCAAATACACCATCAAAGATAATTCATAAAAACAAACTTTGTTGTTTG
TGTATGAAAAAGATTCCAACATCTATTCTTCCAAATCATTTGGTAAAATG
TAATGACTCTAAAATAGTAGAATTGAAAAACTCTGATGATTTATCAGAAC
CATCACCTTCGTCAAGTGTAGAACGTAAAAATACTTTTAACAAAGGAAAA
ATCGCTCAGAAACCAAAAGCATCAAGCTCGACATCCTCGCAGGAAAGTGT
CAACCAATCAACATACGATCTAGATGATTCACAGTCCGTAGAAAGGCCGT
CAACCAGAACATTAAAACGAAGAACACCATCTAATAACACACAAGGGACT
TACGATGTCGATTCTCCAGACGAGGATCCTGTTCCTCCAAAACCAAAACC
TAGCAAAACAAATAAACCAAAGAAATCTCCAATCAACCAAGCACCATCAT
CCAACAATGATTTTGCAGACCAGGTAGATCAACAACAAGGTGACGTTTCG
TTAACACCGTGCCATCTTTGTAATCGAAAGTTTGCTTCAGATCGTATCGA
TAAACATATGGTTATATGCCAGAAAACGAGTTCCAAAAACCGTAAAGTAT
TTGATTCATCAAAACAACGTTCTGTTGGAAGTGATGCTAACCCGCTCAAA
AAGTCTAGTAGTTCTTCGTCAGCACCGAAGAAAGGTGGTGGTAACTGGCG
TCAAACGCATGAGGACTTTATTCGTTCAATTCGTGCAGCTAAACAAGTTA
CCAAACACATGGCAAGTGGTGGTAAAGCATCAGATCTACCTCCGCCACCA
CCATCCTTGAATCCTAATTACGTCCATTGCCAGTACTGTGATCGTAGATT
CAACCCTGAAGTTGCTGAACGACATATTCCTAAATGTGCTACTACACAGA
ATCGACCAAAACCACCAAAACAGAAAGCATTAGACGTCTATAATAAAAAA
CCACAACCCAAAACAACATCTAAACCAGTCAGCTCAGCTAGAAAGAAACC
ATCCAACCAAAAAGTAGGCTCCAACAATAACCTGTTACGACAATCATCAA
GTGGGGGTTATAACAGTCCAACTATTGACCGAGGATATCAAAATTACGAC
ACGCCCTCTTCCAGTAAACAAAGTTTTAGCAGGAGCAGTCCAAGGCAACA
AGGAAATGATCCTTACAAGGCAAAAACTTTCAATGGCATCAACAACAGGA
CTCCTGCTGCGAATAGAGGGTTTACATACAACGCAATGAATCATACGGGA
CCAAATTTCTTTGGTTAAGAAGTGTAACTCGAAGATTTCCTCAACAAAAC
TCTTAATATTTTTCCCTAAAAATGGGCTCTTCCAGAAAATTGTTTTAAAT
TGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021730-exon-sc0000393-1575043694:234623..234647 | TCONS_00021730-exon-sc0000393-1575043694:234623..234647 | Clytia hemisphaerica | exon |
| TCONS_00021730-exon-sc0000393-1575043694:230794..232595 | TCONS_00021730-exon-sc0000393-1575043694:230794..232595 | Clytia hemisphaerica | exon |
| TCONS_00021730-exon-sc0000393-1510915933:234623..234647 | TCONS_00021730-exon-sc0000393-1510915933:234623..234647 | Clytia hemisphaerica | exon |
| TCONS_00021730-exon-sc0000393-1510915933:230794..232595 | TCONS_00021730-exon-sc0000393-1510915933:230794..232595 | Clytia hemisphaerica | exon |
| TCONS_00021730-exon-sc0000393-1491911889:234623..234647 | TCONS_00021730-exon-sc0000393-1491911889:234623..234647 | Clytia hemisphaerica | exon |
| TCONS_00021730-exon-sc0000393-1491911889:230794..232595 | TCONS_00021730-exon-sc0000393-1491911889:230794..232595 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000393 | supercontig | sc0000393:230794..234647 - |
Blast
BLAST of TCONS_00021730 vs. Swiss-Prot (Human)
Match: ZN474 (Zinc finger protein 474 OS=Homo sapiens GN=ZNF474 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.573e-31 Identity = 74/194 (38.14%), Postives = 104/194 (53.61%), Query Frame = 2
Query: 38 MPPKPPPYVMCYLCGRKYGTKSIVIHEPSCIKKWHAENKKLPKHLRRKMPTKPDYSKLASGDYDGNYVDQMNDAAYKAAQEQLIPCGNCGRTFLPERLQVHQKSCTVDNPMKSRTGGKPAXXXXXNPEINNNRPTTSDGNSVNPTQSNTPSKIIHKNKLCCLCMKKIPTSILPNHLVKC-------NDSKIVEL 598
+P + P + +CY+CGR++G++SI IHEP C++KWH EN KLPKHLRR P+KP + N+AA+++AQ QL+PC +CGRTFLP+ L VH +SC KP P N++ T + S TP++ + +C +C K+ T LP H KC ND VEL
Sbjct: 87 IPARRPGFRVCYICGREFGSQSIAIHEPQCLQKWHIENSKLPKHLRRPEPSKPQSLSSSGSYSL----QATNEAAFQSAQAQLLPCESCGRTFLPDHLLVHHRSC------------KPKGEGPRAPHSNSSDHLTGLKKAC----SGTPARP--RTVICYICGKEFGTLSLPIHEPKCLEKWKMENDRLPVEL 258
The following BLAST results are available for this feature:
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