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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021692 ID=TCONS_00021692|Name=TCONS_00021692|organism=Clytia hemisphaerica|type=transcript|length=1113bp
GTTTGAATTTAATGATGGCTGACACTTGTATCATCTATGACAGTGACTGG
AATCCTCAAGTTGATTTACAAGCGCAAGATCGTTGTCACAGGATTGGGCA
AACGAGACCAGTGATCATTTATCGGTTCGTGACAGCCAACACAATCGATC
AACGGATTATTGAACGAGCTTCGAGTAAAAGAAAATTGGAGAAAATGATC
ATACACAAAAAAAATTTCAAAGGTCAAAGTGCAACTGCAATTTCACCATC
AGAACTATTAGATCTGTTGAAATCCAATGATTTTTCGTCCTCTGTTGACA
CCGGTGGTCACGTGTTCACCGACGAACAGCTTGATAGACTTCTTGATCGA
TCTGATATGATGCCAGGCTCGTCGTCTCCAGATGATGTTGGTGATCAAAA
GAAAGCTAATGTTTCACATGAAAATGACGAGAATAATAATAACGATATCA
GTggtaatcaaaatttcaaagttattgATATTACGCACGGGGAGAAAGTC
GAGTTTTGATAATAGTGACTTATATGGCGTTCTGGAATGTATTCAAAGTT
GCATACAGGTATTAGTACATTGGATGTTTATTGCAATCTTGGAATTAAAT
GTTTCATGGCAAGTTTAATATCCCTTTGCAAATTGGATTTACGAGACATC
AAACTTGCAATCATGTTTGACGCAAGTAGCTTGAATTTCACATGGAATTG
AACCTGTTATGTGTTATGTACGCGAACTGTAGTTTGATTGGCATTTGAAG
GTGAAATGCGACATGTGAGTTTAGTTAATATTTTCGATAATTTTGACCAT
CTGACTAATTTGCTGATCAAGCATTTTATTCCTTGGTCAGCAATTTAATT
TAATGGCCTTCAATTACACAATGTACATGACTTGTTTTGGTTGAACATTT
TAACTTTAAAAGAGAAACCCGAGTCGAGTTATAGAGTTTATGAATGTTAA
AGATTTTTCGATAAATTAGGCTTTTATTACCTTCCCTTGCCACAGCATTG
TAAAATTTAACACCGCCCTTTCCCGCCAATGGACCATTCTCTTCGTAATT
TTACCACACCCTCCCGTAACCCTAACTTCCCCTATTCTAAGcttattaaa
aatatttctcaac Run BLAST on NCBI transcript from alignment at sc0000393:82393..86259+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021692 ID=TCONS_00021692|Name=TCONS_00021692|organism=Clytia hemisphaerica|type=transcript|length=3867bp|location=Sequence derived from alignment at sc0000393:82393..86259+ (Clytia hemisphaerica)
GTTTGAATTTAATGATGGCTGACACTTGTATCATCTATGACAGTGACTGG
GTGAGTAGATATAAGTAAtgagcactgacctttatatatgcCTGGGCCAA
GTtacatccgccatctttgatcggagttttttttttgaaagtgttacCAG
CTAAGAAGCCATATTGCAGTGCTAAAAATTAACGTTAAACGGTGCTAAAT
CATAAAAAGTAtgcgaggaaaagtagacctagcgcctTCGAAGcttttac
accgctattgagtagtgctaccattaacCATTAGCGTGTACCAAAAAAAC
ctcaaacaaagattttactTGACCGGGACTGAGAAACTtcgtccagggta
tataaaggtcagtggcaaTAAGCGTCAGGCACAGTTTTTATTACCTTTTT
TTGCTTCAAAGCNCATGAATTGGgtgaaagaaaaacagaaaagttgcata
atttcgtgaagtcattgcagtggtgcatataaTGAATACAATCTAAATCT
TACCAAACACTAATTTCaggttttgattttctcacaaATGACAACAATGT
TGGATATCATAGGTGATTATTGTGGAATTCGTGGTTATAAATACTCCANT
AAATGGGTATTCTTCgccacggcatgacgtcagaactggggTACGACAGA
ACAAttactaaagattaattatgtgttttcagtaaacataatcCTTTGTG
AGTTAAtccatagtgtttgttttaccctcgaaattattaaatcttattgg
ttgaaaaagatgtcacatgactttccgtTGCAAAGAATATAATGGCACCA
AGACCTTACTaaccatttttggacctaccccggtggaggtcctataaatt
cacctctgtccgttcgttcgttaccagcttttctcgagattggctcatta
gttttttctggttttttgcacaaagatgtgtaactataaattctcgaatg
tgacggagcccgattttcaaaaaaaaaaatttgggggcaaatttgggcca
aaaaacggctaaaaaacgggttttttggactttgNcgacaaaaatactca
aaattggcgaaaataagaacatgttaagaacattcttaggctTACAACTC
AAAAAAgtctaaggcttcaaaaaattttgatgttcttatcaaaaaaagtg
taattaGCTTTAATCCACCTTTGCAAGCGCTTGACACGTAGGCTTTCTTT
ACTTTACCCtacttttttttctcatttccacCCACAGATTGAAGATTTTG
CAGCTGATGAAGaaacctttttgtttttgttgagtACACGTGCTGGAGGT
CTGGGNtttttttgcatgaaagtagggtaccatcataggtaaaagatggc
tcaagctgatttttgcaaaaaaaatttttgttggctcaaaaaacgcatgt
ttatctataagagtcactattaataagcatacatcaatgttcttagtcaa
attactcaatttttttatgagatggatgttttttttgctcatgggggctt
acttttgaagaatatgtgtgtttagacatgaaattttggttacttggcgt
gtttttatagagaaACTGGCAACATTCGATANGTGAGTAGATATAAGTAA
tgagcactgacctttatatatccctgggcCAAGTtacatccgccatcttt
gatcggagtttttttttgaaagtgttacCAGCTAAGAAGCCATATTGCAG
TGCTAAAAATTAACGTTAAACGGTGCTAAATCATAAAAAGTAtgcgagga
aaagtagacctagcgcctTCGAAGCTTTTACANtgattttttgcacaaag
atgcataactataaaccctcgaatgtgacggagcccgatattcgaaaaaa
atgtttttgggcaaatttgggccaaaaaacggctaaaaaacgactttgtg
aaatattggattattgttgttttttttcagacttttttcataaaagtagg
taaaagatggctcaagcagatttttgtaaaaaaaaatttgttggctcaaa
aaacttatgtttatctataagaatcactattaataagcatacatcatgtt
cttagtcaaattactaaattttttgatgaaatagatgttttttttgctca
cgaagtcttgaatatgaaagaatcaTTTTAAAATGTGTTCCATTGATTGt
tctttaattatttttaaataaaggaATTCGGAACATTTTCTCCTGCATCC
ATGTAGCAATTTTGCTCCAAAATATAACGTTGGTCTGTACCTTCCATTTG
ACTTTCTGAATATAATTGACTGTTTGTATTCATTTTTAACAATGTTTATA
TTAATTTTTAATTAGTctgtttgataaccaggtaggtctatCATAAGTAT
CACTTATCCACATTATGAGAAGAATCTTATTAAAGATTTCTCTTTTTAAT
GTCCCTTTTACCCTNTCACATTATGAGAAGAATCTCATTAAAGATTTCTC
TTTTTAATGTCCCTTTTACCctgtgaattttattttttgaagtctTTTTT
GACTaaagattttgacttttttctcaGAATCCTCAAGTTGATTTACAAGC
GCAAGATCGTTGTCACAGGATTGGGCAAACGAGACCAGTGATCATTTATC
GGTTCGTGACAGCCAACACAATCGATCAACGGATTATTGAACGAGCTTCG
AGTAAAAGAAAATTGGAGAAAATGATCATACACAAAAGTAAAAGCAACTA
ATCTTTTTACCCATGATTTTAAACAGTGGATTCTCTTTAACTCGACCCTC
TATAACCCAAATGTCTCCTTAAACTCGGAcgagttttatggtcccttcag
ttaacaattccTTATCAACCTTACTCTATAGCTCGAAATTTCCCCTATGT
TTCTCCTGGATATATTCTTAAACTAGACAACTACTTTAAATATAGTTTAA
GTTTAAGTGCAGAAATTTTAACAAACAAAGGCTCCATAACGATACACTTT
CAATTCATTTCTAGAAAATTTCAAAGGTCAAAGTGCAACTGCAATTTCAC
CATCAGAACTATTAGATCTGTTGAAATCCAATGATTTTTCGTCCTCTGTT
GACACCGGTGGTCACGTGTTCACCGACGAACAGCTTGATAGACTTCTTGA
TCGATCTGATATGATGCCAGGCTCGTCGTCTCCAGATGATGTTGGTGATC
AAAAGAAAGCTAATGTTTCACATGAAAATGACGAGAATAATAATAACGAT
ATCAGTggtaatcaaaatttcaaagttattgATATTACGCACGGGGAGAA
AGTCGAGTTTTGATAATAGTGACTTATATGGCGTTCTGGAATGTATTCAA
AGTTGCATACAGGTATTAGTACATTGGATGTTTATTGCAATCTTGGAATT
AAATGTTTCATGGCAAGTTTAATATCCCTTTGCAAATTGGATTTACGAGA
CATCAAACTTGCAATCATGTTTGACGCAAGTAGCTTGAATTTCACATGGA
ATTGAACCTGTTATGTGTTATGTACGCGAACTGTAGTTTGATTGGCATTT
GAAGGTGAAATGCGACATGTGAGTTTAGTTAATATTTTCGATAATTTTGA
CCATCTGACTAATTTGCTGATCAAGCATTTTATTCCTTGGTCAGCAATTT
AATTTAATGGCCTTCAATTACACAATGTACATGACTTGTTTTGGTTGAAC
ATTTTAACTTTAAAAGAGAAACCCGAGTCGAGTTATAGAGTTTATGAATG
TTAAAGATTTTTCGATAAATTAGGCTTTTATTACCTTCCCTTGCCACAGC
ATTGTAAAATTTAACACCGCCCTTTCCCGCCAATGGACCATTCTCTTCGT
AATTTTACCACACCCTCCCGTAACCCTAACTTCCCCTATTCTAAGcttat
taaaaatatttctcaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021692-exon-sc0000393-1491911889:82393..82442 | TCONS_00021692-exon-sc0000393-1491911889:82393..82442 | Clytia hemisphaerica | exon |
| TCONS_00021692-exon-sc0000393-1510915933:82393..82442 | TCONS_00021692-exon-sc0000393-1510915933:82393..82442 | Clytia hemisphaerica | exon |
| TCONS_00021692-exon-sc0000393-1575043694:82393..82442 | TCONS_00021692-exon-sc0000393-1575043694:82393..82442 | Clytia hemisphaerica | exon |
| TCONS_00021692-exon-sc0000393-1491911889:84920..85079 | TCONS_00021692-exon-sc0000393-1491911889:84920..85079 | Clytia hemisphaerica | exon |
| TCONS_00021692-exon-sc0000393-1510915933:84920..85079 | TCONS_00021692-exon-sc0000393-1510915933:84920..85079 | Clytia hemisphaerica | exon |
| TCONS_00021692-exon-sc0000393-1575043694:84920..85079 | TCONS_00021692-exon-sc0000393-1575043694:84920..85079 | Clytia hemisphaerica | exon |
| TCONS_00021692-exon-sc0000393-1491911889:85357..86259 | TCONS_00021692-exon-sc0000393-1491911889:85357..86259 | Clytia hemisphaerica | exon |
| TCONS_00021692-exon-sc0000393-1510915933:85357..86259 | TCONS_00021692-exon-sc0000393-1510915933:85357..86259 | Clytia hemisphaerica | exon |
| TCONS_00021692-exon-sc0000393-1575043694:85357..86259 | TCONS_00021692-exon-sc0000393-1575043694:85357..86259 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000393 | supercontig | sc0000393:82393..86259 + |
Blast
BLAST of TCONS_00021692 vs. Swiss-Prot (Human)
Match: HELLS (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 3.758e-39 Identity = 74/121 (61.16%), Postives = 93/121 (76.86%), Query Frame = 3
Query: 3 LNLMMADTCIIYDSDWNPQVDLQAQDRCHRIGQTRPVIIYRFVTANTIDQRIIERASSKRKLEKMIIHKKNFK-GQSATAIS-----PSELLDLLKSNDFSSSVD-TGGHVFTDEQLDRLL 344
+NL ADT IIYDSDWNPQ DLQAQDRCHRIGQT+PV++YR VTANTIDQ+I+ERA++KRKLEK+IIHK +FK GQS +S P EL++LLKS D+ + + V +D+ L+ LL
Sbjct: 681 INLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYEREIKGSREKVISDKDLELLL 801
The following BLAST results are available for this feature:
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