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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021663 ID=TCONS_00021663|Name=TCONS_00021663|organism=Clytia hemisphaerica|type=transcript|length=2206bp
CAtagttttaaaattaaataaagaGTAGAATTTGCTCCAGAATTCCTTTC
TCGACTTAAAATCTTCTCACTTTTGATTCTagcatgaaaatctttttttt
ttaaatattacaaAATAAATAATCTTAATTGCAAAtataatttcaagaaa
ataaattGAAGGACAAAACATTTATAtgataataaaatatttcttcagGT
TCCTACGGTCAGCCAAGTTGTCATGTTTTATATTATAATGTACGTATCTT
TTAATTTGAATGCCGTGATCTGTATATGTTTTCACGCTCTATAAGTTTTC
ATACTTTTAGCATTGTCCTCTTTGATAGTCTTATATGAAAACCTACATTA
AAACTTTCGATTTACTTTAAACACCATTATCGGAAATGGGCTCTTCCccg
ctcttccagaaaatttttgtacatgggggaggaggatatattgaatattt
tgtctggcggtagtgaaaaatctgcaaaatttgccttgtttttggggcaa
atttgctctgtttaggggtaattGTGTATGCCCGGGGGGTAAGAtctgtt
gtccggggggtcatAACTCACTATGTCCGGggaataaatttccaaaaacg
TTATATCCTCCGTCCCCCCCCCATAATcaaatttttctggaagagcccaa
tgttcGTCCTTTAAAAGCTTGCCTTTTCAACAAGCCCGTAATTTTCATCA
GCCTCAGAACTGGAGCTAGTGCGACTACCCACAATCCCATTCTGTTTACC
CAAAAGTCGATCCAACACTTGCTTAGGATGGAAAACCCTTCTCCAATTCT
GATTGGTCATTTtgaaaacgatgacgtcatgaatCAATCCTAACGCGATG
AGGAAGGTGACTAAACCGAACAAGAATTGGATAGCGACGTTAGATTCGAA
GACTTCACGTACGGTACCGATATGTATGGTTTCCGTGTGGCAATAACGTT
GATATTTGGTTTGCGTGTAGTCGTAAATTTCTTCACGGTTAGTATGCATG
CAACGGATCACATCAATCAGCTCTTTACTCGGATTGCTATTCATAGCACA
TCGAACGTACAAATGAGCCGGTAGCTTATCGACAATATGCAATGGTGGAT
TCTTACCATCGCTACCGAGAATCTCAGTTTGGTACCACGCAGCGATATCA
GCACTCATCATGGCAGCAAACACTTTCTCTTCACGAACCAAGTTTAAGAC
GTCTTCGTATGAAGCTGCAGGTACTGTGTTAGCTTGGTAATCTCTTGAAG
CAACTTTCTCCTCGTAAGACCCTCTCAACACGGCAACTGACTGTCCATAT
ACCGACAGATTCCCAATCCCCGACACGACATCCGTCATTGTTGCCGTCAT
GACGCATCCCAACATGATACCGACCACTAACCAGAATAATGCGATAAAAC
GACCGACGGGCGATTTTGGTGTGATGTCACCATAACCGACAGTCGTCATG
GATACAACACTCCACCAGAAAGTAGTACCGGTACCAAGGATAAAAGAACG
TTCGATGTCTTGGTTCCAGACCCTTTCAATGAACCAGATAACAATACTGA
AGAAAATGGCTAAGGGGATCACGATAACAAAAATAATCTTACAACTAGCA
ATACCGTTTAGAATCTTGTTCGGTAAGTCAATCATTTTTCTAGGAACGAT
AACCACAATTTCATTGGTTTTCATTAAGGAGAAAGATCGGACTCGATTCG
CACTTTCCCATTCAGATTCGAACTCATTCATGACGGGTACCAGAAACATT
TCACCTTCGTTGATACCTTTAAGGTATCCTTCATCATACTTAAATCCACT
TTCAATGCTATCGATAAACTGTTGACGCGAATCAAATCTTTTGACGAAAT
CGATAACAGTGACATTCGGGTTTCGATTACAAAACGCATTAGCACGTGCA
AAGACTTTAGGTATAATTCCATCAATTTCACCTTTCTCGTTTGTGAAAAT
ATACGGCTTCACCTCCCAGAATACACCTTTCATGAGGGCTCGTTTCTGTT
GAGCACCAGAAGAATTGATCaccaaaaagatcaaaatcaaaGAGATCTTC
ATGACCTccatctttgaaaaatatttagttATTTATCCTATAACATCTGA
CTTCGATTGAAGTGTGTCCTTTTTCAGTAAGTCTACTGGAGtgtttgata
aaaaacaaatgaaggTTCTATGTTAACTAACACCATGACACATGCATTGA
TTGACC Run BLAST on NCBI protein sequence of TCONS_00021663-protein >TCONS_00021663-protein ID=TCONS_00021663-protein|Name=TCONS_00021663-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp
MEVMKISLILIFLVINSSGAQQKRALMKGVFWEVKPYIFTNEKGEIDGII
PKVFARANAFCNRNPNVTVIDFVKRFDSRQQFIDSIESGFKYDEGYLKGI
NEGEMFLVPVMNEFESEWESANRVRSFSLMKTNEIVVIVPRKMIDLPNKI
LNGIASCKIIFVIVIPLAIFFSIVIWFIERVWNQDIERSFILGTGTTFWW
SVVSMTTVGYGDITPKSPVGRFIALFWLVVGIMLGCVMTATMTDVVSGIG
NLSVYGQSVAVLRGSYEEKVASRDYQANTVPAASYEDVLNLVREEKVFAA
MMSADIAAWYQTEILGSDGKNPPLHIVDKLPAHLYVRCAMNSNPSKELID
VIRCMHTNREEIYDYTQTKYQRYCHTETIHIGTVREVFESNVAIQFLFGL
VTFLIALGLIHDVIVFKMTNQNWRRVFHPKQVLDRLLGKQNGIVGSRTSS
SSEADENYGLVEKASF Run BLAST on NCBI transcript from alignment at sc0000391:134149..136354 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021663 ID=TCONS_00021663|Name=TCONS_00021663|organism=Clytia hemisphaerica|type=transcript|length=2206bp|location=Sequence derived from alignment at sc0000391:134149..136354 (Clytia hemisphaerica)
GGTCAATCAATGCATGTGTCATGGTGTTAGTTAACATAGAAccttcattt
gttttttatcaaacaCTCCAGTAGACTTACTGAAAAAGGACACACTTCAA
TCGAAGTCAGATGTTATAGGATAAATaactaaatatttttcaaagatggA
GGTCATGAAGATCTCtttgattttgatctttttggtGATCAATTCTTCTG
GTGCTCAACAGAAACGAGCCCTCATGAAAGGTGTATTCTGGGAGGTGAAG
CCGTATATTTTCACAAACGAGAAAGGTGAAATTGATGGAATTATACCTAA
AGTCTTTGCACGTGCTAATGCGTTTTGTAATCGAAACCCGAATGTCACTG
TTATCGATTTCGTCAAAAGATTTGATTCGCGTCAACAGTTTATCGATAGC
ATTGAAAGTGGATTTAAGTATGATGAAGGATACCTTAAAGGTATCAACGA
AGGTGAAATGTTTCTGGTACCCGTCATGAATGAGTTCGAATCTGAATGGG
AAAGTGCGAATCGAGTCCGATCTTTCTCCTTAATGAAAACCAATGAAATT
GTGGTTATCGTTCCTAGAAAAATGATTGACTTACCGAACAAGATTCTAAA
CGGTATTGCTAGTTGTAAGATTATTTTTGTTATCGTGATCCCCTTAGCCA
TTTTCTTCAGTATTGTTATCTGGTTCATTGAAAGGGTCTGGAACCAAGAC
ATCGAACGTTCTTTTATCCTTGGTACCGGTACTACTTTCTGGTGGAGTGT
TGTATCCATGACGACTGTCGGTTATGGTGACATCACACCAAAATCGCCCG
TCGGTCGTTTTATCGCATTATTCTGGTTAGTGGTCGGTATCATGTTGGGA
TGCGTCATGACGGCAACAATGACGGATGTCGTGTCGGGGATTGGGAATCT
GTCGGTATATGGACAGTCAGTTGCCGTGTTGAGAGGGTCTTACGAGGAGA
AAGTTGCTTCAAGAGATTACCAAGCTAACACAGTACCTGCAGCTTCATAC
GAAGACGTCTTAAACTTGGTTCGTGAAGAGAAAGTGTTTGCTGCCATGAT
GAGTGCTGATATCGCTGCGTGGTACCAAACTGAGATTCTCGGTAGCGATG
GTAAGAATCCACCATTGCATATTGTCGATAAGCTACCGGCTCATTTGTAC
GTTCGATGTGCTATGAATAGCAATCCGAGTAAAGAGCTGATTGATGTGAT
CCGTTGCATGCATACTAACCGTGAAGAAATTTACGACTACACGCAAACCA
AATATCAACGTTATTGCCACACGGAAACCATACATATCGGTACCGTACGT
GAAGTCTTCGAATCTAACGTCGCTATCCAATTCTTGTTCGGTTTAGTCAC
CTTCCTCATCGCGTTAGGATTGattcatgacgtcatcgttttcaAAATGA
CCAATCAGAATTGGAGAAGGGTTTTCCATCCTAAGCAAGTGTTGGATCGA
CTTTTGGGTAAACAGAATGGGATTGTGGGTAGTCGCACTAGCTCCAGTTC
TGAGGCTGATGAAAATTACGGGCTTGTTGAAAAGGCAAGCTTTTAAAGGA
CgaacattgggctcttccagaaaaatttgATTATGGGGGGGGGACGGAGG
ATATAAcgtttttggaaatttattccCCGGACATAGTGAGTTatgacccc
ccggacaacagaTCTTACCCCCCGGGCATACACaattacccctaaacaga
gcaaatttgccccaaaaacaaggcaaattttgcagatttttcactaccgc
cagacaaaatattcaatatatcctcctcccccatgtacaaaaattttctg
gaagagcggGGAAGAGCCCATTTCCGATAATGGTGTTTAAAGTAAATCGA
AAGTTTTAATGTAGGTTTTCATATAAGACTATCAAAGAGGACAATGCTAA
AAGTATGAAAACTTATAGAGCGTGAAAACATATACAGATCACGGCATTCA
AATTAAAAGATACGTACATTATAATATAAAACATGACAACTTGGCTGACC
GTAGGAACctgaagaaatattttattatcaTATAAATGTTTTGTCCTTCa
atttattttcttgaaattataTTTGCAATTAAGATTATTTATTttgtaat
atttaaaaaaaaaagattttcatgctAGAATCAAAAGTGAGAAGATTTTA
AGTCGAGAAAGGAATTCTGGAGCAAATTCTACtctttatttaattttaaa
actaTG Coding sequence (CDS) from alignment at sc0000391:134149..136354 >TCONS_00021663 ID=TCONS_00021663|Name=TCONS_00021663|organism=Clytia hemisphaerica|type=CDS|length=1401bp|location=Sequence derived from alignment at sc0000391:134149..136354 (Clytia hemisphaerica)
atggAGGTCATGAAGATCTCtttgattttgatctttttggtGATCAATTC
TTCTGGTGCTCAACAGAAACGAGCCCTCATGAAAGGTGTATTCTGGGAGG
TGAAGCCGTATATTTTCACAAACGAGAAAGGTGAAATTGATGGAATTATA
CCTAAAGTCTTTGCACGTGCTAATGCGTTTTGTAATCGAAACCCGAATGT
CACTGTTATCGATTTCGTCAAAAGATTTGATTCGCGTCAACAGTTTATCG
ATAGCATTGAAAGTGGATTTAAGTATGATGAAGGATACCTTAAAGGTATC
AACGAAGGTGAAATGTTTCTGGTACCCGTCATGAATGAGTTCGAATCTGA
ATGGGAAAGTGCGAATCGAGTCCGATCTTTCTCCTTAATGAAAACCAATG
AAATTGTGGTTATCGTTCCTAGAAAAATGATTGACTTACCGAACAAGATT
CTAAACGGTATTGCTAGTTGTAAGATTATTTTTGTTATCGTGATCCCCTT
AGCCATTTTCTTCAGTATTGTTATCTGGTTCATTGAAAGGGTCTGGAACC
AAGACATCGAACGTTCTTTTATCCTTGGTACCGGTACTACTTTCTGGTGG
AGTGTTGTATCCATGACGACTGTCGGTTATGGTGACATCACACCAAAATC
GCCCGTCGGTCGTTTTATCGCATTATTCTGGTTAGTGGTCGGTATCATGT
TGGGATGCGTCATGACGGCAACAATGACGGATGTCGTGTCGGGGATTGGG
AATCTGTCGGTATATGGACAGTCAGTTGCCGTGTTGAGAGGGTCTTACGA
GGAGAAAGTTGCTTCAAGAGATTACCAAGCTAACACAGTACCTGCAGCTT
CATACGAAGACGTCTTAAACTTGGTTCGTGAAGAGAAAGTGTTTGCTGCC
ATGATGAGTGCTGATATCGCTGCGTGGTACCAAACTGAGATTCTCGGTAG
CGATGGTAAGAATCCACCATTGCATATTGTCGATAAGCTACCGGCTCATT
TGTACGTTCGATGTGCTATGAATAGCAATCCGAGTAAAGAGCTGATTGAT
GTGATCCGTTGCATGCATACTAACCGTGAAGAAATTTACGACTACACGCA
AACCAAATATCAACGTTATTGCCACACGGAAACCATACATATCGGTACCG
TACGTGAAGTCTTCGAATCTAACGTCGCTATCCAATTCTTGTTCGGTTTA
GTCACCTTCCTCATCGCGTTAGGATTGattcatgacgtcatcgttttcaA
AATGACCAATCAGAATTGGAGAAGGGTTTTCCATCCTAAGCAAGTGTTGG
ATCGACTTTTGGGTAAACAGAATGGGATTGTGGGTAGTCGCACTAGCTCC
AGTTCTGAGGCTGATGAAAATTACGGGCTTGTTGAAAAGGCAAGCTTTTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021663-exon-sc0000391-1491911889:134149..136354 | TCONS_00021663-exon-sc0000391-1491911889:134149..136354 | Clytia hemisphaerica | exon |
| TCONS_00021663-exon-sc0000391-1510915933:134149..136354 | TCONS_00021663-exon-sc0000391-1510915933:134149..136354 | Clytia hemisphaerica | exon |
| TCONS_00021663-exon-sc0000391-1575043694:134149..136354 | TCONS_00021663-exon-sc0000391-1575043694:134149..136354 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000391 | supercontig | sc0000391:134149..136354 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006813 |
potassium ion transport |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
The following BLAST results are available for this feature:
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