TCONS_00021628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021628
Unique NameTCONS_00021628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021628 ID=TCONS_00021628|Name=TCONS_00021628|organism=Clytia hemisphaerica|type=transcript|length=445bp
ctaaaaataaaatttacaaaaatgttgCTGGCAAACTGTGTAATGGCTTA
TTGCCGGCTGTAATTGATAGGTTGAAGTGAACAGGAGTGCAGCCGACAGG
GTTAAGGTTGTGTTAAGGTGCTTATCCAGTGCAGTTTTGAATTTATCAAC
tggaacatttttcaattttttaatgcaCTTTGGCATTGCATTGAGCATGC
ACAGCTTTGCACCTTGTATTGCTAAGGTGCTGTCACATGATTTCGAATTA
TTTGGACAAATGTACTTGGTAACACACATTCGTCCTAGATACAGGTGTTC
TTTTGCTTTGAGGCTATCATTGATGTTTGGTACTATGCTTTCTAGAATGT
GCATATGATCCTATATCGTTCTCTCCTTCTCTGAAGTGAGTATATCTTGA
GCTGCATGGGACTTTCCCAGTAATTTTGAGATGTTCCTCttattt
Run BLAST on NCBI

transcript from alignment at sc0000390:259219..259663

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021628 ID=TCONS_00021628|Name=TCONS_00021628|organism=Clytia hemisphaerica|type=transcript|length=445bp|location=Sequence derived from alignment at sc0000390:259219..259663 (Clytia hemisphaerica)
aaataaGAGGAACATCTCAAAATTACTGGGAAAGTCCCATGCAGCTCAAG
ATATACTCACTTCAGAGAAGGAGAGAACGATATAGGATCATATGCACATT
CTAGAAAGCATAGTACCAAACATCAATGATAGCCTCAAAGCAAAAGAACA
CCTGTATCTAGGACGAATGTGTGTTACCAAGTACATTTGTCCAAATAATT
CGAAATCATGTGACAGCACCTTAGCAATACAAGGTGCAAAGCTGTGCATG
CTCAATGCAATGCCAAAGtgcattaaaaaattgaaaaatgttccaGTTGA
TAAATTCAAAACTGCACTGGATAAGCACCTTAACACAACCTTAACCCTGT
CGGCTGCACTCCTGTTCACTTCAACCTATCAATTACAGCCGGCAATAAGC
CATTACACAGTTTGCCAGcaacatttttgtaaattttatttttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012125XLOC_012125Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021628-exon-sc0000390-1491911889:259219..259663TCONS_00021628-exon-sc0000390-1491911889:259219..259663Clytia hemisphaericaexon
TCONS_00021628-exon-sc0000390-1510915933:259219..259663TCONS_00021628-exon-sc0000390-1510915933:259219..259663Clytia hemisphaericaexon
TCONS_00021628-exon-sc0000390-1575043694:259219..259663TCONS_00021628-exon-sc0000390-1575043694:259219..259663Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000390supercontigsc0000390:259219..259663 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.450988	0.146595	1.19147	0.666098	1.01364	0.480594	0.193272	0.361878	0.12668	0	0	0.200237	0.299938	0	0	0.366426	0	0.115669	0.479411	0.167223	0	0.212686	0	0	0.322804	0.144047	0	0	0	0.169998
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top