TCONS_00021588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021588
Unique NameTCONS_00021588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021588 ID=TCONS_00021588|Name=TCONS_00021588|organism=Clytia hemisphaerica|type=transcript|length=684bp
AAAGCAATAAGAAATTTTCGGTCAAATGTTTTGATTAGGGTCGGTCGGGA
GACGAATGCTTAATGCCTTTTTATCCTTGTTCGCACCTTTCAATTATTAA
AGATTTTACTCCCTTTTTTCAGGGAGATCAAGtgataaaaatttcaacat
GAAAGTTGTATTGTTTTTCGTTCTTGCAAGTTTGTCATTGGTTTATGGAG
CGAGATACAGATTCAATCATGATATCTGTCATTTGAACACCCTAATCACC
AAGAATAACTTGAAGAGATATCAGGGTGGTTCAGTATCCGATTTGGAGGT
TGAGATGACCAAGTTTTGCAGAGTGCCCTCCGTCTTCTGTCGTCTCGACC
GATACATCCTTGGCGATAGAGATGTTAAAGCGTGCTGCGTGCATGCTAAA
CGTTTTTGTGTAGGGCAAAGTCGAGCAAGAGGCAATGCTTGCGGAAGTTA
CTGTCAATGTTGGAAGAAAGAATGCGACGGACATTTTTAATTGATGCCCT
AATTTGTATTTGCATGATTTTTAGAAGTCTTCAattcctttttattttat
tttttatagttTAAACATTTGTTTAACAATCTTTGTCAAGTTAAGTCACA
ATTCTGTGTAACTTTGATTCTCTTGAACCATAAATTGacgaatattttga
aaatctgaaaatgaagacacaaagtgaagaagaa
Run BLAST on NCBI

protein sequence of TCONS_00021588-protein

>TCONS_00021588-protein ID=TCONS_00021588-protein|Name=TCONS_00021588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MKVVLFFVLASLSLVYGARYRFNHDICHLNTLITKNNLKRYQGGSVSDLE
VEMTKFCRVPSVFCRLDRYILGDRDVKACCVHAKRFCVGQSRARGNACGS
YCQCWKKECDGHF
Run BLAST on NCBI

transcript from alignment at sc0000390:88292..89215-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021588 ID=TCONS_00021588|Name=TCONS_00021588|organism=Clytia hemisphaerica|type=transcript|length=924bp|location=Sequence derived from alignment at sc0000390:88292..89215- (Clytia hemisphaerica)
AAAGCAATAAGAAATTTTCGGTCAAATGTTTTGATTAGGGTCGGTCGGGA
GACGAATGCTTAATGCCTTTTTATCCTTGTTCGCACCTTTCAATTATTAA
AGATTTTACTCCCTTTTTTCAGGGAGATCAAGTGATAAAAATTTCAACAT
GAAAGTTGTATTGTTTTTCGTTCTTGCAAGTTTGTCATTGGTTTATGGAG
CGAGATACAGATTCAATCATGATATCTGTCATTTGAACACCCTAATCACC
AAGGTAAAGCTTCTAAACCTTACAAAGTTTGAAATCTGTCGGATCGAAAT
TCGTTTTGAGAATTTTTTTTTAAGAATACTTCAAGGAGCATGTTTTTTTT
CGCATTCAACATATGTTTAGATTGGCATCAGTTCGAAAAAATTCGAAAAA
ATTCGAAAAAAAGAGAAAGCTAAAAACTCATTTCATCGATATGCCTTAAA
GAAAAAATTTAGATAATCTTTCTTGTTTTGTTTTTTGTTGCAGAATAACT
TGAAGAGATATCAGGGTGGTTCAGTATCCGATTTGGAGGTTGAGATGACC
AAGTTTTGCAGAGTGCCCTCCGTCTTCTGTCGTCTCGACCGATACATCCT
TGGCGATAGAGATGTTAAAGCGTGCTGCGTGCATGCTAAACGTTTTTGTG
TAGGGCAAAGTCGAGCAAGAGGCAATGCTTGCGGAAGTTACTGTCAATGT
TGGAAGAAAGAATGCGACGGACATTTTTAATTGATGCCCTAATTTGTATT
TGCATGATTTTTAGAAGTCTTCAATTCCTTTTTATTTTATTTTTTATAGT
TTAAACATTTGTTTAACAATCTTTGTCAAGTTAAGTCACAATTCTGTGTA
ACTTTGATTCTCTTGAACCATAAATTGACGAATATTTTGAAAATCTGAAA
ATGAAGACACAAAGTGAAGAAGAA

Coding sequence (CDS) from alignment at sc0000390:88292..89215-

>TCONS_00021588 ID=TCONS_00021588|Name=TCONS_00021588|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000390:88292..89215- (Clytia hemisphaerica)
AATAACTTGAAGAGATATCAGGGTGGTTCAGTATCCGATTTGGAGGTTGA
GATGACCAAGTTTTGCAGAGTGCCCTCCGTCTTCTGTCGTCTCGACCGAT
ACATCCTTGGCGATAGAGATGTTAAAGCGTGCTGCGTGCATGCTAAACGT
TTTTGTGTAGGGCAAAGTCGAGCAAGAGGCAATGCTTGCGGAAGTTACTG
TCAATGTTGGAAGAAAGAATGCGACGGACATTTTTAAATGAAAGTTGTAT
TGTTTTTCGTTCTTGCAAGTTTGTCATTGGTTTATGGAGCGAGATACAGA
TTCAATCATGATATCTGTCATTTGAACACCCTAATCACCAAGAATAACTT
GAAGAGATATCAGGGTGGTTCAGTATCCGATTTGGAGGTTGAGATGACCA
AGTTTTGCAGAGTGCCCTCCGTCTTCTGTCGTCTCGACCGATACATCCTT
GGCGATAGAGATGTTAAAGCGTGCTGCGTGCATGCTAAACGTTTTTGTGT
AGGGCAAAGTCGAGCAAGAGGCAATGCTTGCGGAAGTTACTGTCAATGTT
GGAAGAAAGAATGCGACGGACATTTTTAAATGAAAGTTGTATTGTTTTTC
GTTCTTGCAAGTTTGTCATTGGTTTATGGAGCGAGATACAGATTCAATCA
TGATATCTGTCATTTGAACACCCTAATCACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012109XLOC_012109Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021588-proteinTCONS_00021588-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021588-exon-sc0000390-1575043694:88963..89215TCONS_00021588-exon-sc0000390-1575043694:88963..89215Clytia hemisphaericaexon
TCONS_00021588-exon-sc0000390-1575043694:88292..88722TCONS_00021588-exon-sc0000390-1575043694:88292..88722Clytia hemisphaericaexon
TCONS_00021588-exon-sc0000390-1510915933:88963..89215TCONS_00021588-exon-sc0000390-1510915933:88963..89215Clytia hemisphaericaexon
TCONS_00021588-exon-sc0000390-1510915933:88292..88722TCONS_00021588-exon-sc0000390-1510915933:88292..88722Clytia hemisphaericaexon
TCONS_00021588-exon-sc0000390-1491911889:88963..89215TCONS_00021588-exon-sc0000390-1491911889:88963..89215Clytia hemisphaericaexon
TCONS_00021588-exon-sc0000390-1491911889:88292..88722TCONS_00021588-exon-sc0000390-1491911889:88292..88722Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000390supercontigsc0000390:88292..89215 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.44814	0.145669	0.422839	0.579155	0.201447	0.159186	0.384103	0.359593	0.0629398	0.0779611	1.05939	0.248716	7.64979	6.96423	0.59376	0.819252	1.45781	2.29878	24.2161	18.1122	10.9044	13.6316	3.93935	7.00717	18.444	24.3334	0.614489	0	0.1658	0.337848
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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