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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021584 ID=TCONS_00021584|Name=TCONS_00021584|organism=Clytia hemisphaerica|type=transcript|length=4095bpRun BLAST on NCBI protein sequence of TCONS_00021584-protein >TCONS_00021584-protein ID=TCONS_00021584-protein|Name=TCONS_00021584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=996bp MADADTDQVFLDSDHNEKVTPNQDTESGAKQVESNTELNGVNQETIDVNLRun BLAST on NCBI transcript from alignment at sc0000390:18397..39428- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021584 ID=TCONS_00021584|Name=TCONS_00021584|organism=Clytia hemisphaerica|type=transcript|length=21032bp|location=Sequence derived from alignment at sc0000390:18397..39428- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000390:18397..39428- >TCONS_00021584 ID=TCONS_00021584|Name=TCONS_00021584|organism=Clytia hemisphaerica|type=CDS|length=20937bp|location=Sequence derived from alignment at sc0000390:18397..39428- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021584 vs. Swiss-Prot (Human)
Match: TIF1A (Transcription intermediary factor 1-alpha OS=Homo sapiens GN=TRIM24 PE=1 SV=3) HSP 1 Score: 196.438 bits (498), Expect = 6.969e-51 Identity = 128/387 (33.07%), Postives = 207/387 (53.49%), Query Frame = 2
Query: 632 CGSCKYNPILIGSVPKLLPCLHSFCEQCLQ--KRYEI-------------------QKLNSNDP-SSVAPRLKCPSCGQEFLVSGNDKPTSAFLNNQFVIESTPNKVKGVKGIKEDHPCTXXXXXXXXXXYCMNCNEWLCDACVSAHQRVKVTKDHIIQSKSCADESGNAESPHGESAETKHKPLFCKIHPQEQLKLFCANCEKLTCRDCQLIEHKDHRYQFIDEAATRHREILKKXXXXXXXXXXXXKDTISDVEKVSDGLSIQEKELEREINNAFNTLIVSIKARQDALLKELNTIVSNKKVLLNKQKKDLTQMKVILEHNHDFAEFAVKGGSNVALLYSRKVLGTRLHNLNSLKYRQRPLAALDLKFNLDVEKLQNYFSKVGSI 1726
C C N + PKLLPCLHSFC++CL +RY + ++ + P ++ ++CP C QE ++N FV ++T +V K + CTSC+D++ A+ +C+ C EWLC C+ AHQRVK TKDH ++ K SP T +P+FC H +EQLKL+C C+KLTCRDCQL+EHK+HRYQFI+EA + I+ L+ L +K T + ++ ++ +K++E++I A TL+V I + ALL +L ++ + ++ L +Q++++ + LEH F+++AV GS+ ALLYS++++ RL +L + P+ ++F+ D +GS+
Sbjct: 56 CAVCHQN--IQSRAPKLLPCLHSFCQRCLPAPQRYLMLPAPMLGSAETPPPVPAPGSPVSGSSPFATQVGVIRCPVCSQECA-------ERHIIDNFFVKDTT--EVPSSTVEKSNQVCTSCEDNAEANGFCVECVEWLCKTCIRAHQRVKFTKDHTVRQK-------EEVSPEAVGV-TSQRPVFCPFHKKEQLKLYCETCDKLTCRDCQLLEHKEHRYQFIEEAFQNQKVIIDTLITKLMEKTKYIKFTGNQIQNRIIEVNQNQKQVEQDIKVAIFTLMVEINKKGKALLHQLESLAKDHRMKLMQQQQEVAGLSKQLEHVMHFSKWAVSSGSSTALLYSKRLITYRLRHLLRARCDASPVTNNTIQFHCDPSFWAQNIINLGSL 423 HSP 2 Score: 161.77 bits (408), Expect = 4.917e-40 Identity = 79/197 (40.10%), Postives = 118/197 (59.90%), Query Frame = 2
Query: 2651 DEGQNEDYCGVCRNGGELLCCDTCPKVYHLHCHIPSLHALPSDSWSCYLCKDIGKE------NSSNLGTKRKHIEG---MTDWENKLCRKILLNLFVHSDSLPFHHKVSKAQAPDYYKVITRPMDLNTILTKLSPNHFENFQMLA---SFISDIRLVFSNCFVYNSAESEVCKMGRRLEGFFDQLLRKYVPHELHYP 3205
++ NED+C VC+NGGELLCC+ CPKV+HL CH+P+L PS W C C+D+ K ++ + +++K EG +T + + C ++LL L+ H SL F V PDYYK+I PMDL+TI +L E++ M + F++D RL+F NC +N +SEV G +LE +F++LL+ P E +P
Sbjct: 821 EDDPNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDAPSHNSEKKKTEGLVKLTPIDKRKCERLLLFLYCHEMSLAFQDPVP-LTVPDYYKIIKNPMDLSTIKKRLQ----EDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYP-EKRFP 1011 The following BLAST results are available for this feature:
BLAST of TCONS_00021584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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