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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021575 ID=TCONS_00021575|Name=TCONS_00021575|organism=Clytia hemisphaerica|type=transcript|length=5900bpRun BLAST on NCBI protein sequence of TCONS_00021575-protein >TCONS_00021575-protein ID=TCONS_00021575-protein|Name=TCONS_00021575-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1542bp MVLFPITRNLCWFICLSITLTINETHQQQMGDAGGAGGGGGKEEATYDAKRun BLAST on NCBI transcript from alignment at sc0000390:41112..52240+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021575 ID=TCONS_00021575|Name=TCONS_00021575|organism=Clytia hemisphaerica|type=transcript|length=11129bp|location=Sequence derived from alignment at sc0000390:41112..52240+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000390:41112..52240+ >TCONS_00021575 ID=TCONS_00021575|Name=TCONS_00021575|organism=Clytia hemisphaerica|type=CDS|length=46290bp|location=Sequence derived from alignment at sc0000390:41112..52240+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021575 vs. Swiss-Prot (Human)
Match: ARSB (Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1) HSP 1 Score: 340.887 bits (873), Expect = 1.010e-101 Identity = 199/540 (36.85%), Postives = 300/540 (55.56%), Query Frame = 2
Query: 476 AKRPNIVFIVAEDLGWDDIALHGSKQIQTPTMDDLARSGVLLNSYYVSPSPFATRVEIMTGKYATKLGVQHGIFHNKQPSGLPENEKILPEYLKDLGYSTHAVGKWGLGFYKEKMLPWKRGFDTFYGGLTSSTCDYYTHS------AFN-EDYGLDLRSNEEVVHNETGKYATELYTEQAVDIINTYSEEKPFFLYVSHQAVHSGNLYDPLQVPDRYLNNLKYIKDPKRQKFAGMVNALDESILNISIALSDRGFMSNTVVIFTSLSGGAVGGMELSMGSNYPLRGSKMTLWEGGLRTVAFLVSDLINDTSFVNEELFHSTDWLPTILHLATAGEDMPDVIPQLDGYNTWDSMTHKKTISPRFEILHQFDP--IQNNQC--------------------------ALRVGDYKIIVNQDIGY--YGDWFPRPSE--IDELKNRTEPKNTMSNAKIRCDKNYPHPFLQMHAPPCDPMKKPCLFNIQWDPCEFHNLASFMPNTLKVLRDRLNYYHRVVKKPSYPALDNAADPENYGGVWGPW 1978
++ P++VF++A+DLGW+D+ HGS+ I+TP +D LA GVLL++YY P +R +++TG+Y + G+QH I QPS +P +EK+LP+ LK+ GY+TH VGKW LG Y+++ LP +RGFDT++G L S DYY+H A N LD R EEV Y+T ++T++A+ +I + EKP FLY++ Q+VH +PLQVP+ YL +I+D R +AGMV+ +DE++ N++ AL G +NTV IF++ +GG L+ G+N+PLRG K +LWEGG+R V F+ S L+ N EL H +DWLPT++ LA + LDG++ W +++ + + SPR E+LH DP + ++ C A+R G++K++ GY G WFP PS+ + E+ + P T+ LF+I DP E H+L+ P+ + L RL +YH+ +PA D DP+ GVWGPW
Sbjct: 42 SRPPHLVFLLADDLGWNDVGFHGSR-IRTPHLDALAAGGVLLDNYYTQPLCTPSRSQLLTGRYQIRTGLQHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSE-DYYSHERCTLIDALNVTRCALDFRDGEEVATGYKNMYSTNIFTKRAIALITNHPPEKPLFLYLALQSVH-----EPLQVPEEYLKPYDFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQT----LAGGNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGVKNRELIHISDWLPTLVKLARGHTNG---TKPLDGFDVWKTIS-EGSPSPRIELLHNIDPNFVDSSPCPRNSMAPAKDDSSLPEYSAFNTSVHAAIRHGNWKLLT----GYPGCGYWFPPPSQYNVSEIPSSDPPTKTL-----------------------------WLFDIDRDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYFPAQDPRCDPKAT-GVWGPW 532 The following BLAST results are available for this feature:
BLAST of TCONS_00021575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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