TCONS_00021567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021567
Unique NameTCONS_00021567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021567 ID=TCONS_00021567|Name=TCONS_00021567|organism=Clytia hemisphaerica|type=transcript|length=355bp
TCttcacaaagaaaaaaagttccaccggagctgagacagggatgtggtAA
TGTATACAGCTTCATATCCTAATAAGGCCCAAACACACGCACTCGTGTCA
TACTATGGATTCGTAATTCCTCAAAAGTCAAGTTTTCCTTTAATCCATAG
AAAATATGAGAATGTTCACAATTACTATGTTTCTGGTTCTGGTTCAAGAA
TCAAGTTGTACTGCGGTAGTATAGTTTCATTAACATCTTCAAAAACTTTC
ATTTCAGTAAAGGGAACATCTTCTTTTGCAATTTGAATATACCagttctt
ttgaaatttgacaatACATATTCGATGCAAAACGTTTGTTTCATGAAGTT
TATAT
Run BLAST on NCBI

transcript from alignment at sc0000389:166271..166625

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021567 ID=TCONS_00021567|Name=TCONS_00021567|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0000389:166271..166625 (Clytia hemisphaerica)
ATATAAACTTCATGAAACAAACGTTTTGCATCGAATATGTattgtcaaat
ttcaaaagaactGGTATATTCAAATTGCAAAAGAAGATGTTCCCTTTACT
GAAATGAAAGTTTTTGAAGATGTTAATGAAACTATACTACCGCAGTACAA
CTTGATTCTTGAACCAGAACCAGAAACATAGTAATTGTGAACATTCTCAT
ATTTTCTATGGATTAAAGGAAAACTTGACTTTTGAGGAATTACGAATCCA
TAGTATGACACGAGTGCGTGTGTTTGGGCCTTATTAGGATATGAAGCTGT
ATACATTaccacatccctgtctcagctccggtggaactttttttctttgt
gaaGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012093XLOC_012093Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021567-exon-sc0000389-1491911889:166271..166625TCONS_00021567-exon-sc0000389-1491911889:166271..166625Clytia hemisphaericaexon
TCONS_00021567-exon-sc0000389-1510915933:166271..166625TCONS_00021567-exon-sc0000389-1510915933:166271..166625Clytia hemisphaericaexon
TCONS_00021567-exon-sc0000389-1575043694:166271..166625TCONS_00021567-exon-sc0000389-1575043694:166271..166625Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000389supercontigsc0000389:166271..166625 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.0939	12.559	20.0848	18.304	18.6787	8.80431	20.6192	16.6712	9.21464	11.9211	8.61664	4.85506	6.78764	7.21686	7.17508	5.6269	10.7626	11.7793	5.94118	11.6231	12.2171	13.0641	19.7818	17.7312	12.0012	13.5049	12.9947	10.668	13.4854	15.6631
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top