TCONS_00021534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021534
Unique NameTCONS_00021534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021534 ID=TCONS_00021534|Name=TCONS_00021534|organism=Clytia hemisphaerica|type=transcript|length=838bp
GAAAATCTTGATGAATTTAGAACGAGGTTGACATCATCTTAGAAGTTGCA
CATATCACAACAACTCAAAAATATGGAGAACAATTTTTAGAACATGCAAA
TTTTATGATAGGATCTCCTACTGCTTTGGCTGATGAGGATCTTGAAACCA
GACTGAGAAAGAAATCCATAGAAACTGGTTATGGATTGTTTGTTCCTGCT
GGTGCATTTTGGGGTGGTGAAGATGTACAAAAGATGGCTGATCAAGGGTC
ATTGAAGGGTTTGAGAGTGACAATGAAAAAACATCCATCTTGTTTCAAAG
TCCTTGGCAAAGTAGCTGAAAGGAATGAAAAGGTTGGAGATGAACCTGTT
GTATTATACGAAGGTCCAGTTCGAAAGCTTTGTCCGTTGGCACCTGCTAA
TGTAAACACGATGGCCTGTGCTGCACTAGCGGCACATAATCTAGGTTTTG
ATAAAGTTCAAGGATGTCTTGTAGCTGATCGAAGtttgaaaTGCCACATA
GTAGAGATAGAAGTGACAGGACCTCCTTTAGGTGATGATGGTGAAGAATT
CACAGTCAAAACAGTTCGAACGAATCCAAGCAAAACTGGAGTTGTTACTG
GTAACGCAACGTATGCATCCTTCTTCCAAAGTCTAAGGCGTGCATATGGA
AAAGGTGGTGGTATCCATttatgctgattcagcaaaaacGAAATTCTAGA
GTATTTTTATAGCTTTATTGTAGTTAGGTAGCATAGATTTATTATCAAGT
TATTATTAATTATCATTTATTTTTGTATACCAATTAATAGGAgattagtt
tttttataaaaatcatctATCACAAATTAAAGAGTAAT
Run BLAST on NCBI

transcript from alignment at sc0000389:155749..159009+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021534 ID=TCONS_00021534|Name=TCONS_00021534|organism=Clytia hemisphaerica|type=transcript|length=3261bp|location=Sequence derived from alignment at sc0000389:155749..159009+ (Clytia hemisphaerica)
GAAAATCTTGATGAATTTAGAACGAGGTGAAAATACTTTTCTTTCTGATC
TATCTATGATTTTTCGGAAGGACTAAATGAATCTTTCTAATCCTTTAAAC
CCAGAGGAAACGAAATATGCTGTCAAAACCACTTAAAAATTGGCTAAACT
TTTTGATGGAAAACACTTTGAAactattgaaaaatatattttagaaACCT
TCTCATTCTTGTTTCATATTCTAATGTTTCTTCACTAGAAAGGTTGACAT
CATCTTAGAAGTTGCACATATCACAACAACTCAAAAATATGGAGAACAAT
TTTTAGAACATGCAAATTTTATGGTAAAGTCTTCATTCTTGTGAGCTTTT
TATGAGATGTCTTCTGTCTTTAAGATGTGGAAGATCTTGAGCAATGTTTT
AGTTTCAAAAACTCAAATCTTATATTTATAATGTCTGTTTGGTTTCTTCT
GGCAGTGAATGAAGTTCAATGCAATtgattgtgaaaaaaaaatgtcaaca
aaaaaaaacctttcattcacaaatttgacaaattcgCTTTCAACATGTCG
AAAGATAAATTGACTCTCAGTATCTCTCTTTCATCAGATAGGATCTCCTA
CTGCTTTGGCTGATGAGGATCTTGAAACCAGACTGAGAAAGAAATCCATA
GAAACTGGTTATGGATTGTTTGTTCCTGCTGGTGCATTTTGGGGTGGTGA
AGATGTACAAAAGATGGCTGATCAAGGGTCATTGAAGGTGATCTTAGACA
AAATTAAGTCTCTAAAAAGACGAGACAATATTTATTTCTATGAGGATGGA
TGAGCTTTTATAAAGAGtaaaaaataagtatttttGATACACCTATCAAC
CCAGTCCGCTTTTTAGGGGACTTGTAATAAATTTACGAGGAGGATTTGAG
GTGAACGCCATTTTTTAGGCCATATCTAAATCAAACCAACAAACTCCTGC
CAAAACTCAGTGATATTTTACCAAGTCTCTGTGGTGGGGTGCAAactatt
tttagcatttgaaTTGCTTAACTATATTGATGTTACTTTATTGCTTCAAT
GCAAGGGTATCTTTCAATCTTATATGTTTGACAATTGAACTCCTACACTT
ATATTTTCAATACTGTTGTTTAGAAGAAGTCtccttgttttttttgtcac
cAGGTTCCTCAAAAGCTGACCACGCCGCTAAGGGTTGATAGATGGTGTAT
AGCGTTTAAAAAAAGGGTTGATATAATTTAGAATCTGCGGTAGATGTTGA
AGGGTTAATAAATTGATGCGCCTTTTAGAGTTGAGGTAAATCTTAACATA
ATATGTTTTCATTTCCAGGGTTTGAGAGTGACAATGAAAAAACATCCATC
TTGTTTCAAAGTCCTTGGCAAAGTAGCTGAAAGGAATGAAAAGGTTGGAG
ATGAACCTGTTGTATTATACGAAGGTTAGAtaggtctttctttggtttaT
CTATACTACTTATATGACTTGCTCAAAATCCTCAACGTATTAATTCTAGA
GTAAAATTAACCAAATTTTGTACAATCTTTTGCTTACATTTAGGTCCAGT
TCGAAAGCTTTGTCCGTTGGCACCTGCTAATGTAAACACGATGGCCTGTG
CTGCACTAGCGGCACATAATCTAGGTTTTGATAAAGTTCAAGGATGTCTT
GTAGCTGATCGAAGGTATACAGATCTTGAACGTGGATATCcaagctgcaa
attattttcttattttgaagaTTCTGCTATTTACAGCTTGGTCTACCTAG
ATGCTCTTAAACCCCTTCTGATATATTGGAATGTAAATTGCTTTAGAAGG
ACCTTAAGGTAGAGCAGAAACATCATAAATTTAAACaaagtttacagcct
ggatatcaaGGCTAAACAGATCATGAACGTGGTTCGAATAAATATAATTG
AATTGAGGTTTTTTTATCATTACCTTTGttatgaaaatgaagaataagAC
TAAgatttatttttggaaattaaacACAATCATCAGCCAAATAAAATTAT
TGATCATAAATTTAGTGATAATTGTtccagtgttttttttttcagtttga
aaTGCCACATAGTAGAGATAGAAGTGACAGGACCTCCTTTAGGTGATGAT
GGTGAAGAATTCACAGTCAAAACAGTTCGAACGAATCCAAGCAAAACTGG
AGTTGTTACTGGTAACGCAACGTATGCATCCTTCTTCCAAAGTCTAAGGC
GTaagtctttttttccaaaactaTTTCTGTTCAATACAAAATCAGTACAG
GTTATCTTGCCAATTCGAACTCAAATGGGAACtttaatttgttcgagtta
aagagagattcgaattatagaaagtatttttacgAGAACTGATAATTAGT
TCGAATTGAGAACgattcaaataatagaagttcaaatttgggaaatcctt
tttttttttttttttgggtgtgttttttttttggggggggggcttttgTA
TCCAAGTTTAGGTATTATCAcattttttttgggtttttttttttttttgg
ggggggggcttttgTATCCAAGTTTAGGTATTATCAcattttttttgggt
ttttttttttttttggggggggggcttttgTATCCAAGTTTAGGTATTAT
CAcattttttttgggtttttttttttttttggggggggggcttttgTATC
CAAGTTTAGGTATTATCAcattttttttgggtttttttttttttttgggg
ggggggcttttgTATCCAAGTTTAGGTATTATCAcattttttttgggttt
ttttttttttttggggggggggcttttgTATCCAAGTTTAGGTATTATCA
cattttttttgggtttttttttttttttggggggggggcttttgTATCCA
AGTTTAGGTATTATCAcattttttttgggtttttttttttttttgggggg
gggggcttttgtATCCAAGTTTAGGTATTATCACattattttcgtgtttt
tttaaGTCTGGTGGTTTAACAAAATCTTCcagggaaaatttttattgaaa
attttaacaaaatctttcaggggaaattgtttttgaaagttaCTTTATCA
CTTTCTTTTTAGGTGCATATGGAAAAGGTGGTGGTATCCATttatgctga
ttcagcaaaaacGAAATTCTAGAGTATTTTTATAGCTTTATTGTAGTTAG
GTAGCATAGATTTATTATCAAGTTATTATTAATTATCATTTATTTTTGTA
TACCAATTAATAGGAgattagtttttttataaaaatcatctATCACAAAT
TAAAGAGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012074XLOC_012074Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021534-exon-sc0000389-1491911889:155749..155774TCONS_00021534-exon-sc0000389-1491911889:155749..155774Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1510915933:155749..155774TCONS_00021534-exon-sc0000389-1510915933:155749..155774Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1575043694:155749..155774TCONS_00021534-exon-sc0000389-1575043694:155749..155774Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1491911889:155991..156071TCONS_00021534-exon-sc0000389-1491911889:155991..156071Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1510915933:155991..156071TCONS_00021534-exon-sc0000389-1510915933:155991..156071Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1575043694:155991..156071TCONS_00021534-exon-sc0000389-1575043694:155991..156071Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1491911889:156336..156485TCONS_00021534-exon-sc0000389-1491911889:156336..156485Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1510915933:156336..156485TCONS_00021534-exon-sc0000389-1510915933:156336..156485Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1575043694:156336..156485TCONS_00021534-exon-sc0000389-1575043694:156336..156485Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1491911889:157067..157172TCONS_00021534-exon-sc0000389-1491911889:157067..157172Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1510915933:157067..157172TCONS_00021534-exon-sc0000389-1510915933:157067..157172Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1575043694:157067..157172TCONS_00021534-exon-sc0000389-1575043694:157067..157172Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1491911889:157292..157412TCONS_00021534-exon-sc0000389-1491911889:157292..157412Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1510915933:157292..157412TCONS_00021534-exon-sc0000389-1510915933:157292..157412Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1575043694:157292..157412TCONS_00021534-exon-sc0000389-1575043694:157292..157412Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1491911889:157794..157948TCONS_00021534-exon-sc0000389-1491911889:157794..157948Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1510915933:157794..157948TCONS_00021534-exon-sc0000389-1510915933:157794..157948Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1575043694:157794..157948TCONS_00021534-exon-sc0000389-1575043694:157794..157948Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1491911889:158811..159009TCONS_00021534-exon-sc0000389-1491911889:158811..159009Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1510915933:158811..159009TCONS_00021534-exon-sc0000389-1510915933:158811..159009Clytia hemisphaericaexon
TCONS_00021534-exon-sc0000389-1575043694:158811..159009TCONS_00021534-exon-sc0000389-1575043694:158811..159009Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000389supercontigsc0000389:155749..159009 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.47178	1.47449	0.567058	0.49873	0.93458	1.85468	1.00134	2.76421	5.4366	7.07785	3.32289	3.87355	4.82338	4.9343	3.88867	4.71059	9.65721	8.22703	1.9906	3.10316	0.534271	1.55333	2.46809	3.28886	5.5839	0.885503	0.387288	0.334393	2.45885	2.37971
Blast
[Close]
BLAST of TCONS_00021534 vs. Swiss-Prot (Human)
Match: ASPD (Putative L-aspartate dehydrogenase OS=Homo sapiens GN=ASPDH PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 2.794e-54
Identity = 103/218 (47.25%), Postives = 136/218 (62.39%), Query Frame = 3 
Query:   30 DIILEVAHITTTQKYGEQFLEHANFMIGSPTALADEDLETRLRKKSIETGYGLFVPAGAFWGGEDVQKMADQGSLKGLRVTMKKHPSCFKVLGKVAERNEKVGDEPVVLYEGPVRKLCPLAPANVNTMACAALAAHNLGFDKVQGCLVADRSL-KCHIVEIEVTGPPLGDDGEEFTVKTVRTNPSKTGVVTGNATYASFFQSLRRA--YGKGGGIHLC 674
            D+++EVAH     + G Q L HAN ++GSP+AL+D+  E +L + S    + +FV  GA WG ED++++   G L+ LRVTM  HP  F++ G +A  +        VLYEGPVR LCP AP N NTMA AALAA +LGFD V G LVAD SL   H+V++E++G P G  G  F V T R NP++ G VTG+AT  +F+QSL          GIHLC
Sbjct:   69 DLVVEVAHPKIIHESGAQILRHANLLVGSPSALSDQTTERQLLEASQHWDHAVFVARGALWGAEDIRRLDAAGGLRSLRVTMATHPDGFRLEGPLAAAHSP--GPCTVLYEGPVRGLCPFAPRNSNTMAAAALAAPSLGFDGVIGVLVADTSLTDMHVVDVELSG-PRGPTGRSFAVHTRRENPAEPGAVTGSATVTAFWQSLLACCQLPSRPGIHLC 283
The following BLAST results are available for this feature:
BLAST of TCONS_00021534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASPD2.794e-5447.25Putative L-aspartate dehydrogenase OS=Homo sapiens... [more]
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