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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021521 ID=TCONS_00021521|Name=TCONS_00021521|organism=Clytia hemisphaerica|type=transcript|length=1808bp
caggtcATCAGGGGATTGTAAAATTTTGAGGCGTAGGAATTAAACTGTAA
ACGAATTTTCCACATTTATATAACAGTATTATATTTAAGTACAGTGTGGT
AAAATGTGTGGTTGAAATGCATGTAGACGATAAAGGAGAAATCTTTTCAA
GAGAAACCAAGCTGTACAAACCTTATAAATCCAAATGAAATATTTATCGA
AAAACCACACATTTTTTAACACTAGAGGGAATTGATATTTCACAAGACAA
ATTACCGAGTACTTCTGAACATGACTTCCAGCACAGTCAAAGAAGTTCAA
CCTGATACAAACTCCCATCAATGGCGGTATCATATCACACCAGATTTACG
TATGTTACCCTCAAAGTTATCGTTTATGTTTTTCTACGGCAGCCATGCCT
GTTACATAATGTACTTCAACATATTTTTTACGTCAGTTGGACTAACGGCG
TCGCAAGCTGGGCAGATATCTGGAATACATGCTTTGTCGTCGTTACTCGG
TGCCCCTTTATGGGGTTTGTTGGCTGACTACACTGGAAAACGTAAAGTCC
TTATGCTGGTCAGTTCCATAATAaaattatgtttgatttttccGCTACCT
TGGATTGCTGAGTATGTCAACTACATTGATATGAGACAACATGAGAAATT
CAGACACGACAAAGAACTGCAACACGTAAAGTATTGTACAACACTTTGTG
GTGACGATACAATGTTTCATGTCATGATGTCGATGTTAATAGCCTCTGGC
CCTTTGATACTGGCAATAACTTCATTCCTTGATTCTTTTGTGATGAACTT
AGTTAAAAGCAGTACTAAGGAAACTGATTTTGGACGCCAGCGCCTATTTG
GATCAATTGGTTTTGGCTCAGCAAGCTTAATCGCTGGATACGCTGTAGAC
AATTACACCAACAAATATCTCTCCGTTTATACGGCTGCTTTTTATGTTTT
TCTACCTTTATGGCTCTTGTTCATTCCTCTAGCATTTTACGTTGCTATGG
TTTCCGAGCTAGAGACGGCAGTTAAACCACAATATTTACATGCTTTTCCA
GAGAGAAAGAATGAACAAAGATCACTGACAATGTCTGTTCTAAAGACTTG
TGGAACTTTACCGAATATGGTTTTCCTGTTTACAGTCTTTCTAACAGGAA
TATGCAATGGCTTAATGATTGGTTTTTTCTATCTATACATGAAACGAGAA
TTATCTTCATCAAACACTGTTATGGGAGTAAGCATTGCGTTTGGCAATCT
AGGTGAGCTATTCATGTTTCCTGTATCATATAAATTGATTAAAATGGTGG
GCACAATCCCTTGTTTAATATCTggtatttttgcatattttctaCGGTAT
ATTTTCTTGTCTATTATTACTGATCCATGGCTGTCATTACCAATACAACT
GTTGAATGCGTTCTGCTTTGCGTTGTTCATTGCTGCAGCAATAGAACACG
TTGTTAAAATTTCACCCAAAGAGATTTGTACAACTATGGTCAGTATTGTC
AATGCTCTCAAATTTGGTTTTGGAATTCTTGTTGCCAATATGGCGGGTGG
AGCTACGTATGATAGTTACGGTGGCAGAATGTTGTTTAAAGGGATGGCTT
TTATTTGCTTGGCTTGGACATGCTTTATGATTATTTATTACTATGGAGAT
AAACTTTTCCGAACACTTTGTGTTTCAGTGAACGACGATAAAAAGGATAC
GAAGTCTTCACTAAATCATAGAGACtaaatttaaagtttaaaagttaGAT
TGTGTGTCTTTTCTTTTTGAGTGAGTATTTAACTCTCTACCCAGAGGAAT
GATATTCC Run BLAST on NCBI protein sequence of TCONS_00021521-protein >TCONS_00021521-protein ID=TCONS_00021521-protein|Name=TCONS_00021521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
MTSSTVKEVQPDTNSHQWRYHITPDLRMLPSKLSFMFFYGSHACYIMYFN
IFFTSVGLTASQAGQISGIHALSSLLGAPLWGLLADYTGKRKVLMLVSSI
IKLCLIFPLPWIAEYVNYIDMRQHEKFRHDKELQHVKYCTTLCGDDTMFH
VMMSMLIASGPLILAITSFLDSFVMNLVKSSTKETDFGRQRLFGSIGFGS
ASLIAGYAVDNYTNKYLSVYTAAFYVFLPLWLLFIPLAFYVAMVSELETA
VKPQYLHAFPERKNEQRSLTMSVLKTCGTLPNMVFLFTVFLTGICNGLMI
GFFYLYMKRELSSSNTVMGVSIAFGNLGELFMFPVSYKLIKMVGTIPCLI
SGIFAYFLRYIFLSIITDPWLSLPIQLLNAFCFALFIAAAIEHVVKISPK
EICTTMVSIVNALKFGFGILVANMAGGATYDSYGGRMLFKGMAFICLAWT
CFMIIYYYGDKLFRTLCVSVNDDKKDTKSSLNHRD Run BLAST on NCBI transcript from alignment at sc0000388:152966..154773 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021521 ID=TCONS_00021521|Name=TCONS_00021521|organism=Clytia hemisphaerica|type=transcript|length=1808bp|location=Sequence derived from alignment at sc0000388:152966..154773 (Clytia hemisphaerica)
GGAATATCATTCCTCTGGGTAGAGAGTTAAATACTCACTCAAAAAGAAAA
GACACACAATCtaacttttaaactttaaatttaGTCTCTATGATTTAGTG
AAGACTTCGTATCCTTTTTATCGTCGTTCACTGAAACACAAAGTGTTCGG
AAAAGTTTATCTCCATAGTAATAAATAATCATAAAGCATGTCCAAGCCAA
GCAAATAAAAGCCATCCCTTTAAACAACATTCTGCCACCGTAACTATCAT
ACGTAGCTCCACCCGCCATATTGGCAACAAGAATTCCAAAACCAAATTTG
AGAGCATTGACAATACTGACCATAGTTGTACAAATCTCTTTGGGTGAAAT
TTTAACAACGTGTTCTATTGCTGCAGCAATGAACAACGCAAAGCAGAACG
CATTCAACAGTTGTATTGGTAATGACAGCCATGGATCAGTAATAATAGAC
AAGAAAATATACCGtagaaaatatgcaaaaataccAGATATTAAACAAGG
GATTGTGCCCACCATTTTAATCAATTTATATGATACAGGAAACATGAATA
GCTCACCTAGATTGCCAAACGCAATGCTTACTCCCATAACAGTGTTTGAT
GAAGATAATTCTCGTTTCATGTATAGATAGAAAAAACCAATCATTAAGCC
ATTGCATATTCCTGTTAGAAAGACTGTAAACAGGAAAACCATATTCGGTA
AAGTTCCACAAGTCTTTAGAACAGACATTGTCAGTGATCTTTGTTCATTC
TTTCTCTCTGGAAAAGCATGTAAATATTGTGGTTTAACTGCCGTCTCTAG
CTCGGAAACCATAGCAACGTAAAATGCTAGAGGAATGAACAAGAGCCATA
AAGGTAGAAAAACATAAAAAGCAGCCGTATAAACGGAGAGATATTTGTTG
GTGTAATTGTCTACAGCGTATCCAGCGATTAAGCTTGCTGAGCCAAAACC
AATTGATCCAAATAGGCGCTGGCGTCCAAAATCAGTTTCCTTAGTACTGC
TTTTAACTAAGTTCATCACAAAAGAATCAAGGAATGAAGTTATTGCCAGT
ATCAAAGGGCCAGAGGCTATTAACATCGACATCATGACATGAAACATTGT
ATCGTCACCACAAAGTGTTGTACAATACTTTACGTGTTGCAGTTCTTTGT
CGTGTCTGAATTTCTCATGTTGTCTCATATCAATGTAGTTGACATACTCA
GCAATCCAAGGTAGCggaaaaatcaaacataatttTATTATGGAACTGAC
CAGCATAAGGACTTTACGTTTTCCAGTGTAGTCAGCCAACAAACCCCATA
AAGGGGCACCGAGTAACGACGACAAAGCATGTATTCCAGATATCTGCCCA
GCTTGCGACGCCGTTAGTCCAACTGACGTAAAAAATATGTTGAAGTACAT
TATGTAACAGGCATGGCTGCCGTAGAAAAACATAAACGATAACTTTGAGG
GTAACATACGTAAATCTGGTGTGATATGATACCGCCATTGATGGGAGTTT
GTATCAGGTTGAACTTCTTTGACTGTGCTGGAAGTCATGTTCAGAAGTAC
TCGGTAATTTGTCTTGTGAAATATCAATTCCCTCTAGTGTTAAAAAATGT
GTGGTTTTTCGATAAATATTTCATTTGGATTTATAAGGTTTGTACAGCTT
GGTTTCTCTTGAAAAGATTTCTCCTTTATCGTCTACATGCATTTCAACCA
CACATTTTACCACACTGTACTTAAATATAATACTGTTATATAAATGTGGA
AAATTCGTTTACAGTTTAATTCCTACGCCTCAAAATTTTACAATCCCCTG
ATgacctg Coding sequence (CDS) from alignment at sc0000388:152966..154773 >TCONS_00021521 ID=TCONS_00021521|Name=TCONS_00021521|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at sc0000388:152966..154773 (Clytia hemisphaerica)
ttaGTCTCTATGATTTAGTGAAGACTTCGTATCCTTTTTATCGTCGTTCA
CTGAAACACAAAGTGTTCGGAAAAGTTTATCTCCATAGTAATAAATAATC
ATAAAGCATGTCCAAGCCAAGCAAATAAAAGCCATCCCTTTAAACAACAT
TCTGCCACCGTAACTATCATACGTAGCTCCACCCGCCATATTGGCAACAA
GAATTCCAAAACCAAATTTGAGAGCATTGACAATACTGACCATAGTTGTA
CAAATCTCTTTGGGTGAAATTTTAACAACGTGTTCTATTGCTGCAGCAAT
GAACAACGCAAAGCAGAACGCATTCAACAGTTGTATTGGTAATGACAGCC
ATGGATCAGTAATAATAGACAAGAAAATATACCGtagaaaatatgcaaaa
ataccAGATATTAAACAAGGGATTGTGCCCACCATTTTAATCAATTTATA
TGATACAGGAAACATGAATAGCTCACCTAGATTGCCAAACGCAATGCTTA
CTCCCATAACAGTGTTTGATGAAGATAATTCTCGTTTCATGTATAGATAG
AAAAAACCAATCATTAAGCCATTGCATATTCCTGTTAGAAAGACTGTAAA
CAGGAAAACCATATTCGGTAAAGTTCCACAAGTCTTTAGAACAGACATTG
TCAGTGATCTTTGTTCATTCTTTCTCTCTGGAAAAGCATGTAAATATTGT
GGTTTAACTGCCGTCTCTAGCTCGGAAACCATAGCAACGTAAAATGCTAG
AGGAATGAACAAGAGCCATAAAGGTAGAAAAACATAAAAAGCAGCCGTAT
AAACGGAGAGATATTTGTTGGTGTAATTGTCTACAGCGTATCCAGCGATT
AAGCTTGCTGAGCCAAAACCAATTGATCCAAATAGGCGCTGGCGTCCAAA
ATCAGTTTCCTTAGTACTGCTTTTAACTAAGTTCATCACAAAAGAATCAA
GGAATGAAGTTATTGCCAGTATCAAAGGGCCAGAGGCTATTAACATCGAC
ATCATGACATGAAACATTGTATCGTCACCACAAAGTGTTGTACAATACTT
TACGTGTTGCAGTTCTTTGTCGTGTCTGAATTTCTCATGTTGTCTCATAT
CAATGTAGTTGACATACTCAGCAATCCAAGGTAGCggaaaaatcaaacat
aatttTATTATGGAACTGACCAGCATAAGGACTTTACGTTTTCCAGTGTA
GTCAGCCAACAAACCCCATAAAGGGGCACCGAGTAACGACGACAAAGCAT
GTATTCCAGATATCTGCCCAGCTTGCGACGCCGTTAGTCCAACTGACGTA
AAAAATATGTTGAAGTACATTATGTAACAGGCATGGCTGCCGTAGAAAAA
CATAAACGATAACTTTGAGGGTAACATACGTAAATCTGGTGTGATATGAT
ACCGCCATTGATGGGAGTTTGTATCAGGTTGAACTTCTTTGACTGTGCTG
GAAGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021521-exon-sc0000388-1491911889:152966..154773 | TCONS_00021521-exon-sc0000388-1491911889:152966..154773 | Clytia hemisphaerica | exon |
| TCONS_00021521-exon-sc0000388-1510915933:152966..154773 | TCONS_00021521-exon-sc0000388-1510915933:152966..154773 | Clytia hemisphaerica | exon |
| TCONS_00021521-exon-sc0000388-1575043694:152966..154773 | TCONS_00021521-exon-sc0000388-1575043694:152966..154773 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000388 | supercontig | sc0000388:152966..154773 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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