TCONS_00021518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021518
Unique NameTCONS_00021518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021518 ID=TCONS_00021518|Name=TCONS_00021518|organism=Clytia hemisphaerica|type=transcript|length=568bp
tttttgtaTCATTTTCAAATGTAACATCCTAGTTTAGAAGTGTAAAGCTC
TGATGGTACGAAAACTTAGTCGGAAAAGGGGAAACAAGTATTCTGGTTTG
AGAAATCTCTGGTCCTTTTTTTTTTGGGTGGGGGTGGTGGTGGTTGAGTT
TAATAGTCAATTCAATGAAATGGGAGCCTTCAAaaacatgcatagccatc
aaatgcctgaccattcaaagcagcaaaatttcaaatcaaataaaccatGC
AGCTCTGCTCGgtgctctactctaccattttagaatctcatATTTGCTGC
GCAAAATTTTTTGCAACCTTTCAACATTTTGGgtcaataaaaacatattc
ataTCATGTTTCAAAGTATTTCCAtacagtttttaaaaaaaacaaagatt
gttttgaaaaattctgacaaTATCAATGAAGGAAACTTTTTAGCCCTCTg
caagatttttcattttcattctttCAATATTTGAAGATTAGTATTCTCAG
TGGACAGTGCGGGTATACAAAGTTCTATGGCACTGCAATTTTCCTCTTCC
TCTACTAATACCATACAT
Run BLAST on NCBI

transcript from alignment at sc0000388:52181..52748

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021518 ID=TCONS_00021518|Name=TCONS_00021518|organism=Clytia hemisphaerica|type=transcript|length=568bp|location=Sequence derived from alignment at sc0000388:52181..52748 (Clytia hemisphaerica)
ATGTATGGTATTAGTAGAGGAAGAGGAAAATTGCAGTGCCATAGAACTTT
GTATACCCGCACTGTCCACTGAGAATACTAATCTTCAAATATTGaaagaa
tgaaaatgaaaaatcttgcAGAGGGCTAAAAAGTTTCCTTCATTGATAtt
gtcagaatttttcaaaacaatctttgttttttttaaaaactgtaTGGAAA
TACTTTGAAACATGAtatgaatatgtttttattgacCCAAAATGTTGAAA
GGTTGCAAAAAATTTTGCGCAGCAAATatgagattctaaaatggtagagt
agagcacCGAGCAGAGCTGCatggtttatttgatttgaaattttgctgct
ttgaatggtcaggcatttgatggctatgcatgtttTTGAAGGCTCCCATT
TCATTGAATTGACTATTAAACTCAACCACCACCACCCCCACCCAAAAAAA
AAAGGACCAGAGATTTCTCAAACCAGAATACTTGTTTCCCCTTTTCCGAC
TAAGTTTTCGTACCATCAGAGCTTTACACTTCTAAACTAGGATGTTACAT
TTGAAAATGAtacaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012064XLOC_012064Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021518-exon-sc0000388-1491911889:52181..52748TCONS_00021518-exon-sc0000388-1491911889:52181..52748Clytia hemisphaericaexon
TCONS_00021518-exon-sc0000388-1510915933:52181..52748TCONS_00021518-exon-sc0000388-1510915933:52181..52748Clytia hemisphaericaexon
TCONS_00021518-exon-sc0000388-1575043694:52181..52748TCONS_00021518-exon-sc0000388-1575043694:52181..52748Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000388supercontigsc0000388:52181..52748 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.296972	0.289106	1.6784	1.64794	0.133269	0.105311	0.255482	0	0.334182	0.412608	0.300365	0.131632	0.262898	0.277501	0.168346	0.240882	0.148373	0	0.210104	0.219858	0.288168	0.279631	0	0.20682	0.106103	0.662859	0.542028	0.145984	0	0.223507
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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