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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021510 ID=TCONS_00021510|Name=TCONS_00021510|organism=Clytia hemisphaerica|type=transcript|length=1322bpRun BLAST on NCBI protein sequence of TCONS_00021510-protein >TCONS_00021510-protein ID=TCONS_00021510-protein|Name=TCONS_00021510-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp MSTFPSTTYQPLLSHTEDEEEEELSELPPTYVTTRGPEKNGRWNHIENLDRun BLAST on NCBI transcript from alignment at sc0000388:104079..111056- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021510 ID=TCONS_00021510|Name=TCONS_00021510|organism=Clytia hemisphaerica|type=transcript|length=6978bp|location=Sequence derived from alignment at sc0000388:104079..111056- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000388:104079..111056- >TCONS_00021510 ID=TCONS_00021510|Name=TCONS_00021510|organism=Clytia hemisphaerica|type=CDS|length=14580bp|location=Sequence derived from alignment at sc0000388:104079..111056- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00021510 vs. Swiss-Prot (Human)
Match: ATG9A (Autophagy-related protein 9A OS=Homo sapiens GN=ATG9A PE=1 SV=3) HSP 1 Score: 367.851 bits (943), Expect = 5.219e-118 Identity = 193/380 (50.79%), Postives = 257/380 (67.63%), Query Frame = 3
Query: 234 WNHIENLDDFFTRIYKYHRAQGFLCLLLTNISVLLQYXXXXXXXXXXXXXXDYEILFNDP------HPTY-TKV----------VQWARFQHIPSGFVLCMVVAFLFWIIRLVQVIYDIWKAWELHQFFKQVLCIGDNELQNMTWQDVQHKLVEVQASHQMCIHKKELTELDIHHRILRQKNYLIALQNKGVIDYLFHFPFLGERTFLTEGMKFNLYLILFNGPGAPFEKSWKLKTQYKDISNRSLLAAQLSRRIFMLGVMNFVFCPFILLYQFLYSFFMYAELVKRSPDLFGARKWSLYGRVYLRHFNELDHEFQQRLSRAYDPSKKYINSFMSPVLTIIAKNIAFFAGSILAVMLVLSFYDQDVLTAEHVISFMAILG 1322
W+HIENLD FF+R+Y H+ GF C+L+ I L+Q++F+V F FL C+DY+ILF + HPT KV V AR Q S + +V+A +FWI RL++ IY+I WE+H F+ L I + L TWQ+VQ ++V+ Q HQ+CIHK+ELTELDI+HRILR +NY++AL NK ++ F P LGE F T G+K+N LILF GPG+ F W LK +YK R LA +LS RI +G+ NF+ CP IL++Q LY+FF YAE++KR P GAR WSLYGR YLRHFNEL+HE Q RL+R Y P+ KY+N F+SP+LT++AKN AFFAGSILAV++ L+ YD+DVL EHV++ + +LG
Sbjct: 37 WHHIENLDLFFSRVYNLHQKNGFTCMLIGEIFELMQFLFVVAFTTFLVSCVDYDILFANKMVNHSLHPTEPVKVTLPDAFLPAQVCSARIQENGS-LITILVIAGVFWIHRLIKFIYNICCYWEIHSFYLHALRIPMSALPYCTWQEVQARIVQTQKEHQICIHKRELTELDIYHRILRFQNYMVALVNKSLLPLRFRLPGLGEAVFFTRGLKYNFELILFWGPGSLFLNEWSLKAEYKRGGQRLELAQRLSNRILWIGIANFLLCPLILIWQILYAFFSYAEVLKREPGALGARCWSLYGRCYLRHFNELEHELQSRLNRGYKPASKYMNCFLSPLLTLLAKNGAFFAGSILAVLIALTIYDEDVLAVEHVLTTVTLLG 415 The following BLAST results are available for this feature:
BLAST of TCONS_00021510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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