TCONS_00021508 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00021508
Unique Name	TCONS_00021508
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1322

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000388:104079..111056-

transcript sequence

>TCONS_00021508 ID=TCONS_00021508|Name=TCONS_00021508|organism=Clytia hemisphaerica|type=transcript|length=1322bp
TTAAAGTGATACAAATTAATAGAATACAGAATCAGCCATCATGGATTAAT
GGTTCAAAATAATTGGAATAAAGTTTATTGTAACATAACCCACACCATCC
CACCATCATGTCAACGTTCCCATCAACAACTTATCAACCGCTTCTCTCTC
ACactgaagatgaagaagaagaagaactctCTGAATTACCACCAACATAT
GTCACAACACGTGGACCTGAGAAGAACGGTCGATGGAATCATATAGAAAA
TTTGGATGACTTTTTCACAAGGATATACAAGTATCACAGGGCACAAGGAT
TTTTATGCCTTTTGCTGACCAATATTTCAGTTTTACTGcaatatattttc
attgttaTCTTTGCAATATTTTTGGCAATTTGCATTGATTATGAAATCCT
CTTCAATGATCCTCATCCAACATACACCAAAGTTGTTCAATGGGCAAGGT
TCCAACATATTCCAAGTGGCTTTGTCCTATGCATGGTtgttgctttttta
ttttggattATCCGATTGGTTCAGGTTATTTATGATATTTGGAAAGCATG
GGAACTTCATCAGTTCTTCAAACAAGTTTTATGTATTGGTGATAATGAGC
TACAAAATATGACGTGGCAAGATGTTCAACATAAATTAGTTGAAGTTCAA
GCTTCACATCAAATGTGTATTCATAAAAAGGAATTGACTGAACTAGATAT
CCATCATAGAATCTTGCGACAAAAGAATTATTTGATTGCGCTTCAGAACA
AAGGAGTCATTGATTATCTATTCCACTTCCCATTCCTTGGTGAAAGGACG
TTCTTGACAGAGGGAATGAAATTCAATTTATATTTAATCTTATTCAATGG
ACCTGGTGCACCTTTCGAAAAAAGTTGGAAACTCAAAACTCAATATAAAG
ATATCAGTAACAGgtCTCTATTAGCTGCACAACTATCGAGGCGTATCTTC
ATGCTTGGTGTAATGAATTTCGTTTTTTGTCCATTCATTTTGCTGTACCA
ATTCCTCTATTCATTCTTCATGTATGCTGAGTTGGTGAAAAGATCTCCAG
ATCTCTTTGGTGCAAGGAAATGGTCACTATATGGTCGTGTATATCTTCGC
CATTTCAACGAGCTCGATCATGAATTTCAACAACGATTAAGTCGAGCATA
CGATCCATCTAAGAAATACATCAATTCGTTTATGTCACCTGTTCTTACAA
TCATTGCTAAaaACATTGCTTTTTTTGCTGGCTCAATTTTGGCAGTTATG
TTAGTATTGTCATTTTATGATCAAGACGTTTTAACAGCCGAACATGTTAT
TTCATTCATGGCTATACTAGGT

Run BLAST on NCBI

transcript from alignment at sc0000388:104079..111056-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00021508 ID=TCONS_00021508|Name=TCONS_00021508|organism=Clytia hemisphaerica|type=transcript|length=6978bp|location=Sequence derived from alignment at sc0000388:104079..111056- (Clytia hemisphaerica)
TTAAAGTGATACAAATTAATAGAATACAGAATCAGCCATCATGGATTAAT
GGTTCAAAATAATTGGAATAAAGTTTATTGTAACATAACCCACACCATCC
CACCATCATGTCAACGTTCCCATCAACAACTTATCAACCGCTTCTCTCTC
ACACTGAAGATGAAGAAGAAGAAGAACTCTCTGAATTACCACCAACATAT
GTCACAACACGTGGACCTGAGAAGAACGGTATAAATAATATTATTAATAA
CAACAGATATAGAAATTCTTTAGATTACTTTATTGGAACTTATTTTTGCG
GGAACTAATTTTCGCGGTCGTAAAAAAATATCCAAAAAATTGCATTTGGT
AGCTTTTAATTTTCGCGTTTTTTTTTTCATTCTGGAATTTTCGTGGGTTT
TAATTTTCAGTTTTGCCCTTTTTTGGACAAATTTCTTTCATTTTCGTATG
AATTTTTTTAAATTTTTTGATAAAATATTTGGAAAAAATTGTATTTTGCG
GGAATTAATTTTTCCCGGTTTTACTTCTCTAAATTTTTCACTGGCTCAAA
TTTTTGCGATTTTGACAAAAAAACACAAAAAACGCTAAAATTAATTCCTG
CAAAAATTAGTTCCAATAAGGTATACATATTTCTACCAATTTATTTTATA
ACATAGTGCAGTCTAAATTTGAAAAAAAATTTCATCGTATTCTGGATTGA
ACATTTATAATTCATTTTGCTTTTTCTTATATTCTAGGTCGATGGAATCA
TATAGAAAATTTGGATGACTTTTTCACAAGGATATACAAGTATCACAGGG
CACAAGGATTTTTATGCCTTTTGCTGACCAATATTTCAGTTTTACTGTAA
GTTGAAAAAAATTAAATTACATATATTCTTGTTAAATATAGGATACATTA
TGTCAATTTTTTCAACTATTTGTTTTGTTTAAAGAAGAAATATACACATT
GTAAAGTTTAAAAGATATCACCAAAATCAAGGTTTTCATGCTTACTTTTT
AGGCAATATATTTTCATTGTTATCTTTGCAATATTTTTGGCAATTTGCAT
TGATTATGAAATCCTCTTCAATGATCCTCATCCAACATACACCAAAGTTG
TTCAATGGGCAAGGTTCCAACAGTAAGTGTCTTGATAGAATAATTTTTAG
ATAATGAGGTTGATTTTAAGTTTAGTTTGTTTTTTAAAGCAAAAAATTTA
GAAAAAAAATAAATTTTCAAAGGCAGTTGTTATGTCCCCCTTGTATGGTA
TTATTTCTTTATTTACTAACTGAAGGGAAACAATCTTTAAATCATTGTTT
TTATCTATAAAAAATGTTTCTTGATTTTGTAAAATATTCTTAGGAAAACA
ATAGTGTGAAAAGTAAACTTACATAATAATGTTTTTTTTCTATCTCAGTA
TTCCAAGTGGCTTTGTCCTATGCATGGTTGTTGCTTTTTTATTTTGGATT
ATCCGATTGGTTCAGGTTATTTATGATATTTGGAAAGCATGGGAACTTCA
TCAGTTCTTCAAACAAGTTTTATGTATTGGTGATGTGAGTTTCTTTTTTA
CATATTTTTTATTTTTATTAGAATATTATTATTAGAAGGTTGTGATAAAA
AAACTTTATATTCGACCCATTTTATCTGGGTCAGCATAGTCATAGCGAGA
TACCCTGCAAAATTTATGGATGAGAGCGGTTTTTAAGACACTGTAATTAT
TGTCTTTGTTATATCAAAAGATAATGAATATATCTTAAACGTCTGCACTC
CCTCATAAATTTTGCAGGGTATCTCGCTTCGCCTATGGTCAGCCTGTCTA
ACAAAGCTAGGTCAACTTTATACCTTTTTCATATTAATCAGAGTAGACAA
AAATTCAGACATGAATATAATATCCAACCTTAATACCCATTTTTAAGATC
TTATAAATTGAATTTGCGATCTCTTTTTAGAATGAGCTACAAAATATGAC
GTGGCAAGATGTTCAACATAAATTAGTTGAAGTTCAAGCTTCACATCAAA
TGTGTATTCATAAAAAGGAATTGACTGAACTAGGTATTATAAGCTTTCTA
TAAAAGATTTTGATTTTTTGATGGATTCACTTTTTTTATATAAGAATTGT
GTTTTTCGTTTCATATTTATCATGGACATTCTTAACTACTTGGGGCTAAT
CATCCTTAAAAAAAAATCGTAGGCTAGGATCCAAATTCAACTTTATATTC
AGTTATTTAGCAAGAAACAGCATCTGGGGAAGGGGTATTTAAAGATAAAA
AATGTTTAAGAATATCTTTTCTCGGGTTGAGTCGTCAAATTGACGGTGAT
ATTCTTAGCATGTTCATATTTTTTTGACCAATTTCATCATGAATAGTGTT
AAATTATTCTTCAATGATGAATTATTTTACAACTAATATTCAAGACCAAA
TTTTCAGATTTTTGTCCTCGTGGTTATAGCTTTTGTAATGAGAAGTTGAA
CCTATTAGTTTAAAAAATAACAAGTCTGTTACTTTCCTGTGATGGTTGAC
CCTGTTGAGTGGTTTATCTTTATCCTTCCTTTTTAGATATCCATCATAGA
ATCTTGCGACAAAAGAATTATTTGATTGCGCTTCAGAACAAAGGAGTCAT
TGATTATCTATTCCACTTCCCATTCCTTGGTGAAAGGTAAACAGAATTTT
GGTGCCACAAATAGAAATTACTGAAAAATGGGTTCTTACACGGTCCTTTC
TCTTGTGCTGAAATAAAGAAAACTTGTAACTTGAAGAAACACTTTTATTT
ATTTTCAATTTTAATTTTAAACTATTTAGTAATAGCAATGAGGCTCAAAA
TGCTGAAAAAAGAACAATTTGAAGCTCAAAGTACCAAATGATAAGAAAAA
CTGAGCCCTCGAATATTTACTGGCTGTTTATGAAAAGAGTTTTTAGATTA
GAGGACTTAAATAAACTGTTTCCTTTTGTTTGTAGGACGTTCTTGACAGA
GGGAATGAAATTCAATTTATATTTAATCTTATTCAATGGACCTGGTGCAC
CTTTCGAAAAAAGTTGGAAACTCAAAACTCAATATAAAGATATCAGTAAC
AGGTAATTCTGTTTTAACTACTTTTCTATACCACTGTAGTTAAAAGGTGT
TTTATGATATGAATTTTCTTTATTCTTCTGATTACTGATCTTCAAATTTA
TGATGACTATGGCCTTNTTCAAACAAGTTTTATGTATTGGTGATGTGAGT
TTCTTTTTTACATATTTTTTATTTTTATTAGAATATTATTATTAGAAGGT
TGTGATAAAAAAACTTTATATTCGACCCATTTTATCTGGGTCAGCATAGT
CATAGCGAGATACCCTGCAAAATTTATGGATGAGAGCGGTTTTTAAGACA
CTGTAATTATTGTCTTTGTTATATCAAAAGATAATGAATATATCTTAAAC
GTCTGCACTCCCTCATAAATTTTGCAGGGTATCTCGCTTCGCCTATGGTC
AGCCTGTCTAACAAAGCTAGGTCAACTTTATACCTTTTTCATATTAATCA
GAGTAGACAAAAATTCAGACATGAATATAATATCCAACCTTAATACCCAT
TTTTAAGATCTTATAAATTGAATTTGCGATCTCTTTTTAGAATGAGCTAC
AAAATATGACGTGGCAAGATGTTCAACATAAATTAGTTGAAGTTCAAGCT
TCACATCAAATGTGTATTCATAAAAAGGAATTGACTGAACTAGGTATTAT
AAGCTTTCTATAAAAGATTTTGATTTTTTGATGGATTCACTTTTTTTATA
TAAGAATTGTGTTTTTCGTTTCATATTTATCATGGACATTCTTAACTACT
TGGGGCTAATCATCCTTAAAAAAAAATCGTAGGCTAGGATCCAAATTCAA
CTTTATATTCAGTTATTTAGCAAGAAACAGCATCTGGGGAAGGGGTATTT
AAAGATAAAAAATGTTTAAGAATATCTTTTCTCGGGTTGAGTCGTCAAAT
TGACGGTGATATTCTTAGCATGTTCATATTTTTTTGACCAATTTCATCAT
GAATAGTGTTAAATTATTCTTCAATGATGAATTATTTTACAACTAATATT
CAAGACCAAATTTTCAGATTTTTGTCCTCGTGGTTATAGCTTTTGTAATG
AGAAGTTGAACCTATTAGTTTAAAAAATAACAAGTCTGTTACTTTCCTGT
GATGGTTGACCCTGTTGAGTGGTTTATCTTTATCCTTCCTTTTTAGATAT
CCATCATAGAATCTTGCGACAAAAGAATTATTTGATTGCGCTTCAGAACA
AAGGAGTCATTGATTATCTATTCCACTTCCCATTCCTTGGTGAAAGGTAA
ACAGAATTTTGGTGCCACAAATAGAAATTACTGAAAAATGGGTTCTTACA
CGGTCCTTTCTCTTGTGCTGAAATAAAGAAAACTTGTAACTTGAAGAAAC
ACTTTTATTTATTTTCAATTTTAATTTTAAACTATTTAGTAATAGCAATG
AGGCTCAAAATGCTGAAAAAAGAACAATTTGAAGCTCAAAGTACCAAATG
ATAAGAAAAACTGAGCCCTCGAATATTTACTGGCTGTTTATGAAAAGAGT
TTTTAGATTAGAGGACTTAAATAAACTGTTTCCTTTTGTTTGTAGGACGT
TCTTGACAGAGGGAATGAAATTCAATTTATATTTAATCTTATTCAATGGA
CCTGGTGCACCTTTCGAAAAAAGTTGGAAACTCAAAACTCAATATAAAGA
TATCAGTAACAGGTAATTTTGTTTTAACTAGTTTTTTTATACCACTGTAG
TTAAGAGGTGTTGTACATGATATGAATTTTCTTTATTCTTCTGATTACTG
ATCTTCAAATTTATGATGACTATGGCCTCCTACTAAGAATCTTTGAAATG
AGAAGTTTTTTTGTGAAATTATAGATCCCTAATTCACAAATTATTATTAT
TATTTTTTTTTAGGTCTCTATTAGCTGCACAGTAAGTTTAGCTTTAATTG
ACTCTCTTGAAAAAGAAAAAATTACTCCCACTCTACACAACCTATGTCTG
TTAAGTCTGGTTGTACACAACCTATGTCTGTTAAGTCTGGTTGATACAGT
TGTGGATTTCAGAATAAATATGAATGAGAGTTCATTTCCTTACATACAGT
ATATGGATTATGAAACACTCTTTATCATAAATTTTGAACCCCTCCTTATC
CCTTAATAAGCTATCTTTGTCAATTTGCATTATATTATTATACGTCAGAA
TTTTATAAGGACTAAATAAAGTAAGCAGCATTTGTATTAAAATTATTTGA
TTATTTTTCTGTTTAGACTATCGAGGCGTATCTTCATGCTTGGTGTAATG
AATTTCGTTTTTTGTCCATTCATTTTGCTGTACCAATTCCTCTATTCATT
CTTCATGTATGCTGAGGTAAATGATATACCATAATTTACGCCTTATCTTG
TGAGCTGAATAAATTAAAAATATTCAGCCGGAAATACAAATGTAGGGATA
TGAGAATTTGGGTTTTGTGGAACAAAACAAAAGGATACACTATTCTGGAT
CCGCTTATTTCGTCGAATGACTTAGTGGGCTAAGAAGACAATTTTCTGAT
TTTCTGACTCGAACCCTCGCTCCTTCTATGTTCAATTTAGTTCAATGGTT
GGACTGGTTGGCCTAGAGGTTTCTCGCTAACTATGTTCAATAGATCTTGA
CCCTATTTAGCCAATAGCTTCTCACAAAACCAGCGGGTTTTATGCGAATA
AATGCAACGCAATGCAAGTGAAAGTGAGAATTTTGTGTGCGTTTAGGGTG
CAGGATCTACTTTGATTACATTAGATTACCCGTATACTGAATATTGAATT
TGACTACACGTGTGTCAGGTAGTTTGTGTGTTGATTAAAAAACCATACTG
GAATTCCTGCACTTTTACACGGTGTGATAATGTATTTCTTTGCCTTTCAG
TTGGTGAAAAGATCTCCAGATCTCTTTGGTGCAAGGAAATGGTATGTGCC
AAAACAAACACAAGTTTTTAATGGTTACGACAAATGCATGTGTTAATCTT
AAAACAATATATTGTTTTTAACTTTTTTACTTTGGAATAGATGGAATAGT
ATCAGTATAATACAAGGTACGAGGGCTTTTTTAAACAGGTTTCCATTCAA
CTTTGAACAATCAGCAGTACATTTTTTATTTATTTCACAGGTCACTATAT
GGTCGTGTATATCTTCGCCATTTCAACGAGCTCGATCATGAATTTCAACA
ACGATTAAGTCGAGCATACGATCCATCTAAGAAATACATCAATTCGTTTA
TGTCACCTGTTCTTACAATCATTGCTAAGTATGTTCATTGAGGTTAAAGT
TCAACATTCAAAAAAAAAGTTTTGAATTTATCATTTTATTGCTCCTTCAC
GTAGAGCACAGTCTTTGGTGATACAAATCCCCTCCATCAATACTAATTGA
GGTTATTACAATCTTTGAATTCACATGGTAGGACCTACGACTCCTACGGC
TAAAATCGAATCTTCTATTGTAGGATTTGAAGCCACTTATTTCCTTTACA
TAGTTGCACTACACAAGTGATTTTTATAGAAACGCTGGACTGGAAATAAC
ATTTACCTCCATAAAACGAAAAAAAATGTGATTGCGCAGAAAGTTCAATT
CGTCATCCGAAATGCGACGTAAAATTCTAAGACATAACTTTGACTTGTCT
GGGAAGTTGAAACAATAGCTTTTAGCCTTAAAAAACAATTAATGAGATAC
TTTATAATAGGTTTTTATGTGGGTTGCTCGTATGGAAAGAAATGTAGTCG
GATTTTTTACCTCATAGAACTATCAAACTATAGGCTAAATACTCAGATTT
GCCTACAACCCAAACAAAACAATATAATAAACAAAATAATTATAATGATA
TTTTCTCTTTTTTTAGAAACATTGCTTTTTTTGCTGGCTCAATTTTGGCA
GTTATGTTAGTATTGTCATTTTATGATCAAGACGTTTTAACAGCCGAACA
TGTTATTTCATTCATGGCTATACTAGGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012060	XLOC_012060	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000388	supercontig	sc0000388:104079..111056 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.17573	3.70676	4.45729	4.14007	5.37328	3.67707	4.1801	4.30661	3.86128	3.90112	3.77845	3.63548	5.1674	5.32236	3.33042	3.91883	7.27442	9.8903	5.27754	5.27436	9.65415	10.1019	6.39592	7.28514	15.76	15.6537	3.55128	2.32066	5.28041	5.98368

Blast

[Close]

BLAST of TCONS_00021508 vs. Swiss-Prot (Human)
Match: ATG9A (Autophagy-related protein 9A OS=Homo sapiens GN=ATG9A PE=1 SV=3)

HSP 1 Score: 367.851 bits (943), Expect = 5.219e-118
Identity = 193/380 (50.79%), Postives = 257/380 (67.63%), Query Frame = 3

Query:  234 WNHIENLDDFFTRIYKYHRAQGFLCLLLTNISVLLQYXXXXXXXXXXXXXXDYEILFNDP------HPTY-TKV----------VQWARFQHIPSGFVLCMVVAFLFWIIRLVQVIYDIWKAWELHQFFKQVLCIGDNELQNMTWQDVQHKLVEVQASHQMCIHKKELTELDIHHRILRQKNYLIALQNKGVIDYLFHFPFLGERTFLTEGMKFNLYLILFNGPGAPFEKSWKLKTQYKDISNRSLLAAQLSRRIFMLGVMNFVFCPFILLYQFLYSFFMYAELVKRSPDLFGARKWSLYGRVYLRHFNELDHEFQQRLSRAYDPSKKYINSFMSPVLTIIAKNIAFFAGSILAVMLVLSFYDQDVLTAEHVISFMAILG 1322
            W+HIENLD FF+R+Y  H+  GF C+L+  I  L+Q++F+V F  FL  C+DY+ILF +       HPT   KV          V  AR Q   S  +  +V+A +FWI RL++ IY+I   WE+H F+   L I  + L   TWQ+VQ ++V+ Q  HQ+CIHK+ELTELDI+HRILR +NY++AL NK ++   F  P LGE  F T G+K+N  LILF GPG+ F   W LK +YK    R  LA +LS RI  +G+ NF+ CP IL++Q LY+FF YAE++KR P   GAR WSLYGR YLRHFNEL+HE Q RL+R Y P+ KY+N F+SP+LT++AKN AFFAGSILAV++ L+ YD+DVL  EHV++ + +LG
Sbjct:   37 WHHIENLDLFFSRVYNLHQKNGFTCMLIGEIFELMQFLFVVAFTTFLVSCVDYDILFANKMVNHSLHPTEPVKVTLPDAFLPAQVCSARIQENGS-LITILVIAGVFWIHRLIKFIYNICCYWEIHSFYLHALRIPMSALPYCTWQEVQARIVQTQKEHQICIHKRELTELDIYHRILRFQNYMVALVNKSLLPLRFRLPGLGEAVFFTRGLKYNFELILFWGPGSLFLNEWSLKAEYKRGGQRLELAQRLSNRILWIGIANFLLCPLILIWQILYAFFSYAEVLKREPGALGARCWSLYGRCYLRHFNELEHELQSRLNRGYKPASKYMNCFLSPLLTLLAKNGAFFAGSILAVLIALTIYDEDVLAVEHVLTTVTLLG 415

The following BLAST results are available for this feature:

BLAST of TCONS_00021508 vs. Swiss-Prot (Human)

BLAST of TCONS_00021508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ATG9A	5.219e-118	50.79	Autophagy-related protein 9A OS=Homo sapiens GN=AT...	[more]

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TCONS_00021508 (transcript) - C. hemisphaerica