TCONS_00021496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021496
Unique NameTCONS_00021496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021496 ID=TCONS_00021496|Name=TCONS_00021496|organism=Clytia hemisphaerica|type=transcript|length=406bp
GAACTTTGCAATAAATAAACTGCAACATTGTAAAATTGCGTTGGCTTTGT
GTTGACAGTAGATTCAACTTCTATTCCATCAATCTCTATAAAATATCTGT
AATGACCATTCGAGATATAGTATTGAGCAACTTTGATGTTATAAACAGTA
TTTAGGACAAGGTTGTATTTAAAGTAAGAATGGTCCCCATTATTGTTGAC
TGAGCTTGAAATCTGAAGCATGCTACCTTTCATGATCAAGATCGGGACTC
GGCTTCCGTGATTTAGGAGTGCACTTCCGTTAGTAAAGTGGAGAATGCCT
TTCCATTGGTTCATTATGAAACTATTGAATTTGATGCTCAGCGTTAGTTC
CCATTCTGGAGACTGGACAGGAATGTATTTGATGAGTCCACCAGAAAATG
CTTTCA
Run BLAST on NCBI

transcript from alignment at sc0000388:213838..224157+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021496 ID=TCONS_00021496|Name=TCONS_00021496|organism=Clytia hemisphaerica|type=transcript|length=10320bp|location=Sequence derived from alignment at sc0000388:213838..224157+ (Clytia hemisphaerica)
GAACTTTGCAATATATAAACTGCAACATTGTAAAATTGCATTGGGTTTGT
GTTGACAGTAGATTTAACTTCTATTCCATCAATCTCTATAAAATATCTGT
AACGACCATTGGAGATATAATATTGAGCAACTTTGATGTTATAAACAGTA
TTTAGGACAAGGTTGTATTTCAAGTAATAATGGTCCCAATTATTGTTGAC
TGAGCTTGAAATCTGAAGCATACTACCTTTCATGACCAAGAGCGGGACTC
GGTTTCCATGATTTAAGTGTGCACTTCCGTCAGTAAAGCGGAGAATACCT
TTCCATAGGTTTGTTATGAAACTATTGAATTTGATGCTCAGCGTTAGTTC
CCATTCTGGAGACTGGACAGGAATGTATTTGATAAGTCCACCAGAAAATG
CTTTCTTTtctatgataaaaaaaatcaaaatgaaaatattttgttattaa
GAATAAACTTTCATGAAGTCGAAAAAAATGGCAAATATTACGACatgaac
ttttgaaaaaatgagaaaagattTGCATGATAAGGCTGATTTGAATCGGT
TAGAAAAGTCGGCCCCCCGCTTGTttatttctcgattttttttccaaccc
cctggaccttattaggaccccctcgtttattaatttttgaaaaaattccc
agctaccaaaaggaaagttccttgttttacactataaaaagcctaaattt
agtcccTATTGACCCTTTTTTAGGGTTTTTGAAGGTCTATTTCCTAgccc
cccccggtaattaggccccccgtttatttgatttgaaaaaaatcttacca
ACCCTcctgtttattcgaacccccctgTTTAATTGGCACCTATAAAGAGT
AACGTATTTGGTCGTTTTGGTCATTTAGTCCATATTGACCTTTTTTAGGG
TTTTTGAAGGTCTATTTCCCagccccccggtaattaggccccccgtttat
ttaatttgaaaaaaatctttccaacCCTcctgtttattcgaacccccctg
TTTAATTTGCACCTATAAAGAGTAACATATTTGGTCGTTTTGGGGCTACA
TAAATAGTATTTCGAACTTATAGTTCACTATACTGTGTAAGATACGTaca
tggtctgtaaaatatgaACAGTGCAAGAattttgtgcactaactcctaTC
TCAGAGTCAATAGCTTTCAGTTGTGGAAATTCCAAGGCGAAAGGAAGGAC
TTCTAAAACCTGAGTTCcaagagaaaattttggatggtCTATTAAATACC
aaactagccataattttcattaaagtgccaccgcagaagaacgatcaaat
aagttgttgaatttggaaagaaatgttactgatagccgtTACTTTTGTTN
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CGCACTCTTATCTTTCTGGGTAATTTTGGCCCATAAAATACCAACCTTAT
AGGTGGCTGAACTAAAATCTAGTAGATAATGTTTCCATAGCATCTTCTAC
TACTGGTAAAAATTCCAAGTCATTGGTTATTGTAGATCTGGATAATTCAA
GCGAAAGCCTCAAGCATGattaaagaaagaaatgatAGTTAAGAATATGC
ATGCATTTTCATATATttgattttaaagaaattttcgcgagtctaaacat
ttgcaaatttttcttttgagaattttaaaagaCTTTACACCTAAAAGAGC
ACATTGGGAAACTTATAATGCTGGCACACACAAACGGATTATTCGTGTTC
CGTGACTCAAAATACTACCCACGCTTTTGTAGAGGTTTTATTTACTTACC
CTTGATGTAAATAATTGGTTTCATACCATGGAAATTCTCCGGCTGTCTTT
TCTAAAATAGATAAATAATAATCATAATCGTAATCATAATTTAGAGTact
aaaaaatataatatccaAGCAAATTCTGATTCTCTGCGCATGGGACGTAT
TtactttaaagtcgaaaaagttttcaaagaaaataataacatcTGACGAT
CATATGTGTAGAAATTTTATCACGCATGTATCAAtttaatcactgtagaa
agaatcaaagatgaagagcaaatattaaccgtattaatgtctagcagact
gtattcATTGATGTTTACTATCGAATTCCCCAGAAGCTTCaggtgtaatt
gaaatgagcttctttcaaaagaaatcgttTACATGATTCCTAAATGTATA
GCAGCAGGTCCATAGCAACCGGGAGGGGGGCACAGGGgcatttcgaaaaa
aaaaaagttggtagctttgaaaaatcttgtatTAATGGCTTCATTTTGAA
CATAATCCTTTAATAAGATGCGTTTTTCAGCAATATAGACACCTTAAATT
GCGGAATTTTCTCCCTCTGGCCAAACCATGGATGGCTGGCCCTCGGTTTA
TATTTCTCACTTTGccccctcaaaatgaaaatgattccTACGAGCCTGAC
AGTAATTACTTAACTATCAATTATGGTAATATTACTTCAATGGAATAGAA
ACAATAGACAGAATAGCTTTCGCCTtcgttttaaagcaaaaaaacaacaa
taacgCGGTGTTGATTGCTTTGTCTGAACAAAATAGGTCAGATCGTCACA
TGCGCAATGTCCTTTAAGTGCAGAGCGTGGTATATGCTgtatgatctgtt
atgagattaacaaaaaaattgattgaaataaaatctacaaTACACTTGAA
TTGCCTGGTACTGtagtttatttttcaatatttcgcTCAAttcttttcga
attttcttgtaCACTTTGTGATTCTAggtattataaaaataaatattttc
gaGTNTGCTAGATTCTAGGTATTTCTTTCACTAGATTATTAAATGATTat
gaaaacaaatattttcgagtcctaattaaaaaaacagctccgttatcagt
aaattttgaaattttgttttattatgaACTCTCAGTTGGCTATAAGGGAC
ATGAAAGAATTTCAAGCGGCCGAATCACTGAGAGAGGGGTTCGTTCAACT
TACCTGACATTTATTGGCAGCTTCAAAGCTAGGAATTGCCAAAATTAGAA
GGAAACATAATTCCTTCACATGCAAtctcatttcaaatttttttcctaTC
TGAAGGAACTAGAATTTCTTATTGTATCAATTCTTAAGcctctttttaaa
caaaaataaaactgaTGCAATGGTTATTCATGAATATCTTTAGGTTTAGA
TTCAATTATACAAATGTTGATTAATCAATATTAATGAAATGCGTTGTCAT
GTCACAATTCAAAACATCCCCAAAACaccttttttataggaatatccaat
atttttgaagccttcagatgttcttaactttttgagtttcaagcagccta
aaaatgtttttaacgtgttcttattgaagtcaatttctgagcattttacc
cattttccaaagaaattgggTGGTTAGGAGTCTACCCTCTGTGCTACTCT
TCTTCAACGTCCGAGACCTCTCCCAACTCGACCAAGAAATAGCTCAAAAA
CAACACCAAGACCTTCAACTtgaaaaactaaaacaaaataaacacttgct
CAATATCGCTCACCTTAATACTCAGTCGATGGTCTCTACATTTGACGAGT
TTATGCTTTTTGTTGATAGTCATGACCCGACCACTGCTTTCTCTACCAAA
ATTGGTTAAAAGACAACCCTTTCCTACTCGATTATGTAAAGATCGATGGG
TACGAAATGCACTTCCATAACCGAGACAATAAGCGTGGTGGTGGATTTAG
ATTATATATCAAAGACAACATTAAGCACAAACTACGCAAGGACATAGTCA
ACATCAACCCAGCTCTCGAACACCTATGGGTTGAAatcgagagaaaaaaa
aacaaacactcAAAACTTGCTCTCATGCGTCGCCTACCAGGCGTACTTCA
CGCTCCAAGAAAAAACAGAGGGCTTGAAAGCTTTGAGCGCATTATTGGAA
ATGCTACTCTAGATTGGACTGATAATGTTGTGATAACTGGTGATTTGAAT
GTCGACCGTGTATCAAACTCTCAATTCAAAGACTCTTACTTTTAAACCCT
TCATTCATTCAACCTAACCCAACATATCAACTCTCCATCTCACAAAGGAG
TATCCCTCATGGATCACATCTCAACGAACTCCTCGTGCAAAGTGAAGTTC
TGTAACGTCCTTCCAACACCGGAAATGAGCGACCACGATGCTGTATACGC
CTGTATGAACACCCGTGTTGCGAGATTTAAACCTCGGCATAAGATAATCC
GTGACATGAGAAACTTTGATTTACCTTCGTATGTTGCTGATACCGCCACC
GTTCCTTTCTACCAATATTCAACCCTCCGAATTAAACAATCACTACATTT
CCACAGCTCCTAGAATCCTTGGATCACAGCCAACCTCTATCGAGGAAATC
CAGCTCCTTCTTCAAGATCTTGCTACAGATGTCGAGCATGAATTCGAATT
TCAACCCGTCACATGTGAACAAGTagtcaaagaaatcaaaaatcttcgAA
CTGACTGCTCTTCTGGATACGACAATCTTCCAGTTTGACTCGTCAAAACT
ATTGCTGATCATCTCGCATCTCAACTCACGCATATAATCAACACAGGTAT
CGCCGAAAACACCTTTCATCAACAGTGGCAAATCGGCAAAGTAACACCTA
TTCTGAAAACAGAACAATCCACCACTCCAGATCAATTCAGACCTGTTACC
GTGCTACCCATTCTCTCCAAACGTTTTGAACGTTTAATGGCAAAACAAAT
CGTAGAATACATCGACCAACATTAGATATTTAAGCAAACTCAATCTAGCT
TTGGCAAACGTCACTCGACCGAAACGTTGTTTATGAAAATTCGAGATGAT
ATCGTTGGTGCAATGAGCAAAGGGGAAATCACACTTGCAGGATTTCTCGA
TTATTCGAAAGCCTTCGACACGGTTGATTATAAGACACTTATAACCAAAC
TACGAAAAATCGGCTACTCCGACAAGGCCGCGTTGCTCATGTTATCATAC
CTCGGCGATCGCAAGCAATTTGTTCAGGGCGACGACAAGCAGTCTGAACA
AGGCACATTTCAGTTTGGTGTACCGCAAGGCTCCATCCTCGGACCGACAT
TGTTTAATCTTTACACCGTGGACCTACAAGACAACGTCAAAGGTGGTAGt
accaaccaatatgctgacgATACTACAAATTACAAACATTGAAGACTAAA
AATATACCAGACGCACTCATCAAAATGATACAACGCCTAGATCAACTCAA
AGATTGTTCCACCGAAAACAATCTTGTGTTcaataacaaaaagagaaaga
tTATGCTCTTGTAGACTTTTAGAAGGGGAAAGCTGCACGATCTCGCCAAG
CCAACCCGTCCGAATTTTCATATCCGTCACACATACCAATTGATCGAAAG
AATTACCGTGTATAAGCTGATTGGTGTTCAGTTCGACGAAAACTTGAACT
TGGAGACCCATGTCAACAAGCTTTTTCAATCGGTATATGCAAAGCTATAT
GTTCTTCGATACCTTCGTCGCACTGCATCGTATCGCTTACGTAAGCAACT
TGCAGAAGCACTATTGTTACCCAGGATCAACTATTGTTACTCGTTATTCT
AGAACCTTGCGCAATATCAATTCAAAAAACTTGATAAGCTTCTATGTCGA
ATTGCATCCTTTGTAACGTTAAAGTATTCAACAACTGAGGACGTAATGAA
CCTTGGCTGGTTATCAATGCAACAACGGGTTGAATTCGAACTCTTAAAAC
TTCCCCACAAGAAGATTCATCTGGAGGATTTCCCATCATACCTAAATGGC
TTCCATCTGAGAGCTGCTGGTAGACCAACTCGTAATGTTGAAGAGATTCA
TTCTTATTATGTATGTAATGTATCTGAAAAATTGTTTATTGACAAGGCAA
GTTCGCTTTTTGAATGACATCCCAAAGGGTATTCGGGAAGAAGTTGATTA
TATTAAATAcgtaattctttaaaaaatatttattagatGTTAGTCTTGCA
ATATATATTACGCAAGATTAGTTTATGACACTCGACAAATTCGACATTTT
CACAATCATTATTACTTGGAAGACTTCTACAATAGTAATTCAATATCTCC
ACAATACTCCAATCCAAGTTGCAATTTACTTTTTagttttgtctattttc
tttcAAGTATCTAGTCTCTAAAGTTGTCAATaacataatattttattttc
tatatttcaaatCTAAATTATTATATCTCTAGTACTTCATGTTTAGccat
tttttcaagcaattcaGTTTTTTCCAATACCTTTCGACACATTTGATATA
TTCCTCTCTTTGGAACTACTAGCTTTGAATACTGTAACCTTAGCCGATCA
CGATCCcacttcttttttgtttttgagtttcTCGAGCCTATTTTCAAGCA
TTAATCCCACATTTCAACAACACTTTTGCTCTTCTTTTGTTctgacaaat
attgtttaaaataaatttctattttattgatttttaatccATTTCATATC
TCTCAATTAAATTCTGATCACGGCTGTCTACCATACTTAGtctctaccat
tttagaatttCTCTGAGTTTTCGAGCCTTTGCCTGCAGAGTTATATCTTT
CAGAAGTGAATAGGCCTCACTGAAGAGATATAAAGCTCTGTATTCAACCT
TGCCCAGTTAGGGCAGTTGTACAGTTTTATCTAAGCTTCAATCATCAATT
TGATCCCAATCGAGCAAATAAACATTTTAGTCGTaggtatatttttttca
aattgaaaattatttttttatatattttatattttatatNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgagg
gcgtgccaaataagaaaaaataacccatcgtgcgattagagcagaaaatt
ataaaagcagaaatatattcttaaaaaaaattgaaaattttcatgatggc
aaaattcttaatattttggctattttcatcataaacattcttataaagtg
ttcttataaaaaaaaattccctgtTTTCTTTACACCTACATGCTGTTAGA
TCCGaataagaaaaattacaaaaaattgaCGAATTTTAAATTGGTGACGT
CGCAATCTGCTTTTGACCTTTGCAACAAATAAACTGCAACATTGTAAAAT
TGCGTTGGCTTTGTGTTGACAGTAGATTCAACTTCTATTCCATCAATCTC
TATAAAATATCTGTAATGACCATTCGAGATATAGTATTGAGCAACTTTGA
TGTTATAAACAGTATTTAGGACAAGGTTGTATTTAAAGTAAGAATGGTCC
CCATTATTGTTGACTGAGCTTGAAATCTGAAGCATGCTACCTTTCATGAT
CAAGATCGGGACTCGGCTTCCGTGATTTAGGAGTGCACTTCCGTTAGTAA
AGTGGAGAATGCCTTTCCATTGGTTCATTATGAAACTATTGAATTTGATG
CTCAGCGTTAGTTCCCATTCTGGAGACTGGACAGGAATGTATTTGATGAG
TCCACCAGAAAATGCTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012055XLOC_012055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021496-exon-sc0000388-1491911889:213838..213849TCONS_00021496-exon-sc0000388-1491911889:213838..213849Clytia hemisphaericaexon
TCONS_00021496-exon-sc0000388-1510915933:213838..213849TCONS_00021496-exon-sc0000388-1510915933:213838..213849Clytia hemisphaericaexon
TCONS_00021496-exon-sc0000388-1575043694:213838..213849TCONS_00021496-exon-sc0000388-1575043694:213838..213849Clytia hemisphaericaexon
TCONS_00021496-exon-sc0000388-1491911889:223764..224157TCONS_00021496-exon-sc0000388-1491911889:223764..224157Clytia hemisphaericaexon
TCONS_00021496-exon-sc0000388-1510915933:223764..224157TCONS_00021496-exon-sc0000388-1510915933:223764..224157Clytia hemisphaericaexon
TCONS_00021496-exon-sc0000388-1575043694:223764..224157TCONS_00021496-exon-sc0000388-1575043694:223764..224157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000388supercontigsc0000388:213838..224157 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0645027	0	0	0	0	0	0	0	0	0	0	0.0270285	0.766159	0	0.391764	0	0.0670084	0	0	1.32719	1.42229	0	0.650163	1.123	0	0	0	0.690578	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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