TCONS_00021428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021428
Unique NameTCONS_00021428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021428 ID=TCONS_00021428|Name=TCONS_00021428|organism=Clytia hemisphaerica|type=transcript|length=381bp
AAAAGATGTTGATTCTGTCTTCCATATTTCTACACTGGCCGGACATAATA
AAAGAACCACCTAGCTCAAAGCCACATTCACAAAGCTTGGGCTTTTTTCT
ATTGACATATTCCTTTGAACAGCTACTGCAAGCACCTAGCCCTCTTTTCC
TCCCTTCTGAAGAAGATANATATTCCTTTGAACAGCTACTGCAAGCACCT
AGCCCTCTTTTCCTCCCTTTTGAAGAAGATGCCACAGCAGCAGTGGAGGA
AGAACTAGCCATTATCCAAAATTCAGTCAAAATTCCAAGAAAGTAAGTCC
AAAGTTCTGTCAAGTCCAGCAACGTGTTTGAGTTTAAAATTCCAAGAGAG
TAAGTCCAATGTTCGGTCAAGTCCAGCAACG
Run BLAST on NCBI

protein sequence of TCONS_00021428-protein

>TCONS_00021428-protein ID=TCONS_00021428-protein|Name=TCONS_00021428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
LLDLTEHWTYSLGILNSNTLLDLTELWTYFLGILTEFWIMASSSSTAAVA
SSSKGRKRGLGACSSCSKEYXSSSEGRKRGLGACSSCSKEYVNRKKPKLC
ECGFELGGSFIMSGQCRNMEDRINIF
Run BLAST on NCBI

transcript from alignment at sc0000385:531797..532177

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021428 ID=TCONS_00021428|Name=TCONS_00021428|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at sc0000385:531797..532177 (Clytia hemisphaerica)
CGTTGCTGGACTTGACCGAACATTGGACTTACTCTCTTGGAATTTTAAAC
TCAAACACGTTGCTGGACTTGACAGAACTTTGGACTTACTTTCTTGGAAT
TTTGACTGAATTTTGGATAATGGCTAGTTCTTCCTCCACTGCTGCTGTGG
CATCTTCTTCAAAAGGGAGGAAAAGAGGGCTAGGTGCTTGCAGTAGCTGT
TCAAAGGAATATNTATCTTCTTCAGAAGGGAGGAAAAGAGGGCTAGGTGC
TTGCAGTAGCTGTTCAAAGGAATATGTCAATAGAAAAAAGCCCAAGCTTT
GTGAATGTGGCTTTGAGCTAGGTGGTTCTTTTATTATGTCCGGCCAGTGT
AGAAATATGGAAGACAGAATCAACATCTTTT

Coding sequence (CDS) from alignment at sc0000385:531797..532177

>TCONS_00021428 ID=TCONS_00021428|Name=TCONS_00021428|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0000385:531797..532177 (Clytia hemisphaerica)
TTGCTGGACTTGACCGAACATTGGACTTACTCTCTTGGAATTTTAAACTC
AAACACGTTGCTGGACTTGACAGAACTTTGGACTTACTTTCTTGGAATTT
TGACTGAATTTTGGATAATGGCTAGTTCTTCCTCCACTGCTGCTGTGGCA
TCTTCTTCAAAAGGGAGGAAAAGAGGGCTAGGTGCTTGCAGTAGCTGTTC
AAAGGAATATNTATCTTCTTCAGAAGGGAGGAAAAGAGGGCTAGGTGCTT
GCAGTAGCTGTTCAAAGGAATATGTCAATAGAAAAAAGCCCAAGCTTTGT
GAATGTGGCTTTGAGCTAGGTGGTTCTTTTATTATGTCCGGCCAGTGTAG
AAATATGGAAGACAGAATCAACATCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012013XLOC_012013Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021428-proteinTCONS_00021428-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021428-exon-sc0000385-1491911889:531797..532177TCONS_00021428-exon-sc0000385-1491911889:531797..532177Clytia hemisphaericaexon
TCONS_00021428-exon-sc0000385-1510915933:531797..532177TCONS_00021428-exon-sc0000385-1510915933:531797..532177Clytia hemisphaericaexon
TCONS_00021428-exon-sc0000385-1575043694:531797..532177TCONS_00021428-exon-sc0000385-1575043694:531797..532177Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:531797..532177 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.412532	0.603425	0.233545	0	0.278161	0.219807	0	0.744796	0.173816	0.2153	0.208975	0.137372	0.823086	0.997247	0.117125	0.125693	0.154843	0.158709	0	0	0	0.291824	0	0.215013	1.32875	0.59294	0.282832	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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