TCONS_00021395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021395
Unique NameTCONS_00021395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1015

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021395 ID=TCONS_00021395|Name=TCONS_00021395|organism=Clytia hemisphaerica|type=transcript|length=1015bp
TcgtgtgtttccgtataaaagattacgtcatgaatatcaagaattgatCT
AGCGTATCAAGGAGAATAATTTGAGTACAAATTCATATGGGTTCTTCTTC
ATTgatttcttccttttcttctagCCTACGGAAAGCTTCTCGTTCTTTAG
ACCGTAAACAAGACTTGTAATAAGTATCATTTATATGACTTTCCTCGAGT
AGGTCCACTTGTCCGAAATAACGTGTGATCAAAATAATGATCAAGTTCAA
TTGATGGAGAATGTTATCATTTATCGGTTCCGTAAGTTGGTTACGTATCT
CCATGACTCGCCTACACAAATCACGAATTGTTGAACTTGCGTCTGAAGGT
AAAGGCTTATCGAGGCAAACCAATAAGGAATGTATCCACACGCTTTGATC
GTATGAGAAACCCACCACAttcaaaaacaagaaattatatttcaataatt
tGACCACCATTGGTTGTTTTAGTTTCAACAAAACACTCAATAGCGGTGCA
CTACCTTGTCCTTTGGTACCCTCATTCAACAATTGTCCACTTTCACCTTT
aagacaaaaatcaaaataagtgCCCGTGAAATCTTTCCCATAACAAAAAC
GTCCCCATGATTGCTGTGAACCAACTGGTGGAAGGACCGCTTTGGATAGC
CTACAAAGTGACGAAGGGTCTGTTTTCACACGATTGAATTTCTGTCTTAA
AAAAGCGAAATCCTCTGCTACTTTGAATTGTCTCTCCTCCGTAGGAAACA
CACGAGTCCTATTCAAAGGGTCACGCTTCTTCGCAGGGCTCTTCTTACTT
TCCAACAATGCACTGCTTTTGGGTTGTTCCGCGATAACAACGTCCGGACA
AAGGGCTGCTTCCGCTTGTACGCGTTTAATATAATCGATTCCGGACATTG
GAGGTTTAGTTAGATCATACTCAACCGCGTCATCATCTTCAAAATATCCC
AAGGCTACATCCATTGACATCTTTGTCTTTTATATTGAACTCTGATTTTT
AATCATGGATTCGTT
Run BLAST on NCBI

protein sequence of TCONS_00021395-protein

>TCONS_00021395-protein ID=TCONS_00021395-protein|Name=TCONS_00021395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MSMDVALGYFEDDDAVEYDLTKPPMSGIDYIKRVQAEAALCPDVVIAEQP
KSSALLESKKSPAKKRDPLNRTRVFPTEERQFKVAEDFAFLRQKFNRVKT
DPSSLCRLSKAVLPPVGSQQSWGRFCYGKDFTGTYFDFCLKGESGQLLNE
GTKGQGSAPLLSVLLKLKQPMVVKLLKYNFLFLNVVGFSYDQSVWIHSLL
VCLDKPLPSDASSTIRDLCRRVMEIRNQLTEPINDNILHQLNLIIILITR
YFGQVDLLEESHINDTYYKSCLRSKEREAFRRLEEKEEINEEEPI
Run BLAST on NCBI

transcript from alignment at sc0000385:42888..43902

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021395 ID=TCONS_00021395|Name=TCONS_00021395|organism=Clytia hemisphaerica|type=transcript|length=1015bp|location=Sequence derived from alignment at sc0000385:42888..43902 (Clytia hemisphaerica)
AACGAATCCATGATTAAAAATCAGAGTTCAATATAAAAGACAAAGATGTC
AATGGATGTAGCCTTGGGATATTTTGAAGATGATGACGCGGTTGAGTATG
ATCTAACTAAACCTCCAATGTCCGGAATCGATTATATTAAACGCGTACAA
GCGGAAGCAGCCCTTTGTCCGGACGTTGTTATCGCGGAACAACCCAAAAG
CAGTGCATTGTTGGAAAGTAAGAAGAGCCCTGCGAAGAAGCGTGACCCTT
TGAATAGGACTCGTGTGTTTCCTACGGAGGAGAGACAATTCAAAGTAGCA
GAGGATTTCGCTTTTTTAAGACAGAAATTCAATCGTGTGAAAACAGACCC
TTCGTCACTTTGTAGGCTATCCAAAGCGGTCCTTCCACCAGTTGGTTCAC
AGCAATCATGGGGACGTTTTTGTTATGGGAAAGATTTCACGGGcacttat
tttgatttttgtcttAAAGGTGAAAGTGGACAATTGTTGAATGAGGGTAC
CAAAGGACAAGGTAGTGCACCGCTATTGAGTGTTTTGTTGAAACTAAAAC
AACCAATGGTGGTCaaattattgaaatataatttcttgtttttgaaTGTG
GTGGGTTTCTCATACGATCAAAGCGTGTGGATACATTCCTTATTGGTTTG
CCTCGATAAGCCTTTACCTTCAGACGCAAGTTCAACAATTCGTGATTTGT
GTAGGCGAGTCATGGAGATACGTAACCAACTTACGGAACCGATAAATGAT
AACATTCTCCATCAATTGAACTTGATCATTATTTTGATCACACGTTATTT
CGGACAAGTGGACCTACTCGAGGAAAGTCATATAAATGATACTTATTACA
AGTCTTGTTTACGGTCTAAAGAACGAGAAGCTTTCCGTAGGctagaagaa
aaggaagaaatcAATGAAGAAGAACCCATATGAATTTGTACTCAAATTAT
TCTCCTTGATACGCTAGatcaattcttgatattcatgacgtaatctttta
tacggaaacacacgA

Coding sequence (CDS) from alignment at sc0000385:42888..43902

>TCONS_00021395 ID=TCONS_00021395|Name=TCONS_00021395|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at sc0000385:42888..43902 (Clytia hemisphaerica)
ATGTCAATGGATGTAGCCTTGGGATATTTTGAAGATGATGACGCGGTTGA
GTATGATCTAACTAAACCTCCAATGTCCGGAATCGATTATATTAAACGCG
TACAAGCGGAAGCAGCCCTTTGTCCGGACGTTGTTATCGCGGAACAACCC
AAAAGCAGTGCATTGTTGGAAAGTAAGAAGAGCCCTGCGAAGAAGCGTGA
CCCTTTGAATAGGACTCGTGTGTTTCCTACGGAGGAGAGACAATTCAAAG
TAGCAGAGGATTTCGCTTTTTTAAGACAGAAATTCAATCGTGTGAAAACA
GACCCTTCGTCACTTTGTAGGCTATCCAAAGCGGTCCTTCCACCAGTTGG
TTCACAGCAATCATGGGGACGTTTTTGTTATGGGAAAGATTTCACGGGca
cttattttgatttttgtcttAAAGGTGAAAGTGGACAATTGTTGAATGAG
GGTACCAAAGGACAAGGTAGTGCACCGCTATTGAGTGTTTTGTTGAAACT
AAAACAACCAATGGTGGTCaaattattgaaatataatttcttgtttttga
aTGTGGTGGGTTTCTCATACGATCAAAGCGTGTGGATACATTCCTTATTG
GTTTGCCTCGATAAGCCTTTACCTTCAGACGCAAGTTCAACAATTCGTGA
TTTGTGTAGGCGAGTCATGGAGATACGTAACCAACTTACGGAACCGATAA
ATGATAACATTCTCCATCAATTGAACTTGATCATTATTTTGATCACACGT
TATTTCGGACAAGTGGACCTACTCGAGGAAAGTCATATAAATGATACTTA
TTACAAGTCTTGTTTACGGTCTAAAGAACGAGAAGCTTTCCGTAGGctag
aagaaaaggaagaaatcAATGAAGAAGAACCCATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011980XLOC_011980Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021395-proteinTCONS_00021395-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021395-exon-sc0000385-1491911889:42888..43902TCONS_00021395-exon-sc0000385-1491911889:42888..43902Clytia hemisphaericaexon
TCONS_00021395-exon-sc0000385-1510915933:42888..43902TCONS_00021395-exon-sc0000385-1510915933:42888..43902Clytia hemisphaericaexon
TCONS_00021395-exon-sc0000385-1575043694:42888..43902TCONS_00021395-exon-sc0000385-1575043694:42888..43902Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:42888..43902 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.16239	4.59282	27.4609	35.1056	12.9798	10.7885	11.8841	10.8079	8.74426	9.79523	7.80415	5.30604	6.46963	5.53311	8.92298	10.6773	13.1182	12.1926	3.08821	4.60257	5.85353	5.72932	13.3145	12.932	7.93954	8.09811	7.81586	5.15824	9.86004	11.3917
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017364GEMIN2
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000387spliceosomal snRNP assembly
GO:0000245spliceosomal complex assembly
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000245 spliceosomal complex assembly
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0005681 spliceosomal complex
Blast
[Close]
BLAST of TCONS_00021395 vs. Swiss-Prot (Human)
Match: GEMI2 (Gem-associated protein 2 OS=Homo sapiens GN=GEMIN2 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.915e-22
Identity = 80/248 (32.26%), Postives = 123/248 (49.60%), Query Frame = -1 
Query:  191 YDLTKPPMSGIDYIKRVQAEAALCPDVVIAE-QPKSSALLESKKSPAKKRDPLNRTRVFPTEERQFKVAEDFAFLRQKFNRVKTDPSSLCRLSKAVLPPVGSQQSWGRFCYGKDFTGTYFDFCLKGESGQLLNEGTKGQ----GSAPLLSVLLKLKQPMVVKLLKYNFLFLNVVGFSYDQSVWIHSLLVCLDKPLPSDASSTIRDLCRRVMEIRNQLTEPXXXXXXXXXXXXXXXITRYFGQVDLLEE 919
            +D + PP +  +Y++RVQ EAA CPDVV+A+  PK     +S         P       PT + Q +    F+ +RQ  N+ ++   S    S   +P    ++ W +FC G+         C  G  G   NE         G  PLLS++ ++ Q  V  +L+Y   +     F+ +   W+++LL CL+KPL  +A S IR L RR  E+R  L +  +D  +  LNL+I L++RYF Q DL +E
Sbjct:   40 FDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNISLSGCQPAPEG-YSPTLQWQQQQVAQFSTVRQNVNKHRSHWKSQQLDSNVTMPKSEDEEGWKKFCLGEKL-------CADGAVGPATNESPGIDYVQIGFPPLLSIVSRMNQATVTSVLEYLSNWFGERDFTPELGRWLYALLACLEKPLLPEAHSLIRQLARRCSEVR-LLVDSKDDERVPALNLLICLVSRYFDQRDLADE 278
The following BLAST results are available for this feature:
BLAST of TCONS_00021395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GEMI21.915e-2232.26Gem-associated protein 2 OS=Homo sapiens GN=GEMIN2... [more]
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