TCONS_00021377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021377
Unique NameTCONS_00021377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1051

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021377 ID=TCONS_00021377|Name=TCONS_00021377|organism=Clytia hemisphaerica|type=transcript|length=1051bp
CTGAACTCCCTCTTctgaatatctttttatctaGACAATCCTACCGTCTT
CAAAAGGTGACATTATAAAAGGACATAGTAAGAAGTGGAGGAGTGTGTAC
AGTCTTCCAAACTCTACCGTCGCTAGTTTTACGTAAACAACCCCGACGAC
TGTAAACCACTTCAATATATTTTCCCACGTTTACTATCTCTCTAAAGGAC
GATAGAAAACCATGACCGACTGATAACCGACTTGTCTAATACAGCAAAGG
CCTTTAGCATTGTCTACTTTTTTCTGATTAATTTCCACCTCAGATTAAGA
CTTTTCACTGTTGTTTTTCTAAATTCCCATATTCTTTTCATAGATGAAGT
TTGTTTTGTTGACATGTCTGTTCGTTGTTATCAACTGTGACCTAATGAAT
GATGAAACCCAAGTCAGAGATTTTAGTTTTAACACTGCCAATCAACAGAT
TCGAACCATCCAAGAGGTTGTAGCTAAAGAAGGAACACCAGGGGCATCAT
CGCCACCATGGGCGGCAACATACACCGTAGATAAAGCCTTCAATCATCCC
AACTATTATCGTGGATTCCATAGCAAAGATCCGTATGGCAACGCACCAGA
AATGATTTGGTATCATTTCAGAACCGGTTTCAAACCAGCTGAAGTTACTT
TTCGAGTGGGTGAGACTGCAAGCGTGGGTCCGGCCAAATACCAAATTGTC
GGAACCAACGATGAACATTGCAACCAATATTCTATATGGGACATCTTGTG
TGAAGATTTATCCGGTGAAAAGTTCGTAACACGATACCAAATCAAACGAT
GTGTTGTCAGCGATTTTCATACCAAGTCCTACAATTGTATTGGAATCCGA
GTTTTCGAAAACAGCAGTGCAACTCGAGATTATGGTATTGGAAATATCAG
ATTCTGGAAGAAGGTTTAAAAAACAGAAATCTTTGATGatatatttaata
tttatagattttagaaattcaaatttaattttatcttGATTTCCACACTC
AAAACTTGTCAACTAGTAAAATGTTCGTCTGTAATTCAGTAAGAATACAT
G
Run BLAST on NCBI

protein sequence of TCONS_00021377-protein

>TCONS_00021377-protein ID=TCONS_00021377-protein|Name=TCONS_00021377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MKFVLLTCLFVVINCDLMNDETQVRDFSFNTANQQIRTIQEVVAKEGTPG
ASSPPWAATYTVDKAFNHPNYYRGFHSKDPYGNAPEMIWYHFRTGFKPAE
VTFRVGETASVGPAKYQIVGTNDEHCNQYSIWDILCEDLSGEKFVTRYQI
KRCVVSDFHTKSYNCIGIRVFENSSATRDYGIGNIRFWKKV
Run BLAST on NCBI

transcript from alignment at sc0000385:353025..355629-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021377 ID=TCONS_00021377|Name=TCONS_00021377|organism=Clytia hemisphaerica|type=transcript|length=2605bp|location=Sequence derived from alignment at sc0000385:353025..355629- (Clytia hemisphaerica)
CTGAACTCCCTCTTCTGAATATCTTTTTATCTAGACAATCCTACCGTCTT
CAAAAGGTGACATTATAAAAGGACATAGTAAGAAGTGGAGGAGTGTGTAC
AGTCTTCCAAACTCTACCGTCGCTAGTTTTACGTAAACAACCCCGACGAC
TGTAAACCACTTCAATATATTTTCCCACGTTTACTATCTCTCTAAAGGAC
GATAGAAAACCATGACCGACTGATAACCGACTTGTCTAATACAGCAAAGG
CCTTTAGCATTGTCTACTTTTTTCTGATTAATTTCCACCTCAGATTAAGA
CTTTTCACTGTTGTTTTTCTAAATTCCCATATTCTTTTCATAGATGAAGT
TTGTTTTGTTGACATGTCTGTTCGTTGTTATCAACTGTGACCTAATGAAT
GATGAAACCCAAGTCAGAGATTTTAGTTTTAACAGTAAGTTTAAAATACT
AGCCTTCGGTCGAATAGGCCTCTAGCCTCAGCCTCAGCGCATAGATTTGT
AAAGCCCGAAGGGCTAGATGTCGTGCTTTAAGCTCTTCCAAGCTTCCAAA
AAAGTTAATATCGGGAAAAATATTACTGTTATTGTTTTCGAAAGCCCGCA
AAGCTTCTGATTGGTCAAGCGCTGAAATTATATTGTAATGTCACGTGACT
TAGGTAGGATACCTAAAGACAGTACACTTTTCAGCAAAAGTTTGACATCT
AGCCCTTCGGGCCCTTTACAAATCTATGCCTCAGCATCAGCCTCTAGCGA
AAAAGGTTCCTTATATACGAAGTATAGGGAAGAAAGGTATCGGGTATTCA
GTTCTCCAGGAATCCTCATGAACACCGTCTTAATCAAGCTACTGCCGGTT
ACCGGAACCAGCCAACTAAAAATATTTGATCGGAGTTTTTTTGAAATTGG
TGCCCTAATGGCGTCACTACTCAATAGCGATGAAAAAGCATCGAAAGCGC
TAGATCTACTTTTCCTCGAATACTTTTGATGATGTAGCGCCGTTAGACGT
TATTTTTTAATGTTGCAATGACTTCTTCTTAGTACCAATTACAACAAAAA
ACTCCGATCAAAGATGGCGAACATAACTTGGTCCAGGGATATATAAAGGT
AAGTGTGGGGACGCTTTTCTGGAAACCAATGCTCTCATACCGAGAGAAGT
TGCTCTTAGCTGACGTCAATTGTTTACAATATTGCCTTTTTTGTCATAAA
GAGACCAATTTTAGAGGTGATTATCAAAAATTTGTCAAAAAAAAACGCGA
AATTAAATTCCACGAAAATTTGTTCCGCGAAAATTTGTTCCCTTAAGGTA
CTAGACTGGAGTCTATAATGCGTGTATTACAGTAGTATAGGCGTTATATG
ATAATACGATTATTGTTACGGGATTTAGATTGTATAAAAACTGAGCTTGC
TAGACTATAAAGGTACTTGCATTTTACTTGTCAAGACCCTGGTAGAAGGG
GGCGTACGGGGGTTGCAGACACCGAAATACCGACGCATATTTCTTGGATT
ACCGTCAACACCGACAGCAAAATTTGGTAAAATCCTTATTTTGTCACCGC
ATGGCATGTTTGACACCGAAATACCGTCAGTTTTTTCTCCAAACACCGAA
ACACCGACAGAAAAAAGGGTTAATACCGTCACACCATCAAACCTGTACGT
TCCCCCCTGGTAGGAGTTTCTCAATTTAAGCTAAGCAAAATCTTTTAATC
GTGATGTAAATGTAAAAGTACCAAATACGCTAGATCTTATCCTTTATATG
ATGTAACCATTGAACGTTAGACAAAATTTTCTTTTCTATCCATTTCTAAA
GCTGCCAATCAACAGATTCGAACCATCCAAGAGGTTGTAGCTAAAGAAGG
AACACCAGGGGCATCATCGCCACCATGGGCGGCAACATACACCGTAGATA
AAGCCTTCAATCATCCCAACTATTATCGTGGATTCCATAGCAAAGATCCG
TATGGCAACGCACCAGAAATGATTTGGTATCATTTCAGAACCGGTTTCAA
ACCAGCTGAAGTTACTTTTCGAGTGGGTGGTATGTATCATTAATTTTAAT
TTAATTTTAATTATTCTACTTAAAGTTTTCCACGTTCATGAAACATTAGA
TGAACATTGCTTGGGAGAAAAGAAGTATAACAATCGTGACATTTTTGGCA
AATCTCAGTATTTCATTGTGTGAGTAATTATAGGAGATAGAAAACTTCTC
AATTTACCTGTTTCAGAGACTGCAAGCGTGGGTCCGGCCAAATACCAAAT
TGTCGGAACCAACGATGAACATTGCAACCAATATTCTATATGGGACATCT
TGTGTGAAGATTTATCCGGTGAAAAGTTCGTAACACGATACCAAATCAAA
CGATGTGTTGTCAGCGATTTTCATACCAAGTCCTACAATTGTATTGGAAT
CCGAGTTTTCGAAAACAGCAGTGCAACTCGAGATTATGGTATTGGAAATA
TCAGATTCTGGAAGAAGGTTTAAAAAACAGAAATCTTTGATGATATATTT
AATATTTATAGATTTTAGAAATTCAAATTTAATTTTATCTTGATTTCCAC
ACTCAAAACTTGTCAACTAGTAAAATGTTCGTCTGTAATTCAGTAAGAAT
ACATG

Coding sequence (CDS) from alignment at sc0000385:353025..355629-

>TCONS_00021377 ID=TCONS_00021377|Name=TCONS_00021377|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at sc0000385:353025..355629- (Clytia hemisphaerica)
AGACTGCAAGCGTGGGTCCGGCCAAATACCAAATTGTCGGAACCAACGAT
GAACATTGCAACCAATATTCTATATGGGACATCTTGTGTGAAGATTTATC
CGGTGAAAAGTTCGTAACACGATACCAAATCAAACGATGTGTTGTCAGCG
ATTTTCATACCAAGTCCTACAATTGTATTGGAATCCGAGTTTTCGAAAAC
AGCAGTGCAACTCGAGATTATGGTATTGGAAATATCAGATTCTGGAAGAA
GGTTTAACTGCCAATCAACAGATTCGAACCATCCAAGAGGTTGTAGCTAA
AGAAGGAACACCAGGGGCATCATCGCCACCATGGGCGGCAACATACACCG
TAGATAAAGCCTTCAATCATCCCAACTATTATCGTGGATTCCATAGCAAA
GATCCGTATGGCAACGCACCAGAAATGATTTGGTATCATTTCAGAACCGG
TTTCAAACCAGCTGAAGTTACTTTTCGAGTGGGTGATGAAGTTTGTTTTG
TTGACATGTCTGTTCGTTGTTATCAACTGTGACCTAATGAATGATGAAAC
CCAAGTCAGAGATTTTAGTTTTAACAAGACTGCAAGCGTGGGTCCGGCCA
AATACCAAATTGTCGGAACCAACGATGAACATTGCAACCAATATTCTATA
TGGGACATCTTGTGTGAAGATTTATCCGGTGAAAAGTTCGTAACACGATA
CCAAATCAAACGATGTGTTGTCAGCGATTTTCATACCAAGTCCTACAATT
GTATTGGAATCCGAGTTTTCGAAAACAGCAGTGCAACTCGAGATTATGGT
ATTGGAAATATCAGATTCTGGAAGAAGGTTTAACTGCCAATCAACAGATT
CGAACCATCCAAGAGGTTGTAGCTAAAGAAGGAACACCAGGGGCATCATC
GCCACCATGGGCGGCAACATACACCGTAGATAAAGCCTTCAATCATCCCA
ACTATTATCGTGGATTCCATAGCAAAGATCCGTATGGCAACGCACCAGAA
ATGATTTGGTATCATTTCAGAACCGGTTTCAAACCAGCTGAAGTTACTTT
TCGAGTGGGTGATGAAGTTTGTTTTGTTGACATGTCTGTTCGTTGTTATC
AACTGTGACCTAATGAATGATGAAACCCAAGTCAGAGATTTTAGTTTTAA
CAAGACTGCAAGCGTGGGTCCGGCCAAATACCAAATTGTCGGAACCAACG
ATGAACATTGCAACCAATATTCTATATGGGACATCTTGTGTGAAGATTTA
TCCGGTGAAAAGTTCGTAACACGATACCAAATCAAACGATGTGTTGTCAG
CGATTTTCATACCAAGTCCTACAATTGTATTGGAATCCGAGTTTTCGAAA
ACAGCAGTGCAACTCGAGATTATGGTATTGGAAATATCAGATTCTGGAAG
AAGGTTTAACTGCCAATCAACAGATTCGAACCATCCAAGAGGTTGTAGCT
AAAGAAGGAACACCAGGGGCATCATCGCCACCATGGGCGGCAACATACAC
CGTAGATAAAGCCTTCAATCATCCCAACTATTATCGTGGATTCCATAGCA
AAGATCCGTATGGCAACGCACCAGAAATGATTTGGTATCATTTCAGAACC
GGTTTCAAACCAGCTGAAGTTACTTTTCGAGTGGGTGATGAAGTTTGTTT
TGTTGACATGTCTGTTCGTTGTTATCAACTGTGACCTAATGAATGATGAA
ACCCAAGTCAGAGATTTTAGTTTTAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011967XLOC_011967Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021377-proteinTCONS_00021377-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021377-exon-sc0000385-1575043694:355196..355629TCONS_00021377-exon-sc0000385-1575043694:355196..355629Clytia hemisphaericaexon
TCONS_00021377-exon-sc0000385-1575043694:353601..353828TCONS_00021377-exon-sc0000385-1575043694:353601..353828Clytia hemisphaericaexon
TCONS_00021377-exon-sc0000385-1575043694:353025..353413TCONS_00021377-exon-sc0000385-1575043694:353025..353413Clytia hemisphaericaexon
TCONS_00021377-exon-sc0000385-1510915933:355196..355629TCONS_00021377-exon-sc0000385-1510915933:355196..355629Clytia hemisphaericaexon
TCONS_00021377-exon-sc0000385-1510915933:353601..353828TCONS_00021377-exon-sc0000385-1510915933:353601..353828Clytia hemisphaericaexon
TCONS_00021377-exon-sc0000385-1510915933:353025..353413TCONS_00021377-exon-sc0000385-1510915933:353025..353413Clytia hemisphaericaexon
TCONS_00021377-exon-sc0000385-1491911889:355196..355629TCONS_00021377-exon-sc0000385-1491911889:355196..355629Clytia hemisphaericaexon
TCONS_00021377-exon-sc0000385-1491911889:353601..353828TCONS_00021377-exon-sc0000385-1491911889:353601..353828Clytia hemisphaericaexon
TCONS_00021377-exon-sc0000385-1491911889:353025..353413TCONS_00021377-exon-sc0000385-1491911889:353025..353413Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:353025..355629 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.270135	0	0.203907	0.0933487	0.121431	0.0959562	1.85227	3.57653	26.5192	8.06198	28.2806	46.7419	6.62141	5.5995	16.572	18.9368	1.41953	3.0485	3.25448	2.58188	0.261182	0.509582	0	0.131766	0	0	0	0.13177	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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