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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021323 ID=TCONS_00021323|Name=TCONS_00021323|organism=Clytia hemisphaerica|type=transcript|length=1508bp
CTAGCCACTTGAGTGCGCCTTATCCCTCTACAGACATAGTAGAGTCTTCG
CATGGAAGCAATTCTAACTTCGACGCCTTGTTGGAGTGCGCAAAACTGAA
TTCCATAGAAATATACCTTTATTGTATTGTACTGTAGGCCTTGTCTCGCA
AGGGAAGTGACAAATAGTTCTAAATGTAATTCTTGTGGCGGCAACCACAC
AAAGCGATACatgaagcaaaatctttgaaagcGATTGAAGCCTGATTGAT
ATGCATGCAAAGAGTTTCGAGAGATACCTTCACCTAGTAAACGGTCTCGA
GCAAGTCTAAGATCTCCCATGCTTCCTCCGGGATCCTGGAAGGTTCTGGA
CTGGCGGACTCGGCTAGACTCAAGAACCGGCCAACCTGCAGGCGAGAGAA
AGTAAGTCAGCAAAAACATTATCTTTGCCTGGCAGGTGTACCAAAAGAAT
ATTGATGTTCATCCTTGCAATGGAAAGAAAAAGGTGTCGAACtagtttca
tcaaaagtttgTCTTTACAGGAACCTGAACGCCAAACGAGAACAATGTCT
AAATTATCTCTAGAAATAGTGAGCTGCTTATTAACCAGGTTATCCGCCCA
AGTAATTACAGCCATGGCAACTGCAACAAACTCTAAGATATGAATAGGAG
TTCCTTGTGCAGAAGCTGGCAATGCAACAGAAAACCATTTAGGACCCAAG
ACAGCACCTATCCCGAAACCAGACGCATCTGTGAAGAAATCTAAGTGTTC
TGATGTCACTACAGGATCCTGGAAAAAAGCGGTCCCGTTCCATCTCTGAG
CAAAATCACCCCACCACTTGATGTCTTCAAGAGCAGGTTCAGAAATTTCC
ACTATGTCATTAAGCTCTGTCACCGATGTGGAGAGGTCAATCAACCGCCT
CATGAAAGTGCGACCTGGCTTAATGACCTTGGCTGCAAAAGACAAAGAAC
CAATCAACGAGAGCAACTCTCGCTTTGAAGTCTGAGAAGCGTTATTCCAA
CCTTGTAGCTTACCTAACAaatcttttaactttttgtctGGTAATCGACA
ACACTTGTTCAGAGTATCTATTTCTatgcctaaaaatgttattgTCTGAC
AAGGGCCTTCTTTTTTGTCCTCTGCTTGGGGAATGTTCAAATTGTTACAA
ATCCTGTCAAATTGGTTCATTGCCTGTGTACAAATATCTACAGATGAACC
AGTGAAGAAATAATCATCCAGGTAGTGTAACATGTCTTTAATTCCTCCTT
TAACTTTGCAAATCCACTCCAAGGAGTCAGCAAATGTGTTGAAAATGTAT
GGGGAAGAGTGCAAACCAAAAGGCAACACAATGTCTACATAATACTTGCC
TTTCCACCAGTAAACCATTAAAGGCCAGTCTTCCGGATGAATTGGGCAGA
GCCGGAAAGCGTGCCTAATATCCCTTTTTCCCATGAAACAACCTGTAGGT
GTAGCAGCTAAATCGACCGCATCATCAAACTTAGaatattttacagaaaa
agcTTCCC Run BLAST on NCBI protein sequence of TCONS_00021323-protein >TCONS_00021323-protein ID=TCONS_00021323-protein|Name=TCONS_00021323-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
EAFSVKYSKFDDAVDLAATPTGCFMGKRDIRHAFRLCPIHPEDWPLMVYW
WKGKYYVDIVLPFGLHSSPYIFNTFADSLEWICKVKGGIKDMLHYLDDYF
FTGSSVDICTQAMNQFDRICNNLNIPQAEDKKEGPCQTITFLGIEIDTLN
KCCRLPDKKLKDLLGKLQGWNNASQTSKRELLSLIGSLSFAAKVIKPGRT
FMRRLIDLSTSVTELNDIVEISEPALEDIKWWGDFAQRWNGTAFFQDPVV
TSEHLDFFTDASGFGIGAVLGPKWFSVALPASAQGTPIHILEFVAVAMAV
ITWADNLVNKQLTISRDNLDIVLVWRSGSCKDKLLMKLVRHLFLSIARMN
INILLVHLPGKDNVFADLLSLACRLAGS Run BLAST on NCBI transcript from alignment at sc0000382:286671..288178 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021323 ID=TCONS_00021323|Name=TCONS_00021323|organism=Clytia hemisphaerica|type=transcript|length=1508bp|location=Sequence derived from alignment at sc0000382:286671..288178 (Clytia hemisphaerica)
GGGAAgctttttctgtaaaatattCTAAGTTTGATGATGCGGTCGATTTA
GCTGCTACACCTACAGGTTGTTTCATGGGAAAAAGGGATATTAGGCACGC
TTTCCGGCTCTGCCCAATTCATCCGGAAGACTGGCCTTTAATGGTTTACT
GGTGGAAAGGCAAGTATTATGTAGACATTGTGTTGCCTTTTGGTTTGCAC
TCTTCCCCATACATTTTCAACACATTTGCTGACTCCTTGGAGTGGATTTG
CAAAGTTAAAGGAGGAATTAAAGACATGTTACACTACCTGGATGATTATT
TCTTCACTGGTTCATCTGTAGATATTTGTACACAGGCAATGAACCAATTT
GACAGGATTTGTAACAATTTGAACATTCCCCAAGCAGAGGACAAAAAAGA
AGGCCCTTGTCAGAcaataacatttttaggcatAGAAATAGATACTCTGA
ACAAGTGTTGTCGATTACCagacaaaaagttaaaagattTGTTAGGTAAG
CTACAAGGTTGGAATAACGCTTCTCAGACTTCAAAGCGAGAGTTGCTCTC
GTTGATTGGTTCTTTGTCTTTTGCAGCCAAGGTCATTAAGCCAGGTCGCA
CTTTCATGAGGCGGTTGATTGACCTCTCCACATCGGTGACAGAGCTTAAT
GACATAGTGGAAATTTCTGAACCTGCTCTTGAAGACATCAAGTGGTGGGG
TGATTTTGCTCAGAGATGGAACGGGACCGCTTTTTTCCAGGATCCTGTAG
TGACATCAGAACACTTAGATTTCTTCACAGATGCGTCTGGTTTCGGGATA
GGTGCTGTCTTGGGTCCTAAATGGTTTTCTGTTGCATTGCCAGCTTCTGC
ACAAGGAACTCCTATTCATATCTTAGAGTTTGTTGCAGTTGCCATGGCTG
TAATTACTTGGGCGGATAACCTGGTTAATAAGCAGCTCACTATTTCTAGA
GATAATTTAGACATTGTTCTCGTTTGGCGTTCAGGTTCCTGTAAAGAcaa
acttttgatgaaactaGTTCGACACCTTTTTCTTTCCATTGCAAGGATGA
ACATCAATATTCTTTTGGTACACCTGCCAGGCAAAGATAATGTTTTTGCT
GACTTACTTTCTCTCGCCTGCAGGTTGGCCGGTTCTTGAGTCTAGCCGAG
TCCGCCAGTCCAGAACCTTCCAGGATCCCGGAGGAAGCATGGGAGATCTT
AGACTTGCTCGAGACCGTTTACTAGGTGAAGGTATCTCTCGAAACTCTTT
GCATGCATATCAATCAGGCTTCAATCgctttcaaagattttgcttcatGT
ATCGCTTTGTGTGGTTGCCGCCACAAGAATTACATTTAGAACTATTTGTC
ACTTCCCTTGCGAGACAAGGCCTACAGTACAATACAATAAAGGTATATTT
CTATGGAATTCAGTTTTGCGCACTCCAACAAGGCGTCGAAGTTAGAATTG
CTTCCATGCGAAGACTCTACTATGTCTGTAGAGGGATAAGGCGCACTCAA
GTGGCTAG Coding sequence (CDS) from alignment at sc0000382:286671..288178 >TCONS_00021323 ID=TCONS_00021323|Name=TCONS_00021323|organism=Clytia hemisphaerica|type=CDS|length=1137bp|location=Sequence derived from alignment at sc0000382:286671..288178 (Clytia hemisphaerica)
GAAgctttttctgtaaaatattCTAAGTTTGATGATGCGGTCGATTTAGC
TGCTACACCTACAGGTTGTTTCATGGGAAAAAGGGATATTAGGCACGCTT
TCCGGCTCTGCCCAATTCATCCGGAAGACTGGCCTTTAATGGTTTACTGG
TGGAAAGGCAAGTATTATGTAGACATTGTGTTGCCTTTTGGTTTGCACTC
TTCCCCATACATTTTCAACACATTTGCTGACTCCTTGGAGTGGATTTGCA
AAGTTAAAGGAGGAATTAAAGACATGTTACACTACCTGGATGATTATTTC
TTCACTGGTTCATCTGTAGATATTTGTACACAGGCAATGAACCAATTTGA
CAGGATTTGTAACAATTTGAACATTCCCCAAGCAGAGGACAAAAAAGAAG
GCCCTTGTCAGAcaataacatttttaggcatAGAAATAGATACTCTGAAC
AAGTGTTGTCGATTACCagacaaaaagttaaaagattTGTTAGGTAAGCT
ACAAGGTTGGAATAACGCTTCTCAGACTTCAAAGCGAGAGTTGCTCTCGT
TGATTGGTTCTTTGTCTTTTGCAGCCAAGGTCATTAAGCCAGGTCGCACT
TTCATGAGGCGGTTGATTGACCTCTCCACATCGGTGACAGAGCTTAATGA
CATAGTGGAAATTTCTGAACCTGCTCTTGAAGACATCAAGTGGTGGGGTG
ATTTTGCTCAGAGATGGAACGGGACCGCTTTTTTCCAGGATCCTGTAGTG
ACATCAGAACACTTAGATTTCTTCACAGATGCGTCTGGTTTCGGGATAGG
TGCTGTCTTGGGTCCTAAATGGTTTTCTGTTGCATTGCCAGCTTCTGCAC
AAGGAACTCCTATTCATATCTTAGAGTTTGTTGCAGTTGCCATGGCTGTA
ATTACTTGGGCGGATAACCTGGTTAATAAGCAGCTCACTATTTCTAGAGA
TAATTTAGACATTGTTCTCGTTTGGCGTTCAGGTTCCTGTAAAGAcaaac
ttttgatgaaactaGTTCGACACCTTTTTCTTTCCATTGCAAGGATGAAC
ATCAATATTCTTTTGGTACACCTGCCAGGCAAAGATAATGTTTTTGCTGA
CTTACTTTCTCTCGCCTGCAGGTTGGCCGGTTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021323-exon-sc0000382-1491911889:286671..288178 | TCONS_00021323-exon-sc0000382-1491911889:286671..288178 | Clytia hemisphaerica | exon |
| TCONS_00021323-exon-sc0000382-1510915933:286671..288178 | TCONS_00021323-exon-sc0000382-1510915933:286671..288178 | Clytia hemisphaerica | exon |
| TCONS_00021323-exon-sc0000382-1575043694:286671..288178 | TCONS_00021323-exon-sc0000382-1575043694:286671..288178 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000382 | supercontig | sc0000382:286671..288178 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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