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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021299 ID=TCONS_00021299|Name=TCONS_00021299|organism=Clytia hemisphaerica|type=transcript|length=3159bpRun BLAST on NCBI protein sequence of TCONS_00021299-protein >TCONS_00021299-protein ID=TCONS_00021299-protein|Name=TCONS_00021299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=859bp MWEDFNGKKTFHAQWLYRSSETILGESGDPNEFFLSDDCDNNPLASIMEKRun BLAST on NCBI transcript from alignment at sc0000382:57486..105679- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021299 ID=TCONS_00021299|Name=TCONS_00021299|organism=Clytia hemisphaerica|type=transcript|length=48194bp|location=Sequence derived from alignment at sc0000382:57486..105679- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000382:57486..105679- >TCONS_00021299 ID=TCONS_00021299|Name=TCONS_00021299|organism=Clytia hemisphaerica|type=CDS|length=59340bp|location=Sequence derived from alignment at sc0000382:57486..105679- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021299 vs. Swiss-Prot (Human)
Match: DNMT1 (DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1 SV=2) HSP 1 Score: 937.176 bits (2421), Expect = 0.000e+0 Identity = 472/872 (54.13%), Postives = 604/872 (69.27%), Query Frame = 1
Query: 4 ISVGDYVKVCPQNPSDPLYVCRVRYMWEDFNGKKTFHAQWLYRSSETILGESGDPNEFFLSDDCDNNPLASIMEKCNIRCHKTEDNWKDIGGSD----LPDQDTEEHLYDLFVQKWYDVEDGCFIDFPEEFLKEDFEERYCPCCERDNKRKKFNTPALFEKLEDCLDSDETLYKNLTWRNEVYSVGDCVYIHPDTXXXXXXXXXXXXXXXRDLDYDEEKYPELYRKSNDYIKGNNANIASPYRIGCIMEIKQSKGSYGE--DKNILIKVRKYYRPENTHLGMKGTHNTDLNLLYWSNEDATIEFNENVEGKCFVLYADDEEANIAEYTDAGPDRFYFNESYDADSESFDIPPNKARSELAYXXXXXXXXXXXXXXXXXLFQKNTYNVEFPIYQKVDRLRTLDIFAGCGGLSEGLHQVGVADSRWAVEFEPSAAQAYRLNNPGAVVFNADCNNILKMIMEGRETDDSGQRLPRKGEVDLLCGGPPCQGFSGMNRFNSREYSMFKNSLVVSYLSYCDYFRPRFFILENVRNFVSFKKGMVLKLIMKTLLKMGYQCEFGVLQAGSYGVPQTRRRAILIAAAPGEVLPKYPEPQHVFSPKGLSLSVMIDEKKFQA-LKRLHTAPYRTITVRDAMSDLPTIKNGHQKLEISYDTEPISHFQKMMRNMHNQQVLRDHICKDMSPLVEARMRYIPCKPGSDWRDLPNMVVTLRDGSSSKILHYLHDDKKQGRNESGGLRGVCACA-SGNQCDSSDRQFNTLIPWCLPHTSNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQNRVVSVRECARSQGFPDSVRFYGSILDKHRQIGNAVAPPMAAAIGQELRKSIIQKLKQDEEIVKSKENE 2595
+ VGD V V P + S PLY+ RV +WED + + FHA W ++T+LG + DP E FL D+C++ L+ I K + +NW GG D L D + + Y L WYD + F P+ ED + ++C C R + ++ P + E+LED LDS LY + T +Y VGD VY+ P+ F F K+ + V + +++ DE+ YPE YRK +DYIKG+N + PYRIG I EI K S G + +I I+V K+YRPENTH +++ D+NLLYWS+E+A ++F + V+G+C V Y +D + Y+ GP+RFYF E+Y+A S+SF+ PPN ARS K + E I K+ +LRTLD+F+GCGGLSEG HQ G++D+ WA+E AAQA+RLNNPG+ VF DCN +LK++M G T+ GQRLP+KG+V++LCGGPPCQGFSGMNRFNSR YS FKNSLVVS+LSYCDY+RPRFF+LENVRNFVSFK+ MVLKL ++ L++MGYQC FGVLQAG YGV QTRRRAI++AAAPGE LP +PEP HVF+P+ LSV++D+KKF + + RL + P+RTITVRD MSDLP ++NG LEISY+ EP S FQ+ +R Q +LRDHICKDMS LV ARMR+IP PGSDWRDLPN+ V L DG+ ++ L Y H D+K GR+ SG LRGVC+C +G CD + RQFNTLIPWCLPHT NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQ+RVVSVRECARSQGFPD+ R +G+ILDKHRQ+GNAV PP+A AIG E++ ++ K ++ K KE E
Sbjct: 757 LEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQL----WYDQDYARFESPPKTQPTEDNKFKFCVSCARLAEMRQKEIPRVLEQLED-LDS-RVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKE-PVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDF-KAVQGRCTVEYGEDLPECVQVYSMGGPNRFYFLEAYNAKSKSFEDPPNHARSPGNKGKGKGKGKGKPK-------SQACEPSEPEIEIKLPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIKLCMLAKARESAS-AKIKEEE 1612 The following BLAST results are available for this feature:
BLAST of TCONS_00021299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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