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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021296 ID=TCONS_00021296|Name=TCONS_00021296|organism=Clytia hemisphaerica|type=transcript|length=1973bp
CGCTAACATATATGGCAATGAAAAAATAGTGTCATGAAAATGGCATCACG
GAATAATACGGATGAgtttaagaaaaattatcatcaagaaaaaaaaaggt
aTTGACGTTGGAACGTGAAGGAGTGtacatcaaaattaaaatagacgcga
aaaaaaaactttttccaaaaacaaaacacgaaatatttgaatattttttg
tttattttctcaaCGACTTCAAAAACCAAGTTGGATCTCATCAATCATTT
CAACAATCGACATATACTTTATACCAAGATGGCTACAGAAGATTTGCAAA
GAAAACGAGGTCAACTTCAACGTCAGTCCACAATCAAGGAAAACATTGCT
AATGAACATTTAATCAAACTGGAAGAACTCTGCGATAAACTGAATACAGA
TTACCTACAAGGAATGACAACAAAAGCAGCTAAAAAAGGACTTAAGAATT
ACGGATACAACATTTACTCCAAACCAAAAACACAAACTGGATCACTGACA
CGGTTATTTCAGAAAGAGCAAACTCGAAGCATGGTTGATAGTTCATGGAC
TAAGAGAGACTGGAACCGGGTTTTTAATTCGCGCTCCAAAGAGGAATACA
ACGTTGTACGGAACGGGACGCATGAACTTGTCCAGCGGAAAGATATAGTA
CCTGGGGATTTAGTCTTATTACAACCAAAACAAATTGTACCGGCAGATAT
GAGAGTGATAAGTTATGAAGGAGAACTTGTAGTCGATAATCGTATTATAA
CTGGAAATACTGCAGAACTAAAATCAATCAGTGCTACTTCAAATGACTTT
TTACTATCACAGAATATGATTTTTGGATGTACTGAAATTCTGTCCGGTAG
TTGTGAAGCTATTGTGATTAAAACTGGAAATGAGACTGTTTTCGGACACT
TGACACAGTTTGCGACTAAAGTTAAACTGGCACGACGTCATGATAGTATG
TCATTATCGTCTACATCATCAGGATCAAGCAATTCTATTGGTCCATCTAC
GTCACGTGATTTTGAAGATAATAGCAGTCAAAGTTCCAATTCTACACCAC
CATCACCTAGATTTACTTAAATTTCATGACCTCTTTATAGATATTTTATC
TTACGGTCTTTGCTATAATATCTTCATAAGTTTTTCAGAAACCAAACACA
GAAAAAACTGAGGGGTATAAAGATTAAAGGTCTTGGATAGAAAAGTTTTG
AACAATAAAGAGCTTGTCTTGAATAATATAAACGGGCCTTAGTTCTGAAA
ATCTTAAAACAGGTCTTGAAAAAACTTAGGCCAAAATTGACGTCAAGAAA
TTATAGGATCAACAATGACGTTTTTAGGCCAATTTTTTCTTCCCGAAAGT
TCTTTCCCTTTAAACTCAAGCCAAAAGCCTATTAGACATCATGCCATGTT
TTTTTACATTGTTTGCTATATCGATTAGTGAATTTAATTAATCACTGTAC
TGAGATAAAAAATGTCTTAGTAAAACTACTCAGTAAAATCACACGCTCTT
TTAGGATTAATCGCATTACAGTTTCCCTCTTTCGTAAACACTAAAGAGAT
AATGAAAATCAATTATCTCTTTAAGGATAAGGGAAAACTTGTTAGCGATG
ACTTTTACTCATAAGCGACTTTATCATTAAGAATTCAAGCATTATATAAA
AATTAACGTTATTATATATTATGAAGAGATATAATGAAAAGATGTTATGA
AAATgtaatataaaatattttagaattagATCATGCGTACTTGAAAACCG
TGGGAACCATGGATTAAACGcgttgaataactttttatgacatcaaatat
tttttaaagaaaaggaaaaattatataaatttcCTTGCTATTTCTTTTGT
ATATGATTATCTCCTACTGTACATATATGATATacaattttttgaatata
tttaaaatgaaatacaAGTGATGTAAGATAATATCCAACAATCAGAAAAT
ATActttgaaaaatgataaaaaa Run BLAST on NCBI transcript from alignment at sc0000382:203903..206362+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021296 ID=TCONS_00021296|Name=TCONS_00021296|organism=Clytia hemisphaerica|type=transcript|length=2460bp|location=Sequence derived from alignment at sc0000382:203903..206362+ (Clytia hemisphaerica)
CGCTAACATATATGGCAATGAAAAAATAGTGTCATGAAAATGGCATCACG
GAATAATACGGATGAgtttaagaaaaattatcatcaagaaaaaaaaaggt
aGTAGTAAAATACGTTTCATTGATATTTGAAATTACTCAATGAAAAGCGA
ATGATAAAAGtttagtacacgtttttttataagaacaagaagCTTCGAtg
tccaaaatattaagaacaatttaagaacattttaaggctttctggactat
aaaatactcacaaaatggtgagaataagaaaattttgaggcttaaaacat
aaagttaagaacacctgaaggcttcaaaaatttaggaagtccttataaaa
aacgtgtacaatacataaaaaagctattaaaatacCAAAGCAGTAATGCA
GTGATAAATTGCTGGAATTCAATTTTATAACTTTAAAGAGCAGCGCGCGC
GTCTCCTAGGGGACTGGGTACTAGGTTTACGTAAAGGGATATTATAATGA
AATCAGAATCTATTGATTGATGATAATCTTTTTGAGATTGACAGcttcat
ttttataaaagaatgttttaatGGTTTTTAAATTTCAGTTGACGTTGGAA
CGTGAAGGAGTGtacatcaaaattaaaatagacgcgaaaaaaaaactttt
tccaaaaacaaaacacgaaatatttgaatattttttgtttattttctcaa
CGACTTCAAAAACCAAGTTGGATCTCATCAATCATTTCAACAATCGACAT
ATACTTTATACCAAGATGGCTACAGAAGATTTGCAAAGAAAACGAGGTCA
ACTTCAACGTCAGTCCACAATCAAGGAAAACATTGCTAATGAACATTTAA
TCAAACTGGAAGAACTCTGCGATAAACTGAATACAGATTACCTACAAGGA
ATGACAACAAAAGCAGCTAAAAAAGGACTTAAGAATTACGGATACAACAT
TTACTCCAAACCAAAAACACAAACTGGATCACTGACACGGTTATTTCAGA
AAGAGCAAACTCGAAGCATGGTTGATAGTTCATGGACTAAGAGAGACTGG
AACCGGGTTTTTAATTCGCGCTCCAAAGAGGAATACAACGTTGTACGGAA
CGGGACGCATGAACTTGTCCAGCGGAAAGATATAGTACCTGGGGATTTAG
TCTTATTACAACCAAAACAAATTGTACCGGCAGATATGAGAGTGATAAGT
TATGAAGGAGAACTTGTAGTCGATAATCGTATTATAACTGGAAATACTGC
AGAACTAAAATCAATCAGTGCTACTTCAAATGACTTTTTACTATCACAGA
ATATGATTTTTGGATGTACTGAAATTCTGTCCGGTAGTTGTGAAGCTATT
GTGATTAAAACTGGAAATGAGACTGTTTTCGGACACTTGACACAGTTTGC
GACTAAAGTTAAACTGGCACGACGTCATGATAGTATGTCATTATCGTCTA
CATCATCAGGATCAAGCAATTCTATTGGTCCATCTACGTCACGTGATTTT
GAAGATAATAGCAGTCAAAGTTCCAATTCTACACCACCATCACCTAGATT
TACTTAAATTTCATGACCTCTTTATAGATATTTTATCTTACGGTCTTTGC
TATAATATCTTCATAAGTTTTTCAGAAACCAAACACAGAAAAAACTGAGG
GGTATAAAGATTAAAGGTCTTGGATAGAAAAGTTTTGAACAATAAAGAGC
TTGTCTTGAATAATATAAACGGGCCTTAGTTCTGAAAATCTTAAAACAGG
TCTTGAAAAAACTTAGGCCAAAATTGACGTCAAGAAATTATAGGATCAAC
AATGACGTTTTTAGGCCAATTTTTTCTTCCCGAAAGTTCTTTCCCTTTAA
ACTCAAGCCAAAAGCCTATTAGACATCATGCCATGTTTTTTTACATTGTT
TGCTATATCGATTAGTGAATTTAATTAATCACTGTACTGAGATAAAAAAT
GTCTTAGTAAAACTACTCAGTAAAATCACACGCTCTTTTAGGATTAATCG
CATTACAGTTTCCCTCTTTCGTAAACACTAAAGAGATAATGAAAATCAAT
TATCTCTTTAAGGATAAGGGAAAACTTGTTAGCGATGACTTTTACTCATA
AGCGACTTTATCATTAAGAATTCAAGCATTATATAAAAATTAACGTTATT
ATATATTATGAAGAGATATAATGAAAAGATGTTATGAAAATgtaatataa
aatattttagaattagATCATGCGTACTTGAAAACCGTGGGAACCATGGA
TTAAACGcgttgaataactttttatgacatcaaatattttttaaagaaaa
ggaaaaattatataaatttcCTTGCTATTTCTTTTGTATATGATTATCTC
CTACTGTACATATATGATATacaattttttgaatatatttaaaatgaaat
acaAGTGATGTAAGATAATATCCAACAATCAGAAAATATActttgaaaaa
tgataaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021296-exon-sc0000382-1491911889:203903..204003 | TCONS_00021296-exon-sc0000382-1491911889:203903..204003 | Clytia hemisphaerica | exon |
| TCONS_00021296-exon-sc0000382-1510915933:203903..204003 | TCONS_00021296-exon-sc0000382-1510915933:203903..204003 | Clytia hemisphaerica | exon |
| TCONS_00021296-exon-sc0000382-1575043694:203903..204003 | TCONS_00021296-exon-sc0000382-1575043694:203903..204003 | Clytia hemisphaerica | exon |
| TCONS_00021296-exon-sc0000382-1491911889:204491..206362 | TCONS_00021296-exon-sc0000382-1491911889:204491..206362 | Clytia hemisphaerica | exon |
| TCONS_00021296-exon-sc0000382-1510915933:204491..206362 | TCONS_00021296-exon-sc0000382-1510915933:204491..206362 | Clytia hemisphaerica | exon |
| TCONS_00021296-exon-sc0000382-1575043694:204491..206362 | TCONS_00021296-exon-sc0000382-1575043694:204491..206362 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000382 | supercontig | sc0000382:203903..206362 + |
Blast
The following BLAST results are available for this feature:
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