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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021277 ID=TCONS_00021277|Name=TCONS_00021277|organism=Clytia hemisphaerica|type=transcript|length=1006bp
ttGTTGTCATTTTTCTATCTGTAGTGTGCCAGACACCAGAGGTATGGCAC
ATTTCACAACGGTTTATCATGGACATATCTTACCAAATGGTATGGTTCCG
TTGCATACATCACAAGGACAAGAATTGCTTCagaaaacaacaaagaaaaa
taaaattgttgtgAATGATTTTAAAACTCAAATTGGCGACACTAACTGTG
GCCCAACCTCTCTAGCATTGGTTTTAAATGCGATCAATAGTTTTCATGTT
AAACTTTCAGATCCTGATTTAACGGACAAAGAATATGAAACCCTGATGGA
AAAAATGAATGATGACAAGGAATTAATTCTGACTGAGTTTGATATTATTA
ACCATGGAAAAGTGAAAGATTATTTTAGAGATATCAATATTGAAAAGAAT
GGGATGACTTTGTTACAGCTGGGACATGTTGCTACTCGTTTGGGATATGG
TGTGAATACTTATTTTGCTTACAATAATTCAATAGAAATATCTGaggata
aaaaaagtgaattcaACGATTTGATTAGTTCACCAACTTTTCATACACTC
GAAACATCTAGTGATTTTGAAGCACTTGTTGAAAACCGTATTAGAAGGCC
AGTAACTGGCGTGATATTAAATTATGACATGTCAAAATTAGGTTATACAT
CGTTCCCAGGACACTACAGCCCCATTGGAGCTTTGAATGATGAAATGATC
CTTGTGATGGATGTATGGAAACAAACAAAACCTGCTTGGGTTGATAAGAA
ACTCTTGTTTGATGCAATGTCAACTGTCGATAGTGATTGTGGATTTCCAA
GAGGACTTCTACATATTCATGAACTTTTATAGTATATTAGCATCACAACT
ATTGAATTGTTTTactttgaaattcttttatCACATGCCTAAGTTACTCc
taatttttaaatcaataagTTCAAATGattcttttttgctttaatCTTTT
CAtggattgggctcttccagaaaaaatccgttcatggggggtggaggata
tattat Run BLAST on NCBI protein sequence of TCONS_00021277-protein >TCONS_00021277-protein ID=TCONS_00021277-protein|Name=TCONS_00021277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
CCHFSICSVPDTRGMAHFTTVYHGHILPNGMVPLHTSQGQELLQKTTKKN
KIVVNDFKTQIGDTNCGPTSLALVLNAINSFHVKLSDPDLTDKEYETLME
KMNDDKELILTEFDIINHGKVKDYFRDINIEKNGMTLLQLGHVATRLGYG
VNTYFAYNNSIEISEDKKSEFNDLISSPTFHTLETSSDFEALVENRIRRP
VTGVILNYDMSKLGYTSFPGHYSPIGALNDEMILVMDVWKQTKPAWVDKK
LLFDAMSTVDSDCGFPRGLLHIHELL Run BLAST on NCBI transcript from alignment at sc0000380:300914..303511- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021277 ID=TCONS_00021277|Name=TCONS_00021277|organism=Clytia hemisphaerica|type=transcript|length=2598bp|location=Sequence derived from alignment at sc0000380:300914..303511- (Clytia hemisphaerica)
TTGTTGTCATTTTTCTATCTGTAGTGTGCCAGACACCAGAGGTGACAAAG
TTGAAATATATAGACTGGCATAGGATAAAGTTCAAAGTTCAAAGAGGGGG
TTATAAATCTAAAGAATCCAGTTTGCAGAGTGCTCGAGATCTCGAGTGCA
CAACTCGGAAAAAGTTGAGTGCAGCTGTAAAATTGGAGGCTTTAAGCTTT
TTTCACATAATGCACGTAAAATTTTACTTTAGACCTTACGGAAAATCGTT
CGTAAGGCTGTCTTTTGAGAATTTCCCCAACATTATGACGTAGAGTTTTT
GTTGATTAAGACAGTGTAGACCTAAAGCTCTAAACCAGCATCTAATAACA
TGAAAACCAGAATATGATTCTTCAATGGGAATCAAAACTATAAAGTGCAC
TTACAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTGCGGGGCTT
TGGCTTAAGTGCTTGAGTGCAGCATAAGGGTACAAAGTCCAAATATGCGT
TTCCCGTAATTTTTGTATGAAGAGTTAGGTCTATACTGTAAGAGAGGGGG
TCTTACGTGACTTTTTCTTCCGTTCAAAACTTTTTGAACGTAAGCAAACT
CTACATACTGACATAAGGCCTTAAAACACTACGTAAGCTTAGAGAAATTC
CCCAATCTTCAAGGTCTTAGGTAAAATTTTACTTACATGTAAAAAAAGCT
TTAAGATGCAAGTGCAGACGGTTTTTTAACCCTAAGTGCAGAGTTCCACT
ATTTTCTCCTCAAGTGCGGCTAATTTTAGCAATTTTTTTGCCTTTTGGGC
CAATTTTTAAGGTATAGGTGCTCCTTGTCTGGACCAAAATTTATCAGGTG
CACTCTTGCAGTGTTGAATTGGTATTTCCAAATTTTCCAATAATTGACTG
AAAATACCAAAATACCAACATAAATAAGAGTCTTTTACCAATTAATTTTT
CCCCTGCCAATGGACCAATATCCTGTAAGCCCCCCCCCTAATATGCCAAA
TGTTTTGAACTCCAAATGAAAATAAAAACACAGCATTGATTTTTTTAAAC
CTCTATCAAAAACTGAATATAGGCTGTATGAATTTTTCAGGAATTGATTC
TTACTCTCACTCTTTGTCATTTTTAAATTTTTCAAAATTTTTTACATCGA
TATCTCCCAACTTCCCAATGGGCACAAGTTTGCAATCAAATTTTAACATT
ATCAAGAATTATCCCCATTTGCAATAATTATTTGAAAAGGGCTTCAAATT
TTTAGTTTGATTTAATATTGGATAACTAATTATATTGTTCTGAAAGTCTA
ATTAAGTATACATTCTTCTTTTTTATCTCAAAGGTATGGCACATTTCACA
ACGGTTTATCATGGACATATCTTACCAAATGGTATGGTTCCGTTGCATAC
ATCACAAGGACAAGAATTGCTTCAGAAAACAACAAAGAAAAATAAAATTG
TTGTGAATGATTTTAAAACTCAAATTGGCGACACTAACTGTGGCCCAACC
TCTCTAGCATTGGTTTTAAATGCGATCAATAGTTTTCATGTTAAACTTTC
AGATCCTGATTTAACGGACAAAGAATATGAAACCCTGATGGAAAAAATGA
ATGATGACAAGGAATTAATTCTGACTGAGTTTGATATTATTAACCATGGA
AAAGTGAAAGATTATTTTAGAGATATCAATATTGAAAAGAATGGGATGAC
TTTGTTACAGCTGGGACATGTTGCTACTCGTTTGGGATATGGTGTGAATA
CTTATTTTGCTTACAATAATTCAATAGAAATATCTGAGGATAAAAAAAGT
GAATTCAACGATTTGATTAGTTCACCAACTTTTCATACACTCGAAACATC
TAGTGATTTTGAAGCACTTGTTGAAAACCGTATTAGAAGGCCAGTAACTG
GCGTGATATTAAATTATGACATGTCAAAATTAGGTTATACATCGTTCCCA
GGACACTACAGCCCCATTGGAGCTTTGAATGATGAAATGATCCTTGTGAT
GGATGTATGGAAACAAACAAAACCTGCTTGGGTTGATAAGAAACTCTTGT
TTGATGCAATGTCAACTGTCGATAGTGATTGTGGATTTCCAAGAGGACTT
CTACATATTCATGAACTTTTATAGTATATTAGCATCACAACTATTGAATT
GTTTTACTTTGAAATTCTTTTATCACATGCCTAAGTTACTCCTAATTTTT
AAATCAATAAGTTCAAATGATTCTTTTTTGCTTTAATCTTTTCATGGATT
GGGCTCTTCCAGAAAAAATCCGTTCATGGGGGGTGGAGGATATATTAT Coding sequence (CDS) from alignment at sc0000380:300914..303511- >TCONS_00021277 ID=TCONS_00021277|Name=TCONS_00021277|organism=Clytia hemisphaerica|type=CDS|length=1662bp|location=Sequence derived from alignment at sc0000380:300914..303511- (Clytia hemisphaerica)
GTATGGCACATTTCACAACGGTTTATCATGGACATATCTTACCAAATGGT
ATGGTTCCGTTGCATACATCACAAGGACAAGAATTGCTTCAGAAAACAAC
AAAGAAAAATAAAATTGTTGTGAATGATTTTAAAACTCAAATTGGCGACA
CTAACTGTGGCCCAACCTCTCTAGCATTGGTTTTAAATGCGATCAATAGT
TTTCATGTTAAACTTTCAGATCCTGATTTAACGGACAAAGAATATGAAAC
CCTGATGGAAAAAATGAATGATGACAAGGAATTAATTCTGACTGAGTTTG
ATATTATTAACCATGGAAAAGTGAAAGATTATTTTAGAGATATCAATATT
GAAAAGAATGGGATGACTTTGTTACAGCTGGGACATGTTGCTACTCGTTT
GGGATATGGTGTGAATACTTATTTTGCTTACAATAATTCAATAGAAATAT
CTGAGGATAAAAAAAGTGAATTCAACGATTTGATTAGTTCACCAACTTTT
CATACACTCGAAACATCTAGTGATTTTGAAGCACTTGTTGAAAACCGTAT
TAGAAGGCCAGTAACTGGCGTGATATTAAATTATGACATGTCAAAATTAG
GTTATACATCGTTCCCAGGACACTACAGCCCCATTGGAGCTTTGAATGAT
GAAATGATCCTTGTGATGGATGTATGGAAACAAACAAAACCTGCTTGGGT
TGATAAGAAACTCTTGTTTGATGCAATGTCAACTGTCGATAGTGATTGTG
GATTTCCAAGAGGACTTCTACATATTCATGAACTTTTATAGTGTTGTCAT
TTTTCTATCTGTAGTGTGCCAGACACCAGAGGTATGGCACATTTCACAAC
GGTTTATCATGGACATATCTTACCAAATGGTATGGTTCCGTTGCATACAT
CACAAGGACAAGAATTGCTTCAGAAAACAACAAAGAAAAATAAAATTGTT
GTGAATGATTTTAAAACTCAAATTGGCGACACTAACTGTGGCCCAACCTC
TCTAGCATTGGTTTTAAATGCGATCAATAGTTTTCATGTTAAACTTTCAG
ATCCTGATTTAACGGACAAAGAATATGAAACCCTGATGGAAAAAATGAAT
GATGACAAGGAATTAATTCTGACTGAGTTTGATATTATTAACCATGGAAA
AGTGAAAGATTATTTTAGAGATATCAATATTGAAAAGAATGGGATGACTT
TGTTACAGCTGGGACATGTTGCTACTCGTTTGGGATATGGTGTGAATACT
TATTTTGCTTACAATAATTCAATAGAAATATCTGAGGATAAAAAAAGTGA
ATTCAACGATTTGATTAGTTCACCAACTTTTCATACACTCGAAACATCTA
GTGATTTTGAAGCACTTGTTGAAAACCGTATTAGAAGGCCAGTAACTGGC
GTGATATTAAATTATGACATGTCAAAATTAGGTTATACATCGTTCCCAGG
ACACTACAGCCCCATTGGAGCTTTGAATGATGAAATGATCCTTGTGATGG
ATGTATGGAAACAAACAAAACCTGCTTGGGTTGATAAGAAACTCTTGTTT
GATGCAATGTCAACTGTCGATAGTGATTGTGGATTTCCAAGAGGACTTCT
ACATATTCATGAACTTTTATAGTGTTGTCATTTTTCTATCTGTAGTGTGC
CAGACACCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021277-exon-sc0000380-1575043694:303471..303511 | TCONS_00021277-exon-sc0000380-1575043694:303471..303511 | Clytia hemisphaerica | exon |
| TCONS_00021277-exon-sc0000380-1575043694:300914..301878 | TCONS_00021277-exon-sc0000380-1575043694:300914..301878 | Clytia hemisphaerica | exon |
| TCONS_00021277-exon-sc0000380-1510915933:303471..303511 | TCONS_00021277-exon-sc0000380-1510915933:303471..303511 | Clytia hemisphaerica | exon |
| TCONS_00021277-exon-sc0000380-1510915933:300914..301878 | TCONS_00021277-exon-sc0000380-1510915933:300914..301878 | Clytia hemisphaerica | exon |
| TCONS_00021277-exon-sc0000380-1491911889:303471..303511 | TCONS_00021277-exon-sc0000380-1491911889:303471..303511 | Clytia hemisphaerica | exon |
| TCONS_00021277-exon-sc0000380-1491911889:300914..301878 | TCONS_00021277-exon-sc0000380-1491911889:300914..301878 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000380 | supercontig | sc0000380:300914..303511 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007719 | Phytochelatin_synthase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
| GO:0016756 | glutathione gamma-glutamylcysteinyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0010038 | response to metal ion |
| GO:0046938 | phytochelatin biosynthetic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0046938 |
phytochelatin biosynthetic process |
| biological_process |
GO:0010038 |
response to metal ion |
| molecular_function |
GO:0016756 |
glutathione gamma-glutamylcysteinyltransferase activity |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
The following BLAST results are available for this feature:
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