TCONS_00021271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021271
Unique NameTCONS_00021271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2001

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021271 ID=TCONS_00021271|Name=TCONS_00021271|organism=Clytia hemisphaerica|type=transcript|length=2001bp
AATACACGTAATTTTCAAACCTCATTGACTTTATTGATATATCGTGTTCG
GTTGTATAATTTCATAGTTGGTCAAGTAGTTTTTATAAACGCTTTTAACA
CTATATAAGACTTGGTAACGTGTACTTTATTGAGAAAATTCGTTTGTCTA
ATGGATTACTAACACAAGCTCGTAAACTTTCCTCCTTGATGTCTGACAAC
ACAAAGTCAAAGTTTATGGCAAAGAAGGTGTACCGCTGACATTGCAATGC
AAGAATAATACCGCGGGTCGATTCCAATCAGTAATATGGACAACAAACGC
ATATTCAAACTACAAATACACAGCATTCAGTTACAATCATCTTGGAGAaa
tgaaaattcataaaaactTTCGCAATAGGATTCACAGAGCTAGTGGTACC
TCTATCCAGTTATTGAACAGCAAATTGACCGATACTGGGAATTGGGAATG
CGATATCATTTTCACGTATAGGAAAGGAAATGAAATCAAAGAACGAAAAC
GAGTCAAGACATTAGCTAATTATGATGTCATCATTGTCAGTCCACCAACA
ATCAAGCATGTGTACCCACTCTCAGTCTCTGCACCATTAACATACAAAAA
AGAAGCAATCTGTGAAGCCTACAGTCCGAACCCTTTTACTTTAACATGGA
TCAAAATCCACGGCAATTTCACCAAAGACACTGTCATGGATATTCAGGAG
AACTTTGCAAATAACCAATACAAGAAGAGGAATATCATAACATTTAATAG
TTTGTCTGTAAATGATATCGGACAGTATCTATGtgttgcaaaaaatattg
ccgGACAGGTGTCAAGAGAAGTGGAGGTCAATGTTGAAGCAAAACCAATG
ATGCTTGTACCCAAACCTCGAGTCCATGTCAACATTGGACAAAGCGTTGA
GCTGAAATGCGTTGCTATGGGTTACCCTAAAGTCTCCTTCGAATGGTTAT
TTACTCACAACTACGAACAAATCCAACTCATCCCCACTACGAAGAAGGGT
GATTTTTCTGTTTCCCGAACACGTTTTCAATACTATGATGGCAAAGAACG
CTCCACCTCGGTGttgagaattgaaaatgttactCCAAAGCATTGGGGAA
CGTATCGATGTCAAGCAGAAAATAAGATTGGTTATGCAGAAGCTAAATTC
ACTATCGAAGGCCATAGTATCCCAGATGCTCCAGCCCTCCTCAATACAGA
AGATATCGGCAAACATCACATCACGTTGTTATGGTTACTAGACAAAGCTA
ACGGTCAAATCAAGTCCATTTTTATCGAGAAACGACAAATCGGTCAAAAA
GAATGGGACCGAGTGGAGGTACACAAAGCCATTACCAAATACACTTTCAG
TAATCTAGATGAAGATACGTTGTTTGAATTTCGGCTAAGAGCAACGAACG
TGGTCGGAACAAGCGCGTACAGTGAAATACAAAAACTGAGAACTAATAAA
ACTCCTATCGTTGcCAAAAGCAGTAAGAAAGATACACCAAAAGAAGAATC
AAAAACAAAGAACATTATTTTTGGTCTTGACATTATTGCATTGACAGCCA
TTGGTGGCGGAATACTCATCCTGATTACGTGCGTCTGTGCAGTGGGAATC
ATTGTAGTGCAACGGAAGAAATTTCGTTCtcagaaaaagagaaaaagtac
tGAAAAGAAAACACTAATTCAAATGAACAGACCGGCAAGTAGAACATCGG
TATGAAGGAAAGGGAGTATGAGATATCAAATGGGTGTCGACGGAGGAAGG
TTCGACGATGGCTTGACCTTGGTTGAAATAAAAGGTCTGTGATAAACGTC
CGTGGTCCGTGAAATATATCTTTATGTATGGCGTAATTTTCAAGGTGGCT
CATATCGGAGGTTCAGGttacttaacaaaagagaaaacCCAGTTTTGCAT
CGACTTTAAATGAGTGCTGATATGTCCAACttttagaaaaaagcaaaaag
attgGTCAATTAGACCTTCTTTGTCCTTTTCTTGGCtaaaatgtaaagaa
a
Run BLAST on NCBI

transcript from alignment at sc0000380:177779..184586-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021271 ID=TCONS_00021271|Name=TCONS_00021271|organism=Clytia hemisphaerica|type=transcript|length=6808bp|location=Sequence derived from alignment at sc0000380:177779..184586- (Clytia hemisphaerica)
AATACACGTAATTTTCAAACCTCATTGACTTTATTGATATATCGTGTTCG
GTTGTATAATTTCATAGTTGGTCAAGTAGTTTTTATAAACGCTTTTAACA
CTATATAAGACTTGGTAACGTGTACTTTATTGAGAAAATTCGTTTGTCTA
ATGGATTACTAACACAAGCTCGTAAACTTTCCTCCTTGATGTCTGTAACA
ATCTAAGTACTGCTACAAATTTTTGACTTGATTACGTTATCGTTTATCAA
GATAAAGATTTCAAACATCAAGAATATTTTGGCTTTCGAAAATATGGATA
TTTCTATTAGAAGTTACTTTTTGTTAACGATCTGTTGCATTTCGCTGATT
TCAGGATCCAGTAAGTATCATTTTGTTCATGAATTTAATTTAAATTTTTA
AGATTAAATATAAATGCTAATATGAAAGAAGCTTTCCAATGGAAAAATCT
GGAAATATCTTTAAAAATGCAATAATACTGTAAAACAGATGATTCTAAAA
TTATAGTATCTTTCCGAATTTTATTTCTCGTTTTTTGGGGGCCTTTATTC
GTTATTCGTTATTCGTTATTCGTTACTCCACACTTCTTCTCCATAAGAAA
GATACCCTGAAATTGATCACTACTTGGAAACTAATGACCTCTCAGACCTA
GACCGAAGGATGACTGACGATGGTGAAAAAAGTTCTCATCTCTCTGTAAA
AGCTTTTAAAAATCATATATTGTTCTTCATAGGACAACACAAAGTCAAAG
TTTATGGCAAAGAAGGTGTACCGCTGACATTGCAATGCAAGAATAATACC
GCGGGTCGATTCCAATCAGTAATATGGACAACAAACGCATATTCAAACTA
CAAATACACAGCATTCAGTTACAATCATCTTGGAGAAATGAAAATTCATA
AAAACTTTCGCAATAGGATTCACAGAGCTAGTGGTACCTCTATCCAGTTA
TTGAACAGCAAATTGACCGATACTGGGAATTGGGAATGCGATATCATTTT
CACGTATAGGAAAGGAAATGAAATCAAAGAACGAAAACGAGTCAAGACAT
TAGCTAATTATGATGTCATCATTGTCAGTAAGTTCAATTTAAGTCCAGTC
CACCGGTCAATATTTAATTCTCATAGTTCTTATATGACTAGCATACAGCA
CCCGAGTATCAATCTATTGAAGCAAGGTCGGCATTCATAATTTTGTGAAG
GGACAAAAACTTAAAATAAGAACAACCGAAGCACAGCTAAAAATTACTGC
TCCTTATAGAAATTCCTTAGTTTTTTTGTTTGTCACATATTTTTTTTTTA
ACTTCCAAACAATTTATTGGAGGATTTTACGACAACAATTTTGTGTTTTC
ATTTCGTTGAGTGGTAATTCTGTTTCCTGGACGAAAAATATTTCTGCTTG
TTTGTAGCAATATTTTGACAGAAGACACCTTTTTACCACATACCATCAAA
ATCATCTTTTGAACGTACAAAATACGTCTCGGGCAACTATTTCTATATCT
GGTAGAAGAGCACTTAGCACATTAATGACACTCGACATTCATCAAAGGGT
TCTTTATTAGCGAATATCGCGAACTTTGATAACGGTTATATCTTAAATCC
TACTTACGATTTCATCCAAAAAATACACATTACTGTAAAGCTAGCTTTTC
ATGCTATTCTTTTTATACGTCACATATTCACATTTAAAAGAGCATCTACA
AATGCAAGGAGACTTATCTTGAAGAAAAAGTCACGTCTTTGTAAAAAGCC
CTTCTATATTCCCACTGTCATAGCGAGTACTTGTGTTTTTCTGCAACGCA
GCCGGTTTTTTATTTTTGTAGACCCTTACTGAGAACGACAGTGAATCAGT
ACTTTTGCCGTCCTTGATTTTGCGGGCCAAAGCTGCGATTTGTTCAAAAC
CGTCTAAGTCACTTCGCCTTATCTTCAGATACATAACTTCACTAGAAGAC
ATTAGCGTAACGTACAATGCAGTCTTTCTTCCAATAAGAGTCAGTAAATT
TTGACTCAGTCTTCCCTGTTCTATTTTTTTCTAATTTTTTTAAGTTTTTC
CAATGAATAAATTGTTCATATTTCTATTTTTATCTTCTACCCGTTAAATT
CTACTTTTCAGGTCCACCAACAATCAAGCATGTGTACCCACTCTCAGTCT
CTGCACCACTAACATACAAAAAAGNTCAGGTCCACCAACAATCAAGCATG
TGTACCCACTCTCAGTCTCTGCACCATTAACATACAAAAAAGAAGCAATC
TGTGAAGCCTACAGTCCGAACCCTTTTACTTTAACATGGATCAAAATCCA
CGGCAATTTCACCAAAGACACTGTCATGGATATTCAGGAGAACTTTGCAA
ATAACCAATACAAGAAGAGGAATATCATAACATTTAATAGTTTGTCTGTA
AATGATATCGGACAGTATCTATGTGTTGCAAAAAATATTGCCGGACAGGT
GTCAAGAGAAGTGGAGGTCAATGTTGAAGGTAAGAGTATTTCCAGTTTCA
ACTCGAAATTAAATTTTCAACCTTTTCAACTGACAAATTCGAATCTTCAT
GGATAGTCTATTTCTCAGTGCAAGGCTAAGATCAGCTTTAGGTGAAATTT
CTGGTAGCAAAATAACTTCAAAAAAGGGAACGTGTTTATCCATGGCTGTA
ATCTTAAATTGATTTGCGATATTTACAAATTTTCCTATTAATACACCCCT
TTCTCACAGACCCGTGGAGGTAAAAGTAACGGACTGAAACTCGATTGGGA
TTGTTATTCCCATATTTTTTATGGCTGAGGATTTAAATTCTTTTGTTTTC
AAGTCAGAAAACTCAGTGGGGATTAGAAAAAAAGCATAATTTTTTGAAGT
GAAGATTGGTTTATTTGATTATTTTCAGTGGCGACAAAAATGGGACGATA
ATTTTCCACCCGGGGACGATATTTTTCCAGTGGGAAGGGTTCCCAGTGGG
TCTGTGAGAAGGGGATGTTTTAAATGGCTTCTTTTGATAAAATTATATTT
TTCTTTGCTTTCAAAAGGTTTGCACGCGACAAACCTCGTGTCAGATGCCA
CAAATGGCCTCCCTAAACTTGTTTTGAAAGTCATTTTGTCACAGAAACAA
TAACAAAGATGCTTTAAAGAAAATACCTACAAAAAGCATTGCTAAAATTC
AGAAAACAGAAATTTCCTTGCCTTGAGACATACCCTGAATTTGCGATGGA
CAAATTACTCAAAAGCTGATCCCAAGCTGATGTACGAGATTTTAATTTAT
TTCTGATAAAATTCCCTTGAGAACGGACCGAGTCCGAAACATGTCGGGAA
AAATCAAAATATAGTAGCCGCATTCTTTTTCACCGTTCAACAATTTATTT
CTGATATATTTCTGGCTTATTCCAAATTTTTTCTTGATTTGTGATTCATT
TTGATTGATTTTTGATTCGTGAAAAAGGTGTTCGAGATTTATACTTTGTG
ATTTACGAAGGAGGTAAATTCCAGGTGAAATTCCATCCTATCGGAAAACG
ATACTGAATTTCAATACCGACCAGAAACAGGTTTTAAGAACTCCAAGTGT
ATATTTGATTTCTAAATCGACATTGATAAGACTAGATTATGCTCTTTAAC
TCTTGCTTCAAGACTTCTTCTAATAGCATATTACTAATATCAGTGATCAA
AAAGATTTTGAAATTTCCTTTTCAGCAAAACCAATGATGCTTGTACCCAA
ACCTCGAGTCCATGTCAACATTGGACAAAGCGTTGAGCTGAAATGCGTTG
CTATGGGTTACCCTAAAGTCTCCTTCGAATGGTTATTTACTCACAACTAC
GAACAAATCCAACTCATCCCCACTACGAAGAAGGGTGATTTTTCTGTTTC
CCGAACACGTTTTCAATACTATGATGGCAAAGAACGCTCCACCTCGGTGT
TGAGAATTGAAAATGTTACTCCAAAGCATTGGGGAACGTATCGATGTCAA
GCAGAAAATAAGATTGGTTATGCAGAAGCTAAATTCACTATCGAAGGCCA
TAGTAAGTTGGTTTTCGTTTCCAAAACTATGTCTAAAATCATTTAAAGTC
GCTTTTTTATAGAATCTTCGATTCTCGATTTTGTCAACTTTGTTCTTTTT
TTAAAAATGTACACGAGAAGGAAGTATTCTAGCTGCATACTTAAATTTAA
CATAATTTTGGAGGATCTCGACAAGCAATACAATGATAGTAGATACACCA
GATCGATTGCCTGTCAAAAACTGTTTTCGAATCTTGACAGTTCTGAAGCA
ACTGTATCCTGTAAATTGTTTATTCGACGTTTCGTCACGACATTTATAGT
ATATGTATTCAAGAGAGTTTTTTTTACAAATTGACCTTTTCAACTGATTA
TGACACTTCATTGATAAACACCATCCTATTATGTCCCCCAGTGTTGTAAT
CCTACGCAACTTCGTGAATAACCAGCTATTCGTTCATCAGAAAAAGAAAA
AAGAACAGCGGCTGCTAAGATAAAATCAATCCAGGCTACTTTAGAACTTT
TGACAAGCTGAGTTCCAAGCTACGCGTTTTTTATAAGATCGTCCATCCTT
CGAACGTGTAGTCGGTTTTAATTTTTGCCCAATTTTTGCTTGGTAAAGAT
AAGCTATAAAATGTCATTGAAACTTGAGATATGTTTTCACCCGCGCGACC
TTTTTGAGTTGTTTATGAGGAGTGAAAGAAATGAAAGATGATTCCAACGC
TAACATTTACAATGGTACAATTTGATACCAAACGAGACTAAAACCTCTTA
ACTTAAATATGAAGACCGTTTATTTTTATATGATAGCTTTGCTAAATTTT
ACATTACAACCAACAGGAAAGGATTTGAAATTTAAGATAAAAAGAAGAAT
CATATTTCATAGGATTTCTCCAGGATCAACTAAACCGATAACATCACATC
TTTATTTTTAGGTATCCCAGATGCTCCAGCCCTCCTCAATACAGAAGATA
TCGGCAAACATCACATCACGTTGTTATGGTTACTAGACAAAGCTAACGGT
CAAATCAAGTCCATTTTTATCGAGAAACGACAAATCGGTCAAAAAGAATG
GGACCGAGTGGAGGTACACAAAGCCATTACCAAATACACTTTCAGTAATC
TAGATGAAGATACGTTGTTTGAATTTCGGCTAAGAGCAACGAACGTGGTC
GGAACAAGCGCGTACAGTGAAATACAAAAACTGAGAACTAATAAAACTCC
TATCGTTGGTAAGTTATCTAATACCCCATACACAACTTCAATTTCGGCTT
CAAACCAGAGTATCTTGATTTTTGGGCTATTTTGAGGCCTCAAAACCTTA
CTCAGTTGATTAACAAAACAAAAATGCGAACCTTTAAAATGCACTACTGT
TTCCCAGCTACAGGAGAAATCTGTTAGCTGTTAAGAAATAAGGTGGACTT
GGAGAGAATATATACAGATCTTAAGATTTACGACGTAGTGTTTAGCGGTC
GTAGCATGAAGGTAGAGCATCCAGCTATGGCGCGCAAGGTTGTGGGTCCG
ATCCCCAGCCGGGTCATACCAAAGATTCCTAAAATGGTACTTGATGCCTC
TCTGCTTGATACTCAGCAACTAAAGAGACGGATCAAGGGTAAGTGGAGAA
ATTCAGGGAAAGGAGTGGTGCCCTCCCCTACCTTTGGGTAAACAGCTAGA
GCTCGGGTAAATTAATGCGTGTCCAAATTTTCGTTATTTTTCCGGAGGCA
GTTCCACCCCTCCTAGCATAATAAATTATACCTTTAAAGAAGCGCATTAC
GATGTAGAACATTAAAATCGGTGTTACTTAAATTTAGTTTTTGCCAATTT
TGCGAAAAATCTGACGTCAGCAAAACTTGATTTTTAAATAACTCCAATTT
GGCTAATGGTATGAACATGAAATCTAGAGCAAAGTTGCACATCATTAAAA
GTATCATTTTTAAACAAAAGTTTTTTGAAATTTTGCTGATGTCAGCACTT
TATTGCAAATTTTCGTATTTTGCTGATTTCTGCTGACGTCAGCAAAATTT
GACAAAAAGGATTATGCAAAAATGTTTTTATTAATGATATGCAACTTTGG
TCCAAATTTCATGTTTATACCATTAGCCAAACTAGAGTTATTTAAAAAAC
AAATTTTGCTGACGTTCCCTCCTTTCCACGCATTAATTTACCCAAGAGAA
AAGGAAGCCTTTGGGTCGCCCTCGACTGTGGTCATAGGCTAAAAAAAAGA
TTACGGCTGTTTAAAATCATTTTTCGTTTTTATGAATCATGTGATAATAA
TTGTTTTCATTCTTTTTCAGCCAAAAGCAGTAAGAAAGATACACCAAAAG
AAGAATCAAAAACAAAGAACATTATTTTTGGTCTTGACATTATTGCATTG
ACAGCCATTGGTGGCGGAATACTCATCCTGATTACGTGCGTCTGTGCAGT
GGGAATCATTGTAGTGCAACGGAAGAAATTTCGTTCTCAGAAAAAGAGAA
AAAGTACTGAAAAGAAAACACTAATTCAAATGAACAGACCGGCAAGTAGA
ACATCGGTATGAAGGAAAGGGAGTATGAGATATCAAATGGGTGTCGACGG
AGGAAGGTTCGACGATGGCTTGACCTTGGTTGAAATAAAAGGTCTGTGAT
AAACGTCCGTGGTCCGTGAAATATATCTTTATGTATGGCGTAATTTTCAA
GGTGGCTCATATCGGAGGTTCAGGTTACTTAACAAAAGAGAAAACCCAGT
TTTGCATCGACTTTAAATGAGTGCTGATATGTCCAACTTTTAGAAAAAAG
CAAAAAGATTGGTCAATTAGACCTTCTTTGTCCTTTTCTTGGCTAAAATG
TAAAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011903XLOC_011903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021271-exon-sc0000380-1575043694:184393..184586TCONS_00021271-exon-sc0000380-1575043694:184393..184586Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1575043694:183510..183854TCONS_00021271-exon-sc0000380-1575043694:183510..183854Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1575043694:182108..182407TCONS_00021271-exon-sc0000380-1575043694:182108..182407Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1575043694:180585..180911TCONS_00021271-exon-sc0000380-1575043694:180585..180911Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1575043694:179379..179675TCONS_00021271-exon-sc0000380-1575043694:179379..179675Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1575043694:177779..178316TCONS_00021271-exon-sc0000380-1575043694:177779..178316Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1510915933:184393..184586TCONS_00021271-exon-sc0000380-1510915933:184393..184586Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1510915933:183510..183854TCONS_00021271-exon-sc0000380-1510915933:183510..183854Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1510915933:182108..182407TCONS_00021271-exon-sc0000380-1510915933:182108..182407Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1510915933:180585..180911TCONS_00021271-exon-sc0000380-1510915933:180585..180911Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1510915933:179379..179675TCONS_00021271-exon-sc0000380-1510915933:179379..179675Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1510915933:177779..178316TCONS_00021271-exon-sc0000380-1510915933:177779..178316Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1491911889:184393..184586TCONS_00021271-exon-sc0000380-1491911889:184393..184586Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1491911889:183510..183854TCONS_00021271-exon-sc0000380-1491911889:183510..183854Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1491911889:182108..182407TCONS_00021271-exon-sc0000380-1491911889:182108..182407Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1491911889:180585..180911TCONS_00021271-exon-sc0000380-1491911889:180585..180911Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1491911889:179379..179675TCONS_00021271-exon-sc0000380-1491911889:179379..179675Clytia hemisphaericaexon
TCONS_00021271-exon-sc0000380-1491911889:177779..178316TCONS_00021271-exon-sc0000380-1491911889:177779..178316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000380supercontigsc0000380:177779..184586 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0296002	0	0	4.40639	7.03575	0.133033	3.63567	0	0	1.80782e-09	0	0	0	0	0	0	0	0	0	0	0	0	0	3.83164	2.19835	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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