TCONS_00021132 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021132
Unique NameTCONS_00021132
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length856

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021132 ID=TCONS_00021132|Name=TCONS_00021132|organism=Clytia hemisphaerica|type=transcript|length=856bp
CATAGATTGTGATCTAAAGAAACTTCCACTGCGAGGAAAAGATGGTGCAA
GGGTTGTAGACGCAAAATATCATGCACATAAATTACGTTGTGAAGAATCA
GAGACAGTGTTCTTAAAAAGggaGAAAGGTTTGGAAAAGCAGTGTAGATA
CAAATGTAAAAGGTGTGGCCTGCTATTGTTCTCTCGACAcgataaaaaaa
ccaaaattaCTTTCATCGTTGATGGGGCTGTTGTGAAAGGTAAGACTGAA
GAGAATCCCTCACTATTGAAGAAACAACCGCAAGCTAAAAAGGTTATGGT
AAAGAAACATACGAAAGAAATGGGGAAATTTGGATCAGTCACTGTTTCAA
CCgtcgatgaagaagaagaagaactaGAAGCTGCTGAAATCGCGTCTTCT
TATGCACAAAATGCAAGGATCATTTCCCAACAATTAACAAAGAGAAGAAC
AGCTCAACAAAAACTTACAGAAGAAGAGGCAGGAAAAGCAAAGAAACCAC
GTGGTACACTGATCGACAAATGAGGTGAGAGATATCGCATCACGTGATTT
GGTTTATAACCAATGGTTGACCAGGAATTTTTGGCTTTTGTTTATTCAAT
GGAAATATTGAAGATGTGAATAACACATTGATAGAACAACATTGATATTT
ATTCAAAATCGTAAGACATTAATTTCACCAATGTAAACGCATATTGAAAT
TGTTATTAAGACTAATTGCGGCAGGCTCTgagtttcagaaaaaaactatt
GAGAAGTGGCTGTGGTACAAACAGAAAACATTGGTGAGATATTGTGTGTA
TTTCGACGGAATTATTTTTAAGCCAATGTTTTGTTGATTCTTGAACAGAG
AGAGAA
Run BLAST on NCBI

transcript from alignment at sc0000378:175893..180136-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021132 ID=TCONS_00021132|Name=TCONS_00021132|organism=Clytia hemisphaerica|type=transcript|length=4244bp|location=Sequence derived from alignment at sc0000378:175893..180136- (Clytia hemisphaerica)
CATAGATTGTGATCTAAAGAAACTTCCACTGCGAGGAAAAGATGGTGCAA
GGGTTGTAGACGCAAAATATCATGCACATAAATTACGTTGTGAAGAATCA
GAGACAGTGTTCTTAAAAAGGTACCTTTTTGAAAGTATATTGAATGTTGC
CCCTTTGGACCAAAATCGAAGGATAATAATGATGATGCATTGTTATCAAT
GGTTTTACGTTTATTTAAATTTGATTAATGAAAAGAAAAAAATATTACAA
CTACTGAAAACTCTGGAAAACTCCCTACCGTTTCTGGAGAACCATACTAA
AGTTCTGTGTTCAATTTGAATGTTTATTCTATTGAACAACAAATAAGATG
ATCTTTTGGTATTTACAAACTTTTCTTTAAAGCCAAAGTTTCCCCTGATC
AAGTTTGTCTTTGAAAATGTTTTCCTTGATTTAGAGTTTTATTTTATTAT
AATTTTCTTTGATTTGAAACTAAAATGTGCTTATGAATGATTCTTCTAAA
ATTTTTCTTTTTAGGGAGAAAGGTTTGGAAAAGCAGTGTAGATANTGTGC
TTATGAATAATTCTTCTAAAATTTTTTATTTTAGGGAGAAAGGTTTGGAA
AAGCAGTGTAGATACAAATGTAAAAGGTTTGATGTATTTATTTTCTTAAT
TTTATTCTTTATCTCCCAGCTTGAAATACCTTTTCCAGCTTTATTCCATT
CCTTCTCTTAGTTAGCGGCCCTAGCCTCTCTGTTTGATGCTCGCAGCAAC
TAAAAAGGGGGGTCAAGGCTAAGCTGAGAAATACACTTTCGACTGCCCTC
GACTGCAGTCAGAAACTTATTTTACTTAAAATTACTCCAAGTCTCTATAT
TACTTGTGCACCCTCCTACTAATCAAAGGGGGTTTTTGATTTCATTTTAC
TATACAGAACTCTCTTTTAAACTCATTAATGTTATGTCTATTTATATTTC
TCCTTTTCTTGCTAGGTGTGGCCTGCTATTGTTCTCTCGACACGATAAAA
AAACCAAAATTACTTTCATCGTTGATGGTAAGTTTATCGTCCATTCGTGT
GAGGAATTCAAAGTGAAAAAATTTAAAATTTTACCTAAGTATAAACTAGC
AGAATATGTATGACAATTTGAGGATGCTTTTTTCTTGATGTTACATTTTT
CATATTCAGGGGCTGTTGTGAAAGGTAAGACTGAAGAGAATCCCTCACTA
TTGAAGAAACAACCGCAAGCTAAAAAGGTTAGTATGATTATAGTGGAGTC
TCCATAACTTGAACTCGCACGGGGAACACAAATTTGTCCGAGTTAAAGAA
ATTTCGAATTATGGAGTAAAGTTTATAAGACATTGTTGATTAAAGGGACC
AGGAAACTTGTTCAAAGTCTTTCAAGTTAAGGAGACATTCGAGTTATAGA
GGTTCAAGTTATGAAAACTCCACTGTACAATAATTAATTTCTCTACAGCA
AGCCTCCCCACTATTTTAAACCAATTTCAATACTGTAGCATCCTTTTTCA
ACCTGCAATTGACTTCGGGTCGTTTGAAGGCACCCCATCTGGTTATAGAA
TTTAAAAAGACTTTGATTGAACCTTGCCTGGATATCATTTGAACCAAACA
ATTTGAGTAGTGGAGACAAATGAAGTTCTTGTTTATACCCAATTACCAAG
TAAGCAAAAAGAGTATTTGTATAAAATTCAGCAATGAGCACTCTCGGGTA
CCTAATAAGCGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAAAAAAAAAAATGAAAAA
CCATGAAAACGAAAAACCATAAAAACGTAAATTAACTTGTCACTCCATTT
TAACAACAAATTTAGGTTATGGTAAAGAAACATACGAAAGAAATGGGGAA
ATTTGGATCAGTCACTGTTTCAACCGTCGATGAAGAAGAAGAAGAACTAG
AAGCTGTAAGTGATGTCTATTTTACAGACCAAACTATTTCCTGACTAAAA
AATTATCTCCCTCCAAAAGTAAAGTATACCAAGGTTGAACTTATAAACAG
AAATAATGCGTTAATTAGCGTCCATTCAGGTCCTAAAACTCTTTATAGTG
GCTCAATCTCACCCCGCCTTAGCAAGATTGTGAATCCAGTTGATCTTGTG
TCAACTTTATAGATAGGATTGAAGTTAAAAGTTGATATTGATTAGCCTCG
AGCTAAGTACAATTTGGACTACTTTACATCAACTTTAAAGAAAAGAAACA
TAAACACATAAACTCCTCGGCTAAACGTCTTAGACTATGATCCTTTCGTA
GATAGATTTCTACTCTTTGTTTGAAACTTAAAGGGGCTTTCAAAGAATAT
ATTTTTTTTTACGTTCAAAGGCTGAAATCGCGTCTTCTTATGCACAAAAT
GCAAGGATCATTTCCCAACAATTAACAAAGAGAAGAACAGCTCAACAAAA
ACTTACAGAAGAAGAGGCAGGAAAAGCAAAGAAACCACGTGGTACACTGA
TCGACAAATGAGGTGAGAGATATCGCATCACGTGATTTGGTTTATAACCA
ATGGTTGACCAGGAATTTTTGGCTTTTGTTTATTCAATGGAAATATTGAA
GATGTGAATAACACATTGATAGAACAACATTGATATTTATTCAAAATCGT
AAGACATTAATTTCACCAATGTAAACGCATATTGAAATTGTTATTAAGAC
TAATTGCGGCAGGCTCTGAGTTTCAGAAAAAAACTATTGAGAAGTGGCTG
TGGTACAAACAGAAAACATTGGTGAGATATTGTGTGTATTTCGACGGAAT
TATTTTTAAGCCAATGTTTTGTTGATTCTTGAACAGAGAGAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011837XLOC_011837Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021132-exon-sc0000378-1575043694:180017..180136TCONS_00021132-exon-sc0000378-1575043694:180017..180136Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1575043694:179511..179552TCONS_00021132-exon-sc0000378-1575043694:179511..179552Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1575043694:179110..179171TCONS_00021132-exon-sc0000378-1575043694:179110..179171Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1575043694:178910..178977TCONS_00021132-exon-sc0000378-1575043694:178910..178977Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1575043694:176782..176871TCONS_00021132-exon-sc0000378-1575043694:176782..176871Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1575043694:175893..176366TCONS_00021132-exon-sc0000378-1575043694:175893..176366Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1510915933:180017..180136TCONS_00021132-exon-sc0000378-1510915933:180017..180136Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1510915933:179511..179552TCONS_00021132-exon-sc0000378-1510915933:179511..179552Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1510915933:179110..179171TCONS_00021132-exon-sc0000378-1510915933:179110..179171Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1510915933:178910..178977TCONS_00021132-exon-sc0000378-1510915933:178910..178977Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1510915933:176782..176871TCONS_00021132-exon-sc0000378-1510915933:176782..176871Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1510915933:175893..176366TCONS_00021132-exon-sc0000378-1510915933:175893..176366Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1491911889:180017..180136TCONS_00021132-exon-sc0000378-1491911889:180017..180136Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1491911889:179511..179552TCONS_00021132-exon-sc0000378-1491911889:179511..179552Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1491911889:179110..179171TCONS_00021132-exon-sc0000378-1491911889:179110..179171Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1491911889:178910..178977TCONS_00021132-exon-sc0000378-1491911889:178910..178977Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1491911889:176782..176871TCONS_00021132-exon-sc0000378-1491911889:176782..176871Clytia hemisphaericaexon
TCONS_00021132-exon-sc0000378-1491911889:175893..176366TCONS_00021132-exon-sc0000378-1491911889:175893..176366Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000378supercontigsc0000378:175893..180136 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.1291	31.4309	39.1387	45.4883	21.5447	12.8241	13.5556	15.9504	17.3148	16.3654	15.8643	15.0324	12.2722	11.2455	3.86206	5.91198	5.95892	6.96256	2.06457	5.29376	10.5204	8.05125	14.7355	11.0928	13.1925	19.7338	6.78159	6.16101	7.83169	8.61232
Blast
[Close]
BLAST of TCONS_00021132 vs. Swiss-Prot (Human)
Match: CX056 (UPF0428 protein CXorf56 OS=Homo sapiens GN=CXorf56 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.146e-41
Identity = 100/184 (54.35%), Postives = 128/184 (69.57%), Query Frame = 2 
Query:    2 IDCDLKKLPLRGKDGARVVDAKYHAHKL-RCEESETVFLKREKGLEKQCRYKCKRCGLLLFSR-HDKKTKITFIVDGAVVK-----GKTEENPSLLKKQPQAKKVMVKKHTKEMGKFGSVTVSTVDXXXXXXXXXXXXSSYAQNARIISQQL-----TKRRTAQQKLTEEEAGKAKKPRGTLID 517
            +DC L+KLP+R +D +RV+DA  HAHK    E+ ET++L+R +G+E+Q R KC +CGL LF +   K   +TFIVDGAVVK     GKT       +KQ   KKVM+ K TK+MGKF SVTVST+DEEEEE+EA E+A SYAQNA++I +QL     +KRR   Q+L E EA KAK  +GTLID
Sbjct:   41 LDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETMYLRRPEGIERQYRKKCAKCGLPLFYQSQPKNAPVTFIVDGAVVKFGQGFGKTN---IYTQKQEPPKKVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREVADSYAQNAKVIEKQLERKGMSKRRL--QELAELEAKKAKM-KGTLID 218
The following BLAST results are available for this feature:
BLAST of TCONS_00021132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CX0561.146e-4154.35UPF0428 protein CXorf56 OS=Homo sapiens GN=CXorf56... [more]
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