TCONS_00021096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021096
Unique NameTCONS_00021096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1150

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021096 ID=TCONS_00021096|Name=TCONS_00021096|organism=Clytia hemisphaerica|type=transcript|length=1150bp
ATTCATCGCGCGTGCGCAATCCACGTCTTGCGTATACAAATATGGTAGCC
GAGCTGTGGtcactaaaaaaatattttatagtgACTTTTTAGTGTCAATG
AATCTCGCTTACATGGATATGGGGCAATTGAGATGACGATGCTTGATCCA
CGTCTATGGTCGCTCCACTAAAAGATGAATCTATATTTTTCTTGAGTTCA
TTAATAAGGCACTTTTAATTTGAGCAACACATACTTTTTTAAACAAAGCA
CACGGCAGAGGCTCACACAGTTtggttttaaacttttttattgaaaataa
atggcTTTGTTGTTGACAATTATTGGTCGTCTTGTAGATGGCCTCCCATT
GGCAGCTTCTATGCCTTCTGATGAGCAGGGTAACAGAAACATTCAGGAAT
ATCAATCTCAAGCTAAAAACCTGTTCAAGAAACTCAACGAAAGATCACCT
GCCAAATGCAGTATCGAATCAGAACCTTACATTTTTCACTATTCGTTGGA
TATCCACAATGGTGTGTGTTATTTGGTGATGACAGAGAAGACATTCAGTA
AACGACAAGCATTTAGTTATTTAGATGATATTCAAAAAGAATTTGCTTTG
CAATACGGTGGTTATGTACCGACTGCTCGGCGACCCTACTGTTTCATCGA
ATTCGATACATATATGCAAAAAGcgaagaagaatttttcagatgGGAGAA
GTGGACGAAATCGTAATTTGGGTCGTTTGAATGATGAGTTACAAGGCGTA
CAGAAAATCATGATACAAAACATTGATGATGTGTTACAACGTGGTGAGAA
TTTGTCAGTTCTCGACGACAAAGCTGGTCAACTTCGTTTCCAaagtgaaa
aatacaaaaaggatgcaaaatttctgaatttaaGAACGGTTTATGCAAAA
TATGCAGTGATTGGTGTATTGTGTCTTGTATTTTTAATCTACATACGTTA
TTGGTGGCTATGAATTGGAATCACACCAAAAATAGTTAGAAagggttttt
attttttttcgtaggtattttttttctcatgtatttttatttttcaattt
ttattctgacaaatttgtatttaccaaaatttacattaatattaattaat
taatgaaaaagaaatatatttttagttcgAGGTACGGCAAAACAATCCTG
Run BLAST on NCBI

protein sequence of TCONS_00021096-protein

>TCONS_00021096-protein ID=TCONS_00021096-protein|Name=TCONS_00021096-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
MALLLTIIGRLVDGLPLAASMPSDEQGNRNIQEYQSQAKNLFKKLNERSP
AKCSIESEPYIFHYSLDIHNGVCYLVMTEKTFSKRQAFSYLDDIQKEFAL
QYGGYVPTARRPYCFIEFDTYMQKAKKNFSDGRSGRNRNLGRLNDELQGV
QKIMIQNIDDVLQRGENLSVLDDKAGQLRFQSEKYKKDAKFLNLRTVYAK
YAVIGVLCLVFLIYIRYWWL
Run BLAST on NCBI

transcript from alignment at sc0000378:141574..152190+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021096 ID=TCONS_00021096|Name=TCONS_00021096|organism=Clytia hemisphaerica|type=transcript|length=10617bp|location=Sequence derived from alignment at sc0000378:141574..152190+ (Clytia hemisphaerica)
ATTCATCGCGCGTGCGCAATCCACGTCTTGCGTATACAAATATGGTAGCC
GAGCTGTGGtcactaaaaaaatattttatagtgACTTTTTAGTGTCAATG
AATCTCGCTTACATGGATATGGGGCAATTGAGATGACGATGCTTGATCCA
CGTCTATGGTCGCTCCACTAAAAGATGAATCTATATTTTTCTTGAGTTCA
TTAATAAGGCACTTTTAATTTGAGCAACACATACTTTTTTAAACAAAGCA
CACGGCAGAGGCTCACACAGTTtggttttaaacttttttattgaaaataa
atggcTTTGTTGTTGACAATTATTGGTCGTCTTGTAGATGGCCTCCCATT
GGCAGCTTCTATGCCTTCTGATGAGCAGGTATAATTACCCTTCTTTATTC
TGTTCCAGGTTTTGGGGGATGACAAAACATTGATTCTTGATTGGGGTCAA
ATATTCTTGGGCCAAAAGATAGAAAATGTTTTGCTGTTTTGGCCCAAATG
GTCCAAAAATGTCTGCGTTATATTCAGACCATATGGTGGTTCGTATAGGT
CTTTTGATATTAgcgatgtcatgttgaataattacaGTAAGTTGGTccaa
tgtcgacatccctcttctaaccCAGACACCGCCAGacgtagcctgggaat
ccaagcgtcaAACTTTTtccacagtctagtttatgataattttgctgctt
gtttaacgcttggcgcaggtaactcgcctgcagggacatttttccctgca
atgcaggtttggcctgattggccagctttcggtgtattacttagcagtac
tttcacaagcattttgataatttcaatgcgcgcgcataatttatatggaa
aaagctgactctgcagaaaaaggaaaataaatgaaaatgaaaacatagat
tcatttagaaacaaaatggctgttggctggatgtCTAAAttcatgtggct
gatgttttgatgtggtttttagtagttttgaaagtccttagaacttgtga
aagagtttttatggtaagttgatacCTTCGATCACTTCTATTGTATTTGA
GTACTTTCCAGccttcgattttatcaaatatgtttctacctgttcttcta
tatctcagccttgaataatcgcttgtggcaaaaaaaagattgaagaagaa
aagacttaaaaaagttcttattaagtgatgctatAATTGCTTATTTAAAC
CTTAGACAGAGAGCGGAGGTAATATATGCtagttacttgtttgattgacc
ttcattataaaagaaagagaattaaaaaaaagaaaattgaagaattgaaa
aattggacacCCATCGGAATCGAACTCGGAGCCCCATGCATACGAGACAG
ACGATCTAACCACGCTTTGAGAGTGGCGAGGGAAAGTGTGAacttaataa
aaaagaaaaaggaaagaaagaaacgagaagaaaattaattcccgctttgG
TGTTATTATCGAAANCGTGaacttataaaaaagaaaaaggaaagaaagaa
acgagaagaaaattaattcccgctttggtgttattatcgaaacaaaagga
tcagtcatgccgaaattcctttccacacgtcagcaatctactttttataa
actttttataaatagaaaaactagatggtaaggaagattctaaaaaaaat
agctgttttcttGGACGACTACGTTTTATCAAAATCAGAAGaaggatgtt
gacattagactaACTTACGGTAAAAGCTCCCACACTGATTGATGTATAAT
GGGCCCCCAGCAGTGGTTTgcttgaatgcgtgaatgggctttttttgTTA
TGTGGatacttgaaaagaaattatgGGAATGcatatgaattgaaaaaact
tgtgtGAACATGAAAATTCGCTGATTGTGTGAATGTGTTAATCTGGGCTA
TTTTTTGTGTGAGTttgattttcccttttttcaatGATTATGCAAAATTC
CCTGATTTCCAAAATGTTTCCCGATcacttctaggctatattccaagcct
tattggagcaaatttgagctttttaaaatcctgagatcctaaggtcctaa
gtcttttAGGTCTTGTGCTAAAACTCAGAGTttaactctactttccaact
gtagtagtaaaaatcatttgtggtatTTAACATTTTGCAGGGAagtcccc
tttgtctcaaatattttgtccatgattataccgggtgcgccacaaaaaag
tttctctttttaaaactaattttctcgaaatctgaaaattctaaaagaac
cattcctgtcccattggaaagaagaaaaataaacttagattttgatgggt
catttattaaatttggttcattagatcgaaagttatgctcaaccgaataa
aaatgttactttctgaatgtgctcaaaaacgttaaaaattgacctatcaa
atcaaaaagaagcataattacatgatgcatcagtaGTTTCGTTttagtca
tcaaaaattataattagttgtctaaatgacctttagTTAAATAAAGGATG
GTTGAATTacattaaaaggaagaaaatttgtcgaaaaaagcccaaaattg
ttgtaaaattcagaaaaatacatcaaatattggTTTAGAGGTACATCCAG
Ccttcatagactttatccagtcgacaatcaaaaatatgaagaaaatctcg
gtaaaagtaaattaaaatgattttgaagaaGACTCTAAACCCTTTTGACC
Cattagtttcaaaatttatgggttttttaaattactgaaaaatgttctta
atcatgtaaagcctattgcgattgctagttttaaaataaaactttgatag
gtcgatttttaaagttttcgggcactttctgaaagtaacttttgatctaa
tacgccgaatttattaaatgacccctcaaaatttaagtttatctttcttc
tttccaatggaataggaatgattcttttcaaattttttgatttcgagaaa
atcagtttcaaagagagaaacttttttgtggcgcacccggtagttttTGA
AAGATACACAGAAAGCTAATAGATAAGAGCATAGTCATAAGATCAGAGTA
ACCTTGACCAACTCATTACAGTAATAGAGAAATTtgtaaaagttacaaag
aaagcaatttgatataaaagtgatctttgaaatattcttaaaagttagga
agaaagcgatttgataaaagcgaattttgaaacactcttaaaagtaacaa
agaaaatgattcgataaaagtgatcttagaaacactgtTAAAAGCTATGA
ATAGGCAATTAGAAAGAAAATTGAGTAGCAGGCAGGGATGTGAAGAAGAT
TTATTATCAAATCAACTTAATcgttttatttatctttttattcGGACTTC
ATGACTGATATAAAATGTTTTCAGTCTGTCAAATGGCTTTTTCAGCCGGA
CATTGACCGACTTATTTGCAACCCTGAATTATACAACATGACATCCTGTG
ATAGCAAAAGATCTATTAGTTGATATGTGTACTAAAAGTTTTTCTTGTCA
TTGTTTTAATACTGATGCTTGCTTCGTTCGCAACAACTTTGGCTTTGTTT
ATGTaagttttaaaactcaaaatcaaATGTGTAGCAAACATTCAAAGAGT
GCATGATACAGTTGTAGTGCTTCATAAATATGTGTTTTCCAAAAATAGTG
GACAAAGGCTTTTAAAGATTTCTTCAGTTATAATCCACAGGTAGAATAGA
ATAAACATGCAAAGGTGTTGAATACGTTGATTGGTAATTAATTTTTGTAC
AGCCGACTGGACGAAAACAGGCCGGCACGTTTTCTGTGTACACATGTAAT
CATTTAGGTGACCTCAATGTTTTATTGAATAACTGATTACCACAGTAAAA
TCGTTTTGATTATATTTTACATCATATtcatttcatgctttaatcaccat
ctgaagtatttttgtgctaacagacctcactagtAGTGCAACCACCAACT
TTGAAATCATATAACTGCaagatttatttcttttgtttatcagGGTAACA
GAAACATTCAGGAATATCAATCTCAAGCTAAAAACCTGTTCAAGAAACTC
AACGAAAGATCACCTGCCAAATGCAGTATCGAATCAGAACCTTACATTTT
TCAGTaagttttcttcttttaaatatttttaaagatttccaaaaatagaa
actttcctacttttaacaaaatcttattaagagtacttgtgcaaagtTTT
AGGGTCATAGATGGCCCAGATTAGGTTTTATGACTtaattgtgaaacatg
acataaaacccagctaaaatagcttaaaattcaaaattttaaagtgctga
tgatttttgaactatttattcaatcattttcaaattttgacacgtgatag
gtatTGACAATAtagatttgaaaaattaaaaaaaaaaattgaaaatgatg
acgtcaacatttgataactgatgatggcgtaagccgaaaagctttttatc
tttttgaaataaattttacttgtctaaaaagatgacgtcatcatttatga
cgtcatcaaattttgaaagttttactcatcttcagcacagattttaagaa
aaaatcttcatgggAAATGCAAAACcagcaattatgttaaagggcagtct
tttatctttcagaatcttcaaacagaatctaaatatctttattggttcaa
GTGTAATAGACATTTCTGTAAGCCATATATTTGAGCTTTTTTCCAACAGG
TGGAAGTTTTGGGAAGGCGTCATCGCTTTTTGAATAACGtcataaattct
ttttttctcccTGGAAATTTGTGTTAAAATGGAGAatatctgtaccaaat
ttcatggtcATAGCTCTCCNTTTTTTCCAACAGGTGGAAGTTTTGGGAAG
GCGTCATCGCTTTTTGAATAACGTCatgaattctttttttctccctggaa
atttgtgttaaaatggagaacatctgtaccaaatttcatggtcATAGCTC
TCctagataaaaaaaaatcgagggtggtagattcaaCCCCCCCCAGGgga
tacaaaaatcaaaaaagcttggCGCTAATAAGATTATGATAGTAGAGGGG
GACCCTTGCGATCCGCAGCATCCTTCGTGGGACCATCAATCATCATTTTT
ATTGAATTCAACTTTGAAAGATCATCAACATAGTAGGCACGCTCCTGGAT
TCTGGGGGGAGTGGTTTGAGAttctttttcggatttttaaaggttgggtt
AGGCTGATAAGATATTTGTAACCTATTTTTGGGGTCAGGAGTTTTGCCTA
TAACGTCAGTTTCTATCTTTAAAAACTCTTTGCCAGGTGTAATTCACAGG
CTTCCGGATCCAAAGGGTTGGTCCCCTGCTATTAAAGAACACTTTTTCAT
TCCTCTTTTTCCCCTCGCAGCTATTCGTTGGATATCCACAATGGTGTGTG
TTATTTGGTGATGACAGAGAAGACATTCAGTAAACGACAAGCATTTAGTT
ATTTAGATGATATTCAAAAAGAATTTGCTTTGCAATACGGTGGTTATGTA
CCGACTGCTCGGCGACCCTACTGTTTCATCGAATTCGGTAACTCATTTTT
TTTGTTGCTCTATTGTATTCACGTAGTACGCATGGTATCCTCCAGGTTTT
TCGGTCCCCCCATATGTGGCCTGAAACCCCCATTTGGTCTTCTCCCCCAC
CTACCCTTTTTCCGGGGTTCCCcccattggaaaaatatttttttatgaaa
atattcaCTTCCCCCTCCAGGGCAAAAGGTAATCCCCCCATCTTCTTggg
gggatgatcccatgaTACGTCATGTATGTGATTTTTCAGATGCACCCAAT
CATGTAGTTTCAAAGTCAATACAGTATGCCCCATGAAAAGCGGACGATTT
TTTTATAACGTGAAAtccttaaaaatcattttctagagTGGGTTAAAAGA
ATAATTGAAGTAAGATTAAAATTCCCTGACCAATCAATAGACGATGTTCA
ATTTCCAAGataattgaatatgtttttgagattgaaatattgAGTATGAA
GTCATTaagttttgcataaattatgaggattttagTTTATGTGAAAATGT
GCCCCTTTTTTTAGGGACACTGTATAGTCCCCCGCTGGTACTTTCGGGAC
CCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACTACGATAAATCTCTT
TGACTAACTCCATTTTAGCCCCCCCCTTATGGGTATACATTAGAAAATTC
TATAAGGTACTATAAGATAGATGCACTTGCTTCATTGtaattgtcaaaaa
ataaaataagatttATGCACTTTCTTCCCTGCTTTTGTTATAAACTCCAA
GGACATTTCTTTGGATTAGGAgtttattttgaattgatttaaTGACATCT
ATTGTCAGTTATTAGTTGATCaagttagctctagtttagacggtccACTT
TTCGCCATACCCCTATTATTCTATTTGCATATTAAGGCTGACAGAAAGTT
GGCTGTCTTAAGTCAATGCTCTTTTGATGTCAATGCAATGTTTGTTCACT
AtctttcaagcaaagatttaactgccaactttctGCCTACTTGCCTATTT
TAACAATTAGAATGGGCAGGggagaaagtcggccgtctaaactagagttT
ACAAGATGGCTTACGTGTATCACTTTAAGGTGGATTCCCCCTGACTCAAC
AGGgtatttcagagaaaaaatcaaaaaaaccttttttttgaacCAGACCC
TCAGGACACATCTATCTTACGCAGAATTTATCGTAGAATCAGAATATCAC
ATCCATTTGGTCTCAAATTTAATTGCTTTTtcggaaattgatttttcaga
GGCATGgtatataaaatttttgaaaaaaaaatcaacgttTTTTGTCATTT
GCCCCTGGGAAGGCAAAGCGCAATTGCCGACCGTTTCCGTACGCCCAAGC
GCCCATTTCGCGCCCCTAAAGCCTCCTTTTCGTGCAGATCCAATTTCGTG
ACTTTTCACACGggattgttttcaaaaatcgctCTTAGAAAGCTCAACAG
TCAGACCAAGCTGTATAATATTAGTGACTGAAGAAATCTCAAGAAATCTG
ACTGGTTAGTACTAAAACATGGGGAAACCAAGCTCTACTAAACGTGAAAG
AGCTTCTGGTAATGCAGGTCGTTGCACAAAAGCAAGATCAAAGGCTCTTT
ATGCTCCAAAGAAGAAAACTTACAACTTCGAGAAGAAGCGACCGACTGCG
ACTACGGCTTCAAAATCGTCAATCGACAACACTTCAAACAAGGAAAGTGA
ACTTCCAGAGACTGCATCTAGCTCTAAAATTGGAAGTACAACTATACCTG
AGACTCCTGAAAAATCAAGACCAACTGAAAATAACAGCAGTACTACAAAC
CCTGGTCCAAAAATGATTCACGGCTACCGTTTTGTGGATATGACGATATT
AGCGTCAATCTTCACCGTCCTTAGTTGCCCTGGATGTAATGGTGTACGTT
GTCTAAACCTCCATGAAAAtgatgttaaaaagaaaggactAGCAAGCCAT
CTTGTTCTTCAATGCTCTGTGTGTCTTTATGAGCAATCATTTTTCACTTC
GAAGCAAGTGCAATACCCGAATGAAGGACGCGGTGGTGCTAAATTCTTCG
ATGTGAATGCTCGGTCAATTTATGCTTCACGACAAATAGGTGGAGGCcat
gaacatttgaaaaagttttgcaCTTACATGAATATGCCTCCACCAGCTCT
TGAAGGAAGCTATAGCAAAATGACAAAGAAATTGAAGGAAGCGGCAAAAA
CTGTTGCTGAAAAAAGCATGTCTGATGCTGCCGCTGAACTGCGCGGGGAA
GCAGAATCAGCTGACGTTGGCGTTTCTATTGACGGGACATGGCAGAGAAA
GGGATATACTTCCATGAATGGTGTTGTGACTGCTATATCAGTGGATAATG
GAAAGGTTCTTGACACAGCTATCATGTCAAAGAATTGTAAAGGCTGTACC
AAAATGAAGTCTGTTAAAACCACTGATCCGCAACGATATGACGCGTGGAA
AGCTTCTCACAAATGTGGGCTCAATTTCAAAGGATCTTCCCCAGCAATGG
AAAAAGAGGGAGCAATAAACATTTACAATAACTCTACTAAGAAACATGGG
CTATATTACACTTCATTTTTTGGTGACGGTGATTCAAAATCGTTTACGGC
GGTACAAAATACCTATGGTCCGCGCAAGCCTGTAAAGAAACATGAATGTA
TTGGCCACTATCAAAAAAGAGTCGGAACTCGTCTTCGGAAATTGAAGAAG
TTAAACAAACGCCTAGGAGGTGCAGGAAGATTGACTGATGCCAAGATAGA
TTGTCTCCAAAATTATTTTGGCATCGCACTGCGTCAGAATGTGAATAATC
TTGACGAAATGGTGAAATCAACCAAAGCGTCAATGTTTCATGTTGCGGGA
TACCATGACAACTGCCCCAATCATAAAGATAGCTGGTGTCAATACAATCT
TGACAAATTAAATGGCAccaatttctacaaaaagaaagGCTTCCCTTTAG
ATGTACGTCAAGCAATTTTGCCAACCTACAATGATTTATGCACACGCGAA
AAACTCGAAAAATGCTTACACGGTCGTACTCAAAACGCAAACGAGAGTTT
TAACGGTATGATTTGGAACCGCATCCCAAAAGCCAACCATGTGGGTTTAC
ACATCCTCAGCTTTGCTGTCTATGATGCTATTTCTCATTTCAACAATGGT
GGTATAGCAGCCTACAACATCTTAACTAAAATGAACATGGAAGCAGGAAA
GTACACGGTCAAAGGTCTAAACCTTCAGGATTTGATCCGTAAACGACGGT
CAGCTTACCGAATGTCTTCTCCCCAAACAAAGAGAAGAAAAGTTATCAGA
CACctgagaaaaacaaaacaagacaaattaattgaaaaagaAGGGAAAAC
TTATGAATATGGTGGCTTTGAATGTTGATTTAATGTAGATTTGTAGAGAC
TTTATGTTTTTAGATTCAAAATATCAGTTATAATTTTTAGCgcgttttct
tatttttgcaaGTTTTTTCAACACGGGTCGGGGCATAATTTCTGAACCGC
TTTCTCAATCAAGCTCATTTTTTCAGTGAATGTTTATTGGAAATAAAAGG
ATGTTTTGGTTGTagagtttttttgaatttcaccaTAAAAAGTGTTTTAT
GTTTGAAgcaacttttgtatttttttgtattttttgccgGTCCGAAGAGT
TAAGCGGTCTGTTCTATGaggttcaaatttcaaaattttaattcaccCAA
AACATGCATCTATATAAGGGTGATCAACTCAGAAAGTTTCATTGGTATAT
CTTTTTAACTTCTCCGGAAATTGACCGACCCGTGTTTGACCTATTTTGGC
ACTTTTCGGTGCACGGCTCcggccgccattatggattttttcaaattttt
atttttttcattaattttcatCTAGTTTGATCATAAAAAgtcaatatcaa
aagataaaatcatttattttgcaattttggtcTAGCCAGGGGGAATCCAC
CTAAGAATAATCATTTCATTTCTAGATACATATATGCAAAAAGcgaagaa
gaatttttcagatgGGAGAAGTGGACGAAATCGTAATTTGGGTCGTTTGA
ATGATGAGTTACAAGGCGTACAGAAAATCATGATACAAAACATTGATGAT
GTGTTACAACGTGGTGAGAATTTGTCAGGTGAGTTTCATTTGGTAtttga
aggttttatttttccataaatgctcccgtttcatatcagacacggAGATA
TATatttatatcaggacagtgtctgccttttgttatattatgctgatata
agcaaaaataattttcttttcctctctctgaccaatcttgctccacacct
GTGTCAATccattttgaaaaagcttgtaaattaaaattgaggATGAAGCA
agcgatatcactcttatttaaaacgAAACCTTTCCTTATTGTAAAAagtt
gaacttttaaatttgttcttcAAAAACAATATTCATAATTTATGACTGTC
ATCTTTAAGACTTAGGGGTGTACAAGCGTTTCTTTGTTTGAGACAGAATT
CGGCATGTGTTTCTCTATATGGGCTATATGTAATCTTCAAATCTAAGTTA
TTTTGTCACACTCATATCGTAACACGCtttaatttttcttgatttcttaa
tttctatttttattttgttcattaGTTCTCGACGACAAAGCTGGTCAACT
TCGTTTCCAaagtgaaaaatacaaaaaggatgcaaaatttctgaatttaa
GAACGGTTTATGCAAAATATGCAGTGATTGGTGTATTGTGTCTTGTATTT
TTAATCTACATACGTTATTGGTGGCTATGAATTGGAATCACACCAAAAAT
AGTTAGAAagggtttttattttttttcgtaggtattttttttctcatgta
tttttatttttcaatttttattctgacaaatttgtatttaccaaaattta
cattaatattaattaattaatgaaaaagaaatatatttttagttcgAGGT
ACGGCAAAACAATCCTG

Coding sequence (CDS) from alignment at sc0000378:141574..152190+

>TCONS_00021096 ID=TCONS_00021096|Name=TCONS_00021096|organism=Clytia hemisphaerica|type=CDS|length=3315bp|location=Sequence derived from alignment at sc0000378:141574..152190+ (Clytia hemisphaerica)
atggcTTTGTTGTTGACAATTATTGGTCGTCTTGTAGATGGCCTCCCATT
GGCAGCTTCTATGCCTTCTGATGAGCAGGGTAACAGAAACATTCAGGAAT
ATCAATCTCAAGCTAAAAACCTGTTCAAGAAACTCAACGAAAGATCACCT
GCCAAATGCAGTATCGAATCAGAACCTTACATTTTTCACTATTCGTTGGA
TATCCACAATGGTGTGTGTTATTTGGTGATGACAGAGAAGACATTCAGTA
AACGACAAGCATTTAGTTATTTAGATGATATTCAAAAAGAATTTGCTTTG
CAATACGGTGGTTATGTACCGACTGCTCGGCGACCCTACTGTTTCATCGA
ATTCGATACATATATGCAAAAAGcgaagaagaatttttcagatgGGAGAA
GTGGACGAAATCGTAATTTGGGTCGTTTGAATGATGAGTTACAAGGCGTA
CAGAAAATCATGATACAAAACATTGATGATGTGTTACAACGTGGTGAGAA
TTTGTCAGTTCTCGACGACAAAGCTGGTCAACTTCGTTTCCAaagtgaaa
aatacaaaaaggatgcaaaatttctgaatttaaGAACGGTTTATGCAAAA
TATGCAGTGATTGGTGTATTGTGTCTTGTATTTTTAATCTACATACGTTA
TTGGTGGCTATGAatggcTTTGTTGTTGACAATTATTGGTCGTCTTGTAG
ATGGCCTCCCATTGGCAGCTTCTATGCCTTCTGATGAGCAGGGTAACAGA
AACATTCAGGAATATCAATCTCAAGCTAAAAACCTGTTCAAGAAACTCAA
CGAAAGATCACCTGCCAAATGCAGTATCGAATCAGAACCTTACATTTTTC
ACTATTCGTTGGATATCCACAATGGTGTGTGTTATTTGGTGATGACAGAG
AAGACATTCAGTAAACGACAAGCATTTAGTTATTTAGATGATATTCAAAA
AGAATTTGCTTTGCAATACGGTGGTTATGTACCGACTGCTCGGCGACCCT
ACTGTTTCATCGAATTCGATACATATATGCAAAAAGcgaagaagaatttt
tcagatgGGAGAAGTGGACGAAATCGTAATTTGGGTCGTTTGAATGATGA
GTTACAAGGCGTACAGAAAATCATGATACAAAACATTGATGATGTGTTAC
AACGTGGTGAGAATTTGTCAGTTCTCGACGACAAAGCTGGTCAACTTCGT
TTCCAaagtgaaaaatacaaaaaggatgcaaaatttctgaatttaaGAAC
GGTTTATGCAAAATATGCAGTGATTGGTGTATTGTGTCTTGTATTTTTAA
TCTACATACGTTATTGGTGGCTATGAatggcTTTGTTGTTGACAATTATT
GGTCGTCTTGTAGATGGCCTCCCATTGGCAGCTTCTATGCCTTCTGATGA
GCAGGGTAACAGAAACATTCAGGAATATCAATCTCAAGCTAAAAACCTGT
TCAAGAAACTCAACGAAAGATCACCTGCCAAATGCAGTATCGAATCAGAA
CCTTACATTTTTCACTATTCGTTGGATATCCACAATGGTGTGTGTTATTT
GGTGATGACAGAGAAGACATTCAGTAAACGACAAGCATTTAGTTATTTAG
ATGATATTCAAAAAGAATTTGCTTTGCAATACGGTGGTTATGTACCGACT
GCTCGGCGACCCTACTGTTTCATCGAATTCGATACATATATGCAAAAAGc
gaagaagaatttttcagatgGGAGAAGTGGACGAAATCGTAATTTGGGTC
GTTTGAATGATGAGTTACAAGGCGTACAGAAAATCATGATACAAAACATT
GATGATGTGTTACAACGTGGTGAGAATTTGTCAGTTCTCGACGACAAAGC
TGGTCAACTTCGTTTCCAaagtgaaaaatacaaaaaggatgcaaaatttc
tgaatttaaGAACGGTTTATGCAAAATATGCAGTGATTGGTGTATTGTGT
CTTGTATTTTTAATCTACATACGTTATTGGTGGCTATGAatggcTTTGTT
GTTGACAATTATTGGTCGTCTTGTAGATGGCCTCCCATTGGCAGCTTCTA
TGCCTTCTGATGAGCAGGGTAACAGAAACATTCAGGAATATCAATCTCAA
GCTAAAAACCTGTTCAAGAAACTCAACGAAAGATCACCTGCCAAATGCAG
TATCGAATCAGAACCTTACATTTTTCACTATTCGTTGGATATCCACAATG
GTGTGTGTTATTTGGTGATGACAGAGAAGACATTCAGTAAACGACAAGCA
TTTAGTTATTTAGATGATATTCAAAAAGAATTTGCTTTGCAATACGGTGG
TTATGTACCGACTGCTCGGCGACCCTACTGTTTCATCGAATTCGATACAT
ATATGCAAAAAGcgaagaagaatttttcagatgGGAGAAGTGGACGAAAT
CGTAATTTGGGTCGTTTGAATGATGAGTTACAAGGCGTACAGAAAATCAT
GATACAAAACATTGATGATGTGTTACAACGTGGTGAGAATTTGTCAGTTC
TCGACGACAAAGCTGGTCAACTTCGTTTCCAaagtgaaaaatacaaaaag
gatgcaaaatttctgaatttaaGAACGGTTTATGCAAAATATGCAGTGAT
TGGTGTATTGTGTCTTGTATTTTTAATCTACATACGTTATTGGTGGCTAT
GAatggcTTTGTTGTTGACAATTATTGGTCGTCTTGTAGATGGCCTCCCA
TTGGCAGCTTCTATGCCTTCTGATGAGCAGGGTAACAGAAACATTCAGGA
ATATCAATCTCAAGCTAAAAACCTGTTCAAGAAACTCAACGAAAGATCAC
CTGCCAAATGCAGTATCGAATCAGAACCTTACATTTTTCACTATTCGTTG
GATATCCACAATGGTGTGTGTTATTTGGTGATGACAGAGAAGACATTCAG
TAAACGACAAGCATTTAGTTATTTAGATGATATTCAAAAAGAATTTGCTT
TGCAATACGGTGGTTATGTACCGACTGCTCGGCGACCCTACTGTTTCATC
GAATTCGATACATATATGCAAAAAGcgaagaagaatttttcagatgGGAG
AAGTGGACGAAATCGTAATTTGGGTCGTTTGAATGATGAGTTACAAGGCG
TACAGAAAATCATGATACAAAACATTGATGATGTGTTACAACGTGGTGAG
AATTTGTCAGTTCTCGACGACAAAGCTGGTCAACTTCGTTTCCAaagtga
aaaatacaaaaaggatgcaaaatttctgaatttaaGAACGGTTTATGCAA
AATATGCAGTGATTGGTGTATTGTGTCTTGTATTTTTAATCTACATACGT
TATTGGTGGCTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011827XLOC_011827Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021096-exon-sc0000378-1491911889:141574..141951TCONS_00021096-exon-sc0000378-1491911889:141574..141951Clytia hemisphaericaexon
TCONS_00021096-exon-sc0000378-1510915933:141574..141951TCONS_00021096-exon-sc0000378-1510915933:141574..141951Clytia hemisphaericaexon
TCONS_00021096-exon-sc0000378-1575043694:141574..141951TCONS_00021096-exon-sc0000378-1575043694:141574..141951Clytia hemisphaericaexon
TCONS_00021096-exon-sc0000378-1491911889:145567..145676TCONS_00021096-exon-sc0000378-1491911889:145567..145676Clytia hemisphaericaexon
TCONS_00021096-exon-sc0000378-1510915933:145567..145676TCONS_00021096-exon-sc0000378-1510915933:145567..145676Clytia hemisphaericaexon
TCONS_00021096-exon-sc0000378-1575043694:145567..145676TCONS_00021096-exon-sc0000378-1575043694:145567..145676Clytia hemisphaericaexon
TCONS_00021096-exon-sc0000378-1491911889:146944..147110TCONS_00021096-exon-sc0000378-1491911889:146944..147110Clytia hemisphaericaexon
TCONS_00021096-exon-sc0000378-1510915933:146944..147110TCONS_00021096-exon-sc0000378-1510915933:146944..147110Clytia hemisphaericaexon
TCONS_00021096-exon-sc0000378-1575043694:146944..147110TCONS_00021096-exon-sc0000378-1575043694:146944..147110Clytia hemisphaericaexon
TCONS_00021096-exon-sc0000378-1491911889:151199..151351TCONS_00021096-exon-sc0000378-1491911889:151199..151351Clytia hemisphaericaexon
TCONS_00021096-exon-sc0000378-1510915933:151199..151351TCONS_00021096-exon-sc0000378-1510915933:151199..151351Clytia hemisphaericaexon
TCONS_00021096-exon-sc0000378-1575043694:151199..151351TCONS_00021096-exon-sc0000378-1575043694:151199..151351Clytia hemisphaericaexon
TCONS_00021096-exon-sc0000378-1491911889:151849..152190TCONS_00021096-exon-sc0000378-1491911889:151849..152190Clytia hemisphaericaexon
TCONS_00021096-exon-sc0000378-1510915933:151849..152190TCONS_00021096-exon-sc0000378-1510915933:151849..152190Clytia hemisphaericaexon
TCONS_00021096-exon-sc0000378-1575043694:151849..152190TCONS_00021096-exon-sc0000378-1575043694:151849..152190Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021096-proteinTCONS_00021096-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000378supercontigsc0000378:141574..152190 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.2551	28.1257	11.5685	11.0674	23.5914	19.7672	125.93	129.693	96.1387	88.4664	54.6604	52.3281	29.4375	24.5298	43.6306	44.5938	70.1911	62.3415	16.2317	22.4374	46.9145	42.5127	57.1914	58.1655	31.1689	38.3304	50.0945	32.5518	122.568	80.4521
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001388Synaptobrevin
IPR010908Longin_dom
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00021096 vs. Swiss-Prot (Human)
Match: SC22B (Vesicle-trafficking protein SEC22b OS=Homo sapiens GN=SEC22B PE=1 SV=4)

HSP 1 Score: 233.417 bits (594), Expect = 2.963e-74
Identity = 115/218 (52.75%), Postives = 153/218 (70.18%), Query Frame = 1 
Query:  307 LLLTIIGRLVDGLPLAASMPSDEQGNRNIQEYQSQAKNLFKKLNERSPAKCSIESEPYIFHYSLDIHNGVCYLVMTEKTFSKRQAFSYLDDIQKEFALQYGGYVPTARRPYCFIEFDTYMQKAKKNFXXXXXXXXXXXXXXXXELQGVQKIMIQNIDDVLQRGENLSVLDDKAGQLRFQSEKYKKDAKFLNLRTVYAKYAVIGVLCLVFLIYIRYWWL 960
            +LLT+I R+ DGLPLAASM  DEQ  R++Q+YQSQAK LF+KLNE+SP +C++E+    FHY   I  GVC LV+ E  F K  AF+YL+D+  EF  Q+G  VPT  RPY FIEFDT++QK KK + D  + RN        ELQ VQ+IM+ NI++VLQRGE LS LD KA  L   S+KY++DAK+LN+ + YAK A + V  ++ ++Y+R+WWL
Sbjct:    2 VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYI--IEQGVCDLVLCEAAFPKTLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSCARRNLGSINT--ELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMHSTYAKLAAVAVFFIMLIVYVRFWWL 215
The following BLAST results are available for this feature:
BLAST of TCONS_00021096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC22B2.963e-7452.75Vesicle-trafficking protein SEC22b OS=Homo sapiens... [more]
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