TCONS_00021056 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021056
Unique NameTCONS_00021056
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1895

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021056 ID=TCONS_00021056|Name=TCONS_00021056|organism=Clytia hemisphaerica|type=transcript|length=1895bp
ATTTTCGAATCACGTTTGCAACATcacatttcatttttcaagatggcggc
tcattTCGTCCCTCCTGTAATTCAAGACAATTCAAATGGCTGGGGTCCAT
GTACAGCCTCTAACGAATTTAAAGATATACCATATCAGCCATTTTCCAAA
GGAGATAGAATTGGAAAGATTTCTGATTGGACTGGACAATTCCAAGACAG
AAATAAATATCACTCTCAGTTTGCTGCTGGCAATCAATATGCATATTACC
ATGAAGGTGATGAATCTTCCTTCCAACTGGTGGACACTTCAAAACCACAG
AAGACTGCTTACCAAAAGAATCGCCAAAGATTCAATAATAACCGTATGAA
GAGGGAACGTGAGAAACAACAAAGGAAAGAGGCCATTATGATGGGCCAGA
CAACTCGTGTTAAACTTCAAAAGAAGAACGCAAAGAATAATTATTATCAC
CGACGTTGGAATGATCGCCAACAGGTTCAAAAGAATCGTGCAGCTTCAGT
TGTTGTGAAAGATGATTGGAAGGTTGTTGAAGAATTCGATTTTCCAAGGC
TTGGTAAATTGAAATTGCCTGACATCAAAGATCCCGTTGACTTGTACAAT
TGTGGTACTATGGAACAATACGACAAAGCTTACGATCGTGTCACTACCAA
AAATGAACGTGTCTTGGAACAGAACAGTCGCACGTTCCACCGTGTCACTA
CCACAGACGATCCGATCATAAGAAAATTGACCAGTAAAGGAAATGTGTTT
GGTACTGATGCCATCATCTCTGCTCTCATGTGTTGTACACGTTCTGTAGC
CTCTTGGGACATCATTGTGCAGCGAGTTGGGAAGAAACTCTTCTTCGATA
AACGAGATGATTCCGACTTTGATTTGATGTCAGTTTTCGAGACTACCCAA
GAAGAGATGAAGGAAGAAGGCATCAACAGCCCCAACAATTTGGCCAGTGA
AGCCACCTACATCAATCAGAATTTCTCACAACAATGTCTGAAGAAAGGAG
ACACTTTGAAATATGATAACCCCAACCCTTTCGCTGAAGATGACGGTGAT
GAAGTCGCCTCTGTTGGATACAAGTATCGTAAATATGATATTGGTAATGG
AATTGATTTGGTAGTTCGTTGTGAACACGATGCATACTTGAAAACACCTG
CCGGCGTTCAACAGTATTATAGTATCAAAGCTCTCAACGAATTCGATCCA
CGGATCAGTAAGATCGagtggagacaaaaattggaCTCTCAAATTGGTTC
CGTTCTTGcaattgaattgaaaaacaatagcaacaaaaTTGCCAAGTGGA
CCTGTAATGCTATCCTTGCTTCTGCTGACATCATGAAAATCGGTTACGTC
TCCCGTCACACGCCGAACGATACAACCCGTCACGTCATTTTGGGTACACA
ACAATTCAAACCCAACATGTTTGCTCAGCAAATCGCCTTGGACATGGACA
ATTGTTGGGGTATCTTGCGTGTGATCGTTGATACTTGTCTCAGCTTACCT
GAAGGCAAATATCTCCTCTTGAAAGATCCCAATAAGGGAGTTGTTCGTTT
GTACGACATTCCAGACAACACTTTCGAATCTGACGAGGATGAAGACTCTG
CTGATGACGaaGACGAAGACGAAAGCgaggaagaagaaaaataattatca
taaattatattttgacgaataaattattttttttgaaaatagcaATTTAC
AATTTACAACATTTAGTATCTAGGAGGCCCGTCACTTTGAAAGGAAAGAA
ACGAATCGCGATATTTGGAAATGTTTATTGCTTGCTTATTGTTCCGGAGA
AATGGGATGCAAAAGTTCCGTGCCCGGTCCAGCCTCTTCAAAAGGTCTCC
CTTGCAGAGAGCTCAGAGAAGCAACAAAATTAAAGCTAATCAAAG
Run BLAST on NCBI

transcript from alignment at sc0000377:76036..90258-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021056 ID=TCONS_00021056|Name=TCONS_00021056|organism=Clytia hemisphaerica|type=transcript|length=14223bp|location=Sequence derived from alignment at sc0000377:76036..90258- (Clytia hemisphaerica)
ATTTTCGAATCACGTTTGCAACATCACATTTCATTTTTCAAGATGGCGGC
TCATTTCGTCCCTCCTGTAATTCAAGACAATTCAAATGGCTGGGGTCCAT
GTACAGCCTCTAACGAATTTAAAGATATACCATATCAGCCATTTTCCAAA
GGAGATAGAATTGGAAAGGTATAATTAATTTTGACTTGATTAATGAATTG
CCTTGCAGTAGCTTTAATTTGATTTTTAATTTTCTGACTTTTGTATATCA
AAACAAAAGTGATGGGCATATTTCTGGTCAAAAAATACCATAGAAGATCT
TTCAAATTCAGTAGGAGTGGAGGGAATGACATTAAAAGTTCTAAAATAAT
GTGTAAGGCGGTCATCGAAAAAATGCTCTGTTCGCATTGCAACGGGTGTT
AAAATGCATGCGGGCGGACGGGCGGTCAAAAACATTCCCGGTTTTTTTTT
TTAATCACGCCAGTAACTCAGGGCCGGGTGGTAATGAGAGCAAAACAATT
TTTCGACGGTCGTCAGAGCAATTCAATTGAGAAAAAAGCTATACTTTAAA
AGAACAAATTGCTTTTCCCAGATTTTTTTCCGCATCTCCGCACCGGAAAA
TCAGTGCAAAATTTGATGCGGGCGGGTGACGCGAATAGAACAATTTTTCG
ATGACTGCCTAAAAAGATCCTGCATCGATGCCAAAATACAGCCAGAAAGA
GAGATACCATATAAATAAATCCCTGTTGTAAGTTTGTTTAGGCCGATGAA
ATTTACATATGAGTTTACCGTCGTGAACTTACCCAAAAATAGATGCGGCA
TGATTTCATTATTCATTATTCATTATTTTCCCAACAGCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTTTAGGAATTTTGAAGA
TAATGAAATTTTCATGCGGGTGCTTTTTAGAGATGCGGGCGGCCGACGGT
AAACTCATATGTAAATTTCATCGGCCTTACATATGACTCGATTTTGCTAT
CTACATTTCCAACAAAAACAAGTTGAAAACAAAACTAAACGATGCAGAGT
GGGCCTACTTAACGCAAGGGTGTCAAATACCATGTGTTCAATAATGAAAT
AAACTTTTCTTTCTAAAACGGCGGCAATAATTGCCGAAAACGGCAAATTT
CATTTATTCACTTTTTTTATTTTTCTGCTGATTCAGCATTTTGTCATTGA
AAAAATTGCCCTTTTCGCCAATAATTGCTGAAAAGAGCAATAATTGCCAC
ATATTGTCCTCCCCCCTGGATTCAGGGGGGAATGGGTTTTGAGGTCAAAA
GGACGTATAGGGGGAGAGAATTTTTTTTGAAGCCAGGGCGGGGGAAACGA
GGGGGAGGGGAATGGAAAATTTTCATTCTGCATGGGGGGGGGGAACTCAC
CAAAATCAATTCAAAATTGAAAAACATCTGGTTTTATGAGATGATGTTGT
GATCTGATCACTTATTTCAACCAGCAATATTACGGTTTGAAAACAACTAT
CCTTTCCATTTATTCTTGAATTAGAACTACCTTAGGGAAAACAATAAGTG
TTAAAATCATCAAATTACAGCTTTTTATGCTTGAGGGGGGCAGAGAAATT
TTTGGAGGCAGGGTGGGGAAAAATGAGGGAGGGGAATGGAAAATTTTCCT
TCTAAGTATGGGGGGGTAGACCCTGAAGGACACTATGTGCCATTTTTATA
TTTAACACCCAACTGTCCGGTGTTCCGTAGCACAAATTTCAGCGATTGGT
CTGCAGCGGAATGAACCTCGGAACGTTCCAGTGCACTTCTGCTAACGCAC
GTATTTAAAAAAAATCAGCCGAATCATGGTAGTTTCGATATTTCAACCAG
TGATGCTTTCGAATAAATGTGACAAATTCAATTTCATTAGTGGCTGAACC
ATCATCCTCAAAGACTATACCATCACCTGGAGAAAGATATCTTTTTGTAA
CCATTTTTAAGCAGTTTTTAAGAACGTGATAAAAATCACTTGCTCGGGAA
CTTTCCGCAGAGAGAAATATTGTTTTTTAGCTGCTCCGGAAGTTTCCGAA
GCGCCGGGAGGGTCCTCTTTAATGCCTTTTTAATGTCGAAGAGCAACCGT
TTTCAGAAAATTCTTATTTTTATCCAACGATTCGCGAAAGTTTATGCATG
CGAAAAACAATTTTTCCTCAAATTCGCGAAAGTAAAATAATGTTGCAAAT
TTCGCAATTTTTCGAACTCGCAAAAGTTTCTGCCTGCGATAGTTTGTACT
CTTAAAGTAGTCTGTTACCCCCCCCTCTGTGGACGACATGAATTTTTCGA
AACAATTTACTATTGAAAAACTTCAGGTTTTCCGATACTTAGCATAAAAA
TAGAGCAGATTTAATGGATTTTCCAATATGGATAAGGGGAGCCGTCCATA
TTCATTTGACAACGCGAAACGTCAAATTGACGTTATGAGGGGGTGGGAGG
TTTTCAAAAGTTAGGTTTGACGTTATAAGAAATCAAAGGTACACCTTTTT
GTGAAAATCGCAAATATTGGTAACCACCAACCACACTATACTTTATAAGC
TGTCGAAAATATATTTGTGTATGGATTACATGAAAGTATCCCATTGGTTC
GCGCTATGATATCATTACATCATATTTTTATTGTTTGATCGAGCAAACCA
CATCGCACAAGTGGGCAAAGAAGGTGGTACGCCTAAAGCACGGCACTGGA
ACTGCCCAATGAACCTACCCAGCTCCGCTCGCAGCTCTATTCTACCATTG
TAAAATCTCATATTTGCTGCACGAGTATTTTTGGCAAGTTAACTCGCCAA
CAAAATTGTGAATGAATAAAATGGCGTGTTTGGATAATAAAAATTCATGC
GAGATCACAAATTTTAAGATTGCAGGAATTCAGATGTTTCTTAACTTGGT
GGCTGCTCTAAATGTGTAATCTTAAATTTGATAATTATATCAAACATACA
TAATTATGCATGACCTTCTTAAGGGACACCTTGTAGGGATTCACGGAGTG
GGGATGAATAAATTGGAAGTGGTCACAAGTGTTTGTAACATGTGTGATGA
TAATGTTCAAGCTGAAAATTGAAATTGAAAAAATACTAAATATTGATCAC
AAGGAAAAAGCTTAAAAGTCTAAAGTAAAAACTAAAATATAAGCATGTTT
GAATGTATAAATTTGAATATTGATTGATGAATTGATTGAATAGTATTAGT
TGAAAATAAAGTAAGCTAGTCCCTAGCCTAATCTTAATGCCTCATGATGC
AAAAGCATCAAGAAAGAAAAAAAAAATGGCCGACAAAAACAAAATGGCTG
AAAAACTTACCAGCTTGCCTGAAGTGTGAGGCTGGAATAATCCAGGCAGT
GGTGTGATAAAATTTAATAAACTAAACTCATATTGATGAGAGAAAAGTTT
ATAAGTTATATGATTGAAGTTGGACTTAGAAAAATTTGATGTTCACTCCA
TGAAATCTCTTGTTGAACTGTTGTGAAAATGAAAGTCCTTGCTTAAATAG
CAAATTCTAGAAAATGTGTAATTTACAGAATGATAAATTCTAGGTCATAG
GTCAAAGTTGATAAATGATAAAAATGTTTAAATTATTACTGACCAAAACC
AAAAATTGGAAAAATGCATATTTTGAATAAATTAACATAAATAAACAAAT
TAGAATCCAAAATGGTGAACACTGAGAACAGAAAAACACTGAAAATGCAG
AAAACATGAGAAAAACTGGAAAACCGAGAAAAATGAGAAACACAGAGAAA
ACCTGAACAAAATGTGAGGGAATGCCAAAAATGATGCAAAAACACTGAAC
TGAAAAGGCTTAGCCGTTACACACCTCCCGAAAAAATGAAGAAGAAGGCT
CAGAAATTTTCCTGAAAAAGGAGAGGATAGCAAGGAATGGTAGATTAATT
TCAAGGACTGTTATGAAAATTGGTCTTCATGAAAGGAAGTTTTCTGTTAG
AGTACCTTATTACACAAATATTACTAGTCATTTTATGAACACAAATCATT
AAAAAATTTTGTGTTAATAAAATCTCCTTATTTAAAACCAGCCGCTGTTT
CTTTGAAAAAGCAGAAAAATTCGTGTTAATTTCAGATCGTGCAAATTTCA
AGGCCATTAAATACTTGCCTAGTATTATTTGTGTAATAAGCTAGTCTAAA
AGAAGAAAGAAGTTTATTATCTTGCTTTCTCTCTCTAAAGATATTTCACA
TTATGTTTCTTAGCTATTTTTGTCCAAAATCCTTTTAAAGATTGGGGATG
CCAAGAAGAGGGATTAACGACAGAGTAACAAACCTTTCTAGTTTAAAGCC
TAAAAATGTTCTTAACATGTTGTTATTTTCACCATTTGGGTATTTTAGAG
TTCTCAATTCAATGTTTTGCTCGAATGTTTTCTTAGAAGCACTTGTTATA
CATTTTTGGAAAGCTAAGGGGTAGGGGAATCAAAATAACTTAGGTGCCAA
TTTTTTTTCGGACACTTTGATGTGATTTTCGGTGTGATTTTCGGACAAAT
ATGACGGTCTCAGGCAAAAATCATAGGGTTAAAAATTAATGAAAATTTTA
GCTCGAGAAAACGGAGATCTGTTGTATATTTTTGGAAAGCTCTCAAAAAA
TTAGGATTAGAGATAAATTGCAAGTATACGTGATTTCAGTACCTAACTCG
AGATATTGAGCTTCCAAATGCGCAAAAACTGGACAAAAACAGCTGTTTCT
GGCTGAAAAACACTGTTTTTAAGGGTTAATATCTCGAGTTAGGTACAGAC
ATCACCTATACTTGCAATATATCTCTAATCTTAAGGTATGTGGAAACCTT
CGTTTGGAATTTTTATCAAAATTTTTTTTTTTGTTTAATCTGATGTAAAA
TTTCCAGAGCTTTCCAGTCATGCAATTATTGTTTATTAATTCCAAATATT
TTGGATGTTATGATAGAATTTGTATCTCTTCCTTGTTTCCCTTGTTTATA
AATAAAATGTCTCTCTTCTCTAGTTCAATAAGACCGCCAAACAATGTTCA
AAAAAGAAGAGGGGAACATTTGTGTTTTGCCCCTTTTTATATAAGAACGG
CTGCGTGAAAAGAATTGCTTAGAACAATCAATCTTGTGCCCATTATCTTT
TCGTCCATAATAGAGCCCTTTAGAAGTTACCAAAACAGATGAATGTATCA
TAATAAGGATATATGATTTATTTCGAAATANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAGTTTTGTTTAATCTTTGTGCAAACAAAAGATTAAGGGGA
AAACTTAAATCGATGATATCTCAAGACAGAAAATTGGGATACCTAGGGTC
ATTGCACGAGTAATAAGTCCCCTTATCTCTGAGCTACGTACTTCATTTTT
TCTTTATTATACTCGTGAATGATAGATCTAAAAAACGTTGCCACGTTTTT
CTTTCTTTTTGCCTTAAACTAAAGTTATGACCCTTTAAAACAAAAAACCG
TCATTATTTTCATATTTTTTGTCGTTTTTTGACGTTTTATCGAATAATTC
GAAAACTAAGCGTTTAGAAAAAAAAACGTGGCAACGTTTTTTTCGTGTTT
TTTTCTGGATCATGATCATACAAAAAGCTTTATTAAATTGCCAACATAAG
GGGACTTATCACTCTCTGAAAATGACATGGTCATTTTTCCTTTGTTACCT
TTTATTTCTTTGTCAAATTGACAAAATTTAATGTTATCAGCATCATTCGA
TAGAGAATTTAATAAGCTTTCCAAAAATATATACTTTTACTATTGAAATA
TATCTGTATTGAAAGCTATTAATAAAAGAGTCAGGTGTGGTGTAGAAGGT
TTCCACATACCTTAATTTTTTGAGAGCTTTCCAAAAATATACAACAGGTC
TATGTTTTCTCGAGCTAAAATTTTCATTAATTTTTAACCCTATGATTTTT
GCCTGAGACCGTCATATTTGTCCGAAAATCACATCAAAGTGTCCGAAAAA
AAATTGGCACCTAAGTTATTTTGATTCTCCTACCCCTTAGCTTTCCAAAA
ATGTATAACAAGTGCTTCTAACAAAACCTTCGAGCGATTCCAAAAAATCG
AACAAAATTCCCCCTACTATTAGTATGCTACAATTAAACGCAACTGGATG
ATTTTTGTTTGTTTATTTATTTTTTTTGAGTTGGAGAGTCGCAAAATTGT
TGATGTCCGTTTAAATCTCAGAATTTTAGCAAGTAATGGAGAGGATTTCC
CTGACTGGTAGATATTTTTCTATGGCTCAAAACTTAGGAAGTTTCTGAAA
TTCTATTTATATCAAGCTGTTTTAGTTATGTTGAACGGTGAAAAAGATGT
TTCGGTGTTTCAGACTCGATCTGCTCTCAAGGGAATGGACGCTGTTTCAG
TTATATATATTAAAATTAGCGAAAGGGGTTAAAACCACCCTCAGTAACTT
TTGATCTAGTTGAGATTTTGTACCAAATTGGGAACAGATACATATTGTCT
ATCCCAATATGATTTCACAACAATAATTTCAAGTCGGTGACATCACCATG
AAATTGACACCTGTCAGCTAACTCATGAAAAACCGTACCTAAAAAAACAT
CAAATAAAAGCAAACTTAACACTTCTTTATTGCAAAAGCATATAAACTTC
TTCAAACCCTGAACTTTGTTTTTATCTTTTTATCATCTTAGATTTCTGAT
TGGACTGGACAATTCCAAGACAGAAGTAAGTGTAATATTCTTTTTCTTGC
TGTGTGTAAAAGTTTGCCATATAATATTGAATTAAAACAGTTTAAAAATT
CATGAAACAATTTTTTTCTTATGGACATTTCCCGGTGTTTATAACTAGTA
AACTAGATCATTTTCATGAACTTGCTGATGGTTTCATTTTGGCTTTGGTT
TTGCATTAGTGTATATCATGAATTAAAGATTTGTTCTCATTTTGATTAAT
CCATAGATAAATATCACTCTCAGTTTGCTGCTGGCAATCAATATGCATAT
TACCATGAAGGTGATGAATCTTCCTTCCAACTGGTGGACACTTCAAAACC
ACAGAAGACTGCTTACCAAAAGAATCGCCAAAGATTCAATAATGTAAATA
CAATCAACTACTTTTGGAACCTCTTGATTTTTTCTGTAATCTTGAATTAG
AACATTGGGCTCCTCTTTATACCTTCTCTGAAAAATCCTCCCTGATTTAT
ATCTTTTGCTGACCAAAAACTCTTCTCGTCCAAAGACTTTGTTCAATACT
TGAAAATAGAAAAGTTTTTTACCATATTTTGTTTTCTTTTCTGATAGAAC
CGTATGAAGAGGGAACGTGAGAAACAACAAAGGAAAGAGGCCATTATGAT
GGGCCAGACAACTCGTGTTAAACTTCAAAAGAAGAACGCAAAGAATAATT
ATTATCACCGACGTTGGAATGATCGCCAACAGGTTTGTATATTAGAATGT
CTCAAATATGTCACCTGCCAGCATCTTCTGCCAAGGTTGACCTTTCCTCA
GTATGGCTGACCATACAACCTGTTACTTTAGATAATTAGGATGCCAAATA
AAACTTAAACTGTTGTCTCCTTGTCCTCAGCCCCGCTCCAAAACTTTGGA
TCTTTGATGGCAAGCCAACACTGGTGCTATAACTTCAGCATTATCTCAAT
CCAAAAATGCAAATGCTAAAACTTTTCCAAAGACACTTAGATTTACACAT
GATATCAAAATAAGATCAATTTACAAAGGAGTCTAAAAAGAATTTCTGAC
CTTCATATTTTTGTGCCGCCTAATGGAAAGCATTACTTTTTTAACAAAGT
ACTTACAACTTAAGTGTTTTAAAACTCGTTGCCATAAATAACTTTGATTA
TTACCACCCTTTTTTCATCTAGGTTCAAAAGAATCGTGCAGCTTCAGTTG
TTGTGAAAGATGATTGGAAGGTTGTTGAAGAATTCGATTTTCCAAGGCTT
GGTAAATTGAAATTGCCTGACATCAAAGATCCCGTTGACTTGTACGTAAA
GCTGCGTAAAGCACTTTTTTTTTGGTTTCTTTGTGCCATTGGTTCAAATT
TGGTTCAACACTTACCAACAAAGGAACATAAAATGTTTTCTAAATTAAGA
ATTGTATAGTAGTCAAGTAGAATTAGGGTGGGCCCTTGATAACTGATTTT
TAATGGTTTTTAAATGTCAAAAATAACAAGACAGGGAGATTCCTCTCGAT
GAGTAGATAAAGAAAATGGGGTCACTTTTGAAATTTGGACCACGGGGTCC
CGAGATATGACCTCTAAAGTCCAAAAAATGACGATTTTTATGACGTCAGC
ATTTTTACTGAGATGGATAAATTGGAACCCCTTGACCCCAAAAAATTTGA
CAAAATTTGACAGTCATCACTAAGTACTAAGGTTTGCCCCCGACTATTAA
GTAAGTAAGGACTTATTTTTAGCACAAATGCTTCATGTGGTATTTATTGA
AGGAAAAACCTTGACAGAACTTTCTAGTCTGTCTTAGTAGGTGATACTAA
TGAAATTAAAAAATTTNTTGACAGAACTTTCTAGTCTGTCTTAGTAGGTG
ATACTAATTAAATTAAAAAATTTGACCGTATTTCTTAGGTACAATTGTGG
TACTATGGAACAATACGACAAAGCTTACGATCGTGTCACTACCAAAAATG
AACGTGTCTTGGAACAGAACAGTCGCACGTTCCACCGTGTCACTACCACA
GACGATCCGATCATAAGAAAATTGACCAGTAAAGGAAATGTGTTTGGTAC
TGATGCCATCATCTCTGCTCTCATGTGTTGTACACGTTCTGTAGCCTCTT
GGGACATCATTGTGCAGCGAGTTGGGAAGAAACTCTTCTTCGATAAACGA
GATGATTCCGACTTTGGTAAGGATTTTTATTTAGATTTAAGTAAGACAGG
ACGTTCTTCAGTTTAATTTTAAGTACCTTATTACTTCGAAGTGAGCCAGG
ACTCCGAAGTCTTGGGCTTTAAGTAAATATTCTTTTGTACCTAAATGTGA
AGGTGGGTGAGATTTCGAGAGGTACCGCCTCAATTGATGACTTTTTGCCG
AAAATTGCAAAAGTTTTGCTCGGTCACACATCCCATTTAAACAAAAAAAT
TCATTACGATTTTCTAATGCCCTAGGTTCCTACCGCATGCAAACATAAAG
GCACAAAAGAGCGACCCAAAATAACTAACTTTATTGGAATCATCCATTTA
GATTTGATGTCAGTTTTCGAGACTACCCAAGAAGAGATGAAGGAAGAAGG
CATCAACAGCCCCAACAATTTGGCCAGTGAAGCCACCTACATCAATCAGA
ATTTCTCACAACAATGTCTGAAGAAAGGAGACACTTTGAAATATGATAAC
CCCAACCCTTTCGCTGAAGATGACGGTGATGAAGTCGCCTCTGTTGGATA
CAAGTAAGATACCTAATTAGTCTAGCACAGTAGACAAATAATGAAAGGGT
CAAATTTTAGTTCATATAAATTGATATTATCCCGTTACAAAGATCCTATT
ATCATGATACAGCCATATTACTGTATCACATGGATTATTTAAAACGAGTG
CAGTCAAGATATCTGATTTGATACGTTTTGACCACTGTTGTGTTCCGCCT
CTGCTCACTTTTTCGAAAGAGAGTGATGTTATTGAAACTGGTTCTCATTA
TATTGTGCTCCTTACACTAGGTATCGTAAATATGATATTGGTAATGGAAT
TGATTTGGTAGTTCGTTGTGAACACGATGCATACTTGAAAACACCTGCCG
GCGTTCAACAGTATTATAGTATCAAAGCTCTCAACGAATTCGATCCACGG
GTAAGAAACTAAACTTCCTTTATCCGTCTATGACTCGCAGGCTTGCTTAT
TTAACCTCAGTGTTGAGATTAGATCGAGCTGTATTTTATTTACTAAAACA
TGTTTGATTTCTTGTTCAAGTTTGATTTCTTGTTCAAAAATTCAAATCAA
GTTTGTTTGTTTCTTTGTTAGGCGAGACCAATTTAATTTATTGTTCTACG
GGAAGAACTTCAGAAAAATATGAGTTGGTTGAATTTAATCTAAGGTCGGA
AGCAACAGGCTTTTTTTCTCTTTATCGGTAAGCATCAAAAGACCCAAAAC
ACCATTTTTGAATTCTTTCCTTTCAGATCAGTAAGATCGAGTGGAGACAA
AAATTGGACTCTCAAATTGGTTCCGTTCTTGCAATTGAATTGAAAAACAA
TAGCAACAAAATTGCCAAGTGGACCTGTAATGCTATCCTTGCTTCTGCTG
ACATCATGAAAATCGGGTAAGAGAATCCGTTTGAATTGCGAATCACCCCT
ACCCTGGTACTTAAAGGGGACGCGGACCTGAAAAAACTTTAAATTGAGAA
GAATAAGGTTTGAAAGAAATGATCTTCAGGGGACCCAGTAGTATAAGTAC
GAGGGATAAATTTCTTTCACCATTGAATTTAAAACTTGTCCCGAACGATT
AAGTGATTGCCCACCCATGCTATTTTAAAGTTGTTCGAACTGGAAATTCA
TGTTTACCGTATGTTTTGTTACAGTTACGTCTCCCGTCACACGCCGAACG
ATACAACCCGTCACGTCATTTTGGGTACACAACAATTCAAACCCAACATG
TTTGCTCAGCAAATCGCCTTGGACATGGACAATTGTTGGGGTATCTTGCG
TGTGATCGTTGATACTTGTCTCAGCTTACCTGAAGGCAAATATCTCCTCT
TGAAAGATCCCAATAAGGTAAGAAAAGATTACTAAAAAACCCTGAATTCC
TGAAAATTAACCTCAATATTTCTATTTCCAAAAACTGTACAAACTTTCGC
GAGCAGAAACTTTCTTGTTGTCTAAAAATCGTGAATTTAATAAAAAAGTC
TTTTCGCGAGTATAAACTTTCGCGAAAAGGGCTTGCTATAAAAAGTTTTA
AATTAATTATCGGACCGCAAATTAACATCTTAAGAGTATGTTATCTTAAA
TGTTTCTTTTTTGTNCTTTCGCTGAAGATGACGGTGATGAAGTCGCCTCT
GTTGGATACAAGTAAGATACCTAATTAGTCTAGCACAGTAGACAAATAAT
GAAAGGGACAAATTTTAGTTCATATAAATTGATATTATCCCGTTACAAAG
ATCCTACTATTATGATACAGCCATATTACTGTATCACATGGATTATTTAA
AACGAGTGCAGTCAAGATATCTGATTTGATACGTTTTGACCACTGTTGTG
TTCCGCCTCTGCTCACTTTTTCGAAAGAGTGATGTTATTGAAACTGGTTC
TCATTATATTGTGCTCCTTACACTAGGTATCGTAAATATGATATTGGTAA
TGGAATTGATTTGGTAGTTCGTTGTGAACACGATGCATACTTGAAAACAC
CTGCCGGCGTTCAACAGTATTATAGTATCAAAGCTCTCAACGAATTCGAT
CCACGGGTAAGAAACTAAACTTCCTTTATCCGTCTATGACTCGCAGGCTT
GCTTATTTAACCTCAGTGTTGAGATTAGATCGAGCTGTATTTTATTTACT
AAAACATGTTTGATTTCTTGTTCAAGTTTGATTTCTTGTTCAAAAATTCA
AATCAAGTTTGTTTGTTTCTTTGTTAGGCGAGACCAATTTAATTTATTGT
TCTACGGGAAGAACTTCAGAAAAATATGAGTTGGTTGAATTTAATCTAAG
GTCGGAAGCAACAGGCTTTTTTTCTCTTTATCGGTAAGCATCAAAAGACC
CAAAACACCATTTTTGAATTCTTTCCTTTCAGATCAGTAAGATCGAGTGG
AGACAAAAATTGGACTCTCAAATTGGTTCCGTTCTTGCAATTGAATTGAA
AAACAATAGCAACAAAATTGCCAAGTGGACCTGTAATGCTATCCTTGCTT
CTGCTGACATCATGAAAATCGGGTAAGAGAATCCGTTTGAATTGCGAATC
ACCCCTACCCTGGTACTTAAAGGGGACGCGGACCTGAAAAAACTTTAAAT
TGAGAAGAATAAGGTTTGAAAGAAATGATCTTCAGGGGACCCAGTAGTAT
AAGTACGAGGGATAAATTTCTTTCACCATTGAATTTAAAACTTGTCCCGA
ACGATTAAGTGATTGCCCACCCATGCTATTTTAAAGTTGTTCGAACTGGA
AATTCATGTTTACCGTATGTTTTGTTACAGTTACGTCTCCCGTCACACGC
CGAACGATACAACCCGTCACGTCATTTTGGGTACACAACAATTCAAACCC
AACATGTTTGCTCAGCAAATCGCCTTGGACATGGACAATTGTTGGGGTAT
CTTGCGTGTGATCGTTGATACTTGTCTCAGCTTACCTGAAGGCAAATATC
TCCTCTTGAAAGATCCCAATAAGGTAAGAAAAGATTACTAAAAAACCCTG
AATTCCTGAAAATTAACCTCAATATTTCTATTTCCAAAAACTGTACAAAC
TTTCGCGAGCAGAAACTTTCTTGTTGTCTAAAAATCGTGAATTTAATAAA
AAAGTCTTTTCGCGAGTATAAACTTTCGCGAAAAGGGCTTGCTATAAAAA
GTTTTAAATTAATTATCGGACCGCAAATTAACATCTTAAGAGTATGTTAT
CTTAAATGTTTCTTTTTTGTAGGGAGTTGTTCGTTTGTACGACATTCCAG
ACAACACTTTCGAATCTGACGAGGATGAAGACTCTGCTGATGACGGTATG
TATAACTTTGAAATTCATTATTTTTCTCTTTAAACTAAGTACTGAACACC
TAGGCGTAAGGGCCATATCTTTTTAATAATCTTATGGAAATTCCAGCCTG
GTTTAGCTGCAAAAATACAAGCATGGTAACATCGGTAAAATAGTTAAATG
TGATAATTGGTACGAAAAAGACAATTCGTGTTAGACAATTTGTCATTAGG
GGAGTTGGAATGATTTTGATGACAACTTTCTATATGTCATTTTTTGGTCA
AAATTGGATCATTTGGATAACTAATTTTTAATGCAAATAAGAAAACAAAC
GTGCCAATCAGATTCGGCAATTTACCAAGCTGTTAATCCTCCACTGGTTC
AATAAAGTTTTTAATTCTGTTTGTTTTGTTTTTCTAGAAGACGAAGACGA
AAGCGAGGAAGAAGAAAAATAATTATCATAAATTATATTTTGACGAATAA
ATTATTTTTTTTGAAAATAGCAATTTACAATTTACAACATTTAGTATCTA
GGAGGCCCGTCACTTTGAAAGGAAAGAAACGAATCGCGATATTTGGAAAT
GTTTATTGCTTGCTTATTGTTCCGGAGAAATGGGATGCAAAAGTTCCGTG
CCCGGTCCAGCCTCTTCAAAAGGTCTCCCTTGCAGAGAGCTCAGAGAAGC
AACAAAATTAAAGCTAATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011809XLOC_011809Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021056-exon-sc0000377-1575043694:90091..90258TCONS_00021056-exon-sc0000377-1575043694:90091..90258Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1575043694:82634..82667TCONS_00021056-exon-sc0000377-1575043694:82634..82667Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1575043694:82266..82402TCONS_00021056-exon-sc0000377-1575043694:82266..82402Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1575043694:81927..82061TCONS_00021056-exon-sc0000377-1575043694:81927..82061Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1575043694:81368..81486TCONS_00021056-exon-sc0000377-1575043694:81368..81486Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1575043694:80493..80770TCONS_00021056-exon-sc0000377-1575043694:80493..80770Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1575043694:79956..80157TCONS_00021056-exon-sc0000377-1575043694:79956..80157Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1575043694:79559..79688TCONS_00021056-exon-sc0000377-1575043694:79559..79688Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1575043694:79107..79232TCONS_00021056-exon-sc0000377-1575043694:79107..79232Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1575043694:77487..77500TCONS_00021056-exon-sc0000377-1575043694:77487..77500Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1575043694:77036..77228TCONS_00021056-exon-sc0000377-1575043694:77036..77228Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1575043694:76714..76786TCONS_00021056-exon-sc0000377-1575043694:76714..76786Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1575043694:76036..76321TCONS_00021056-exon-sc0000377-1575043694:76036..76321Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1510915933:90091..90258TCONS_00021056-exon-sc0000377-1510915933:90091..90258Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1510915933:82634..82667TCONS_00021056-exon-sc0000377-1510915933:82634..82667Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1510915933:82266..82402TCONS_00021056-exon-sc0000377-1510915933:82266..82402Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1510915933:81927..82061TCONS_00021056-exon-sc0000377-1510915933:81927..82061Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1510915933:81368..81486TCONS_00021056-exon-sc0000377-1510915933:81368..81486Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1510915933:80493..80770TCONS_00021056-exon-sc0000377-1510915933:80493..80770Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1510915933:79956..80157TCONS_00021056-exon-sc0000377-1510915933:79956..80157Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1510915933:79559..79688TCONS_00021056-exon-sc0000377-1510915933:79559..79688Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1510915933:79107..79232TCONS_00021056-exon-sc0000377-1510915933:79107..79232Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1510915933:77487..77500TCONS_00021056-exon-sc0000377-1510915933:77487..77500Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1510915933:77036..77228TCONS_00021056-exon-sc0000377-1510915933:77036..77228Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1510915933:76714..76786TCONS_00021056-exon-sc0000377-1510915933:76714..76786Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1510915933:76036..76321TCONS_00021056-exon-sc0000377-1510915933:76036..76321Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1491911889:90091..90258TCONS_00021056-exon-sc0000377-1491911889:90091..90258Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1491911889:82634..82667TCONS_00021056-exon-sc0000377-1491911889:82634..82667Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1491911889:82266..82402TCONS_00021056-exon-sc0000377-1491911889:82266..82402Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1491911889:81927..82061TCONS_00021056-exon-sc0000377-1491911889:81927..82061Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1491911889:81368..81486TCONS_00021056-exon-sc0000377-1491911889:81368..81486Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1491911889:80493..80770TCONS_00021056-exon-sc0000377-1491911889:80493..80770Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1491911889:79956..80157TCONS_00021056-exon-sc0000377-1491911889:79956..80157Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1491911889:79559..79688TCONS_00021056-exon-sc0000377-1491911889:79559..79688Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1491911889:79107..79232TCONS_00021056-exon-sc0000377-1491911889:79107..79232Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1491911889:77487..77500TCONS_00021056-exon-sc0000377-1491911889:77487..77500Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1491911889:77036..77228TCONS_00021056-exon-sc0000377-1491911889:77036..77228Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1491911889:76714..76786TCONS_00021056-exon-sc0000377-1491911889:76714..76786Clytia hemisphaericaexon
TCONS_00021056-exon-sc0000377-1491911889:76036..76321TCONS_00021056-exon-sc0000377-1491911889:76036..76321Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000377supercontigsc0000377:76036..90258 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
142.857	139.057	57.083	48.3555	142.162	113.447	221.41	222.951	208.392	243.052	255.749	191.673	283.227	281.958	196.851	216.529	165.99	210.546	134.499	153.367	185.283	179.428	187.306	187.097	141.743	160.153	109.815	137.72	131.945	140.666
Blast
[Close]
BLAST of TCONS_00021056 vs. Swiss-Prot (Human)
Match: EIF3D (Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1)

HSP 1 Score: 583.948 bits (1504), Expect = 0.000e+0
Identity = 295/528 (55.87%), Postives = 386/528 (73.11%), Query Frame = 1 
Query:   49 AHFVPPVIQDNSNGWGPCTASNEFKDIPYQPFSKGDRIGKISDWTGQ-FQDR---NKYHSQFAAGNQYAYYHEGDESSFQLVDTSKPQKTAYQKNRQRF--------NNNRMXXXXXXXXXXXAIMMGQTTRVKLQKKNAKNNYYHRRWNDRQQVQKNRAASXXXXXXXXXXXXFDFPRLGKLKLPDIKDPVDLYNCGTMEQYDKAYDRVTTKNERVLEQNSRTFHRVTTTDDPIIRKLT-SKGNVFGTDAIISALMCCTRSVASWDIIVQRVGKKLFFDKRDDSDFDLMSVFETTQEEMKEEG--INSPNNLASEATYINQNFSQQCLKKG-DTLKYDNPNPFAEDDGD--EVASVGYKYRKYDIGNGIDLVVRCEHDAYLKTPAGVQQYYSIKALNEFDPR-ISKIEWRQKLDSQIGSVLAIELKNNSNKIAKWTCNAILASADIMKIGYVSRHTPNDTTRHVILGTQQFKPNMFAQQIALDMDNCWGILRVIVDTCLSLPEGKYLLLKDPNKGVVRLYDIPDNTF 1575
            A F+ PVIQDN +GWGPC    +F+D+PYQPFSKGDR+GK++DWTG  +QD+   NKY SQF  G+QYAY+HE DESSFQLVDT++ QKTAYQ+NR RF         + R   +   Q   ++    +  R++LQKK  K     ++W+  Q+ QK R +SV V+ DW+V EE DFP+L K++  ++ +P D+  CG +E YDKA+DR+TT++E+ L    R FH VTTTDDP+IRKL  ++GNVF TDAI++ LM CTRSV SWDI+VQRVG KLFFDKRD+SDFDL++V ET  E  ++EG   NSP NLA EATYIN NFSQQCL+ G +   + NPNPF EDD D  E+ASV Y+YR++ +G+ IDL+VRCEHD  +    G   + +IK LNE+D R  + ++WRQKLDSQ G+V+A ELKNNS K+A+WTC A+LA ++ +K+GYVSR+   D++RHVILGTQQFKPN FA QI L ++N WGILR ++D C+ L EGKYL+LKDPNK V+R+Y +PD TF
Sbjct:    2 AKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYSSQFGGGSQYAYFHEEDESSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQILPKSAKQKERERIRLQKKFQKQFGVRQKWD--QKSQKPRDSSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPNPNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTF 527
The following BLAST results are available for this feature:
BLAST of TCONS_00021056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF3D0.000e+055.87Eukaryotic translation initiation factor 3 subunit... [more]
back to top