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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021051 ID=TCONS_00021051|Name=TCONS_00021051|organism=Clytia hemisphaerica|type=transcript|length=1913bp
CTAGGATTACTTTCTTTTCGTAGTAAATATAATATCATATATAAATCATA
TCTGACAACTAGAACATTTGTAAAATCATGNTTCGTAGTAAATATAATAT
CATATATAAATTATATCTGACAACTAGAACATATGTAAAATCATATTATG
TCCAGTCAATAATAAATAGACCTCGTGCGATGTTCAGGGAAGCTTCCAAG
ATCCGAAGCATTCTCGGTAGCAAAATCCCATAAATAAAAGTCGATCAATA
CTGAATTAAGAATGGGTTCCTCATTTTCAACGCCCATTAAACTTTTATTT
AAATGTTCCCGTAAAAGCTCAATAGCGTGAATAGAACAACCACGTATTTC
CATTTCTTCGCGCTCTCCGTGTGGGAGTAATTTCTCACTCTGCACACGTT
TCATAAACTCATCCGTGTACGTGACCACACCCAGGGATAACAATGCTTGA
GGGACCCGGTAATCTGGAAACATAGTTAAATGGTGAATATTACGGAAACG
GCCGTGTCCGGTTGCTTCGAAGCAGGCCCAAATATCCGCAATTAGAATTT
GTACTCGTTTTTGGAACTGTACTGGCTGCCCTTCAAAACAACCAACATCg
ttgaaacaagaaaaattagTCGTGACAAGTTCTATAAGTTTCTCTACATC
TCCACTAGCTTCCTTGATAACATTTGCGAAATTTccgttaaatttttcaa
atagcaCTAAACCCACTTGGCGTAGATTTTCCCACCGTTGTTTGAGCATG
GGAAGTGTTGTCCCATTGGATGATCGAAACACTTGATTAACCGTTTCCAG
GGAGATTTCTTTGTTGTAAGAAGCAGTCGTTATGAGGATTCCTTcctgaa
aaaattcgaaagttagATTATtaattagatttttaaaaaagccATTTTTA
ATTTTACCGTTTGCTACAGCATGACAACCTGTGTTCCAAATAGAATtgaa
ctacttggagttgaaaaataaaatttaaaacggAATACTAACACCTGGCC
AACAGCTTTACATTCCGCTTATAGAAAAGCTCAACATTGAGAATTACCAT
TTACGAGCGGGCTACTTGATCGCGGCCATCCAGTCTTCTTTAAATAAACC
CCGTGCTAAAGTGATACTAAgcaaatacatgttttttataagaacaaact
atataagaacataaggcttcaatggccaaaatactaggaaaaagttaaga
acatttaaaggctttgcgACCTCTAAAAACAACTGATTTCTtagaaatgg
acaaaaatgctcacgaaatggtgaaattaataacattttaagaacatttt
ttggcttaaaacacAAAGAGTTTAGCACATCCAGAGGCTATTAAAACTat
tcgatgttcttataaaaagcgtgtagctaATTAATTGCTGTTTACCTCGA
CTGCTCGATTTACGCATGCGCACAGTGCTTCATAATCTTCATACGTCTTC
CCTTTGTACTCGACTTGAAACTGAGGCTCGTTCCTAGGCaaccaaaatga
aaaatttaatgtgTCAACGGTCAATATCCAATGCAGAGTATCATCATTCA
TTGCTTTAGGATGAAGAGGCCATTCTTTCCATTTCTTGATTGAATATTTG
TTTCTACCCATCACTTCTTTCAGTCTGAGAGCTGCTTTTGGAATTTCCTT
GTGCTGAATTTGAACATATTTGGTATTCTCTGCAATGTATTTACCGCTAT
CTCTGGGATTCAAAGATTGCTTCATGATTGATGCTTGTAATGATATGGTT
GTTGTTAAATGATTCCTTTTGTGTAAATTATTAtctactttgtttacttt
gatATTTGTTTTCTAGAAAAGAGTGGAACACGAGTCACTATAGAGAACCA
TAGTATTATTCAGTAGGTTTGCAACCGCAATCAGAAACGACCCAAAGGCT
AACTTTTCTTCAG Run BLAST on NCBI transcript from alignment at sc0000377:233997..235983+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021051 ID=TCONS_00021051|Name=TCONS_00021051|organism=Clytia hemisphaerica|type=transcript|length=1987bp|location=Sequence derived from alignment at sc0000377:233997..235983+ (Clytia hemisphaerica)
CTAGGATTACTTTCTTTTCGTAGTAAATATAATATCATATATAAATCATA
TCTGACAACTAGAACATTTGTAAAATCATGNTTCGTAGTAAATATAATAT
CATATATAAATTATATCTGACAACTAGAACATATGTAAAATCATATTATG
TCCAGTCAATAATAAATAGACCTCGTGCGATGTTCAGGGAAGCTTCCAAG
ATCCGAAGCATTCTCGGTAGCAAAATCCCATAAATAAAAGTCGATCAATA
CTGAATTAAGAATGGGTTCCTCATTTTCAACGCCCATTAAACTTTTATTT
AAATGTTCCCGTAAAAGCTCAATAGCGTGAATAGAACAACCACGTATTTC
CATTTCTTCGCGCTCTCCGTGTGGGAGTAATTTCTCACTCTGCACACGTT
TCATAAACTCATCCGTGTACGTGACCACACCCAGGGATAACAATGCTTGA
GGGACCCGGTAATCTGGAAACATAGTTAAATGGTGAATATTACGGAAACG
GCCGTGTCCGGTTGCTTCGAAGCAGGCCCAAATATCCGCAATTAGAATTT
GTACTCGTTTTTGGAACTGTACTGGCTGCCCTTCAAAACAACCAACATCg
ttgaaacaagaaaaattagTCGTGACAAGTTCTATAAGTTTCTCTACATC
TTCACCAGCTTCCTTGATAACATTCGCGAAATTTCCGTTAAATTTTTCAC
NAGTTCTATAAGTTTCTCTACATCTCCACTAGCTTCCTTGATAACATTTG
CGAAATTTccgttaaatttttcaaatagcaCTAAACCCACTTGGCGTAGA
TTTTCCCACCGTTGTTTGAGCATGGGAAGTGTTGTCCCATTGGATGATCG
AAACACTTGATTAACCGTTTCCAGGGAGATTTCTTTGTTGTAAGAAGCAG
TCGTTATGAGGATTCCTTcctgaaaaaattcgaaagttagATTATtaatt
agatttttaaaaaagccATTTTTAATTTTACCGTTTGCTACAGCATGACA
ACCTGTGTTCCAAATAGAATtgaactacttggagttgaaaaataaaattt
aaaacggAATACTAACACCTGGCCAACAGCTTTACATTCCGCTTATAGAA
AAGCTCAACATTGAGAATTACCATTTACGAGCGGGCTACTTGATCGCGGC
CATCCAGTCTTCTTTAAATAAACCCCGTGCTAAAGTGATACTAAgcaaat
acatgttttttataagaacaaactatataagaacataaggcttcaatggc
caaaatactaggaaaaagttaagaacatttaaaggctttgcgACCTCTAA
AAACAACTGATTTCTtagaaatggacaaaaatgctcacgaaatggtgaaa
ttaataacattttaagaacattttttggcttaaaacacAAAGAGTTTAGC
ACATCCAGAGGCTATTAAAACTattcgatgttcttataaaaagcgtgtag
ctaATTAATTGCTGTTTACCTCGACTGCTCGATTTACGCATGCGCACAGT
GCTTCATAATCTTCATACGTCTTCCCTTTGTACTCGACTTGAAACTGAGG
CTCGTTCCTAGGCaaccaaaatgaaaaatttaatgtgTCAACGGTCAATA
TCCAATGCAGAGTATCATCATTCATTGCTTTAGGATGAAGAGGCCATTCT
TTCCATTTCTTGATTGAATATTTGTTTCTACCCATCACTTCTTTCAGTCT
GAGAGCTGCTTTTGGAATTTCCTTGTGCTGAATTTGAACATATTTGGTAT
TCTCTGCAATGTATTTACCGCTATCTCTGGGATTCAAAGATTGCTTCATG
ATTGATGCTTGTAATGATATGGTTGTTGTTAAATGATTCCTTTTGTGTAA
ATTATTAtctactttgtttactttgatATTTGTTTTCTAGAAAAGAGTGG
AACACGAGTCACTATAGAGAACCATAGTATTATTCAGTAGGTTTGCAACC
GCAATCAGAAACGACCCAAAGGCTAACTTTTCTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021051-exon-sc0000377-1491911889:233997..234643 | TCONS_00021051-exon-sc0000377-1491911889:233997..234643 | Clytia hemisphaerica | exon |
| TCONS_00021051-exon-sc0000377-1510915933:233997..234643 | TCONS_00021051-exon-sc0000377-1510915933:233997..234643 | Clytia hemisphaerica | exon |
| TCONS_00021051-exon-sc0000377-1575043694:233997..234643 | TCONS_00021051-exon-sc0000377-1575043694:233997..234643 | Clytia hemisphaerica | exon |
| TCONS_00021051-exon-sc0000377-1491911889:234718..235983 | TCONS_00021051-exon-sc0000377-1491911889:234718..235983 | Clytia hemisphaerica | exon |
| TCONS_00021051-exon-sc0000377-1510915933:234718..235983 | TCONS_00021051-exon-sc0000377-1510915933:234718..235983 | Clytia hemisphaerica | exon |
| TCONS_00021051-exon-sc0000377-1575043694:234718..235983 | TCONS_00021051-exon-sc0000377-1575043694:234718..235983 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000377 | supercontig | sc0000377:233997..235983 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019438 | Q_salvage |
Blast
BLAST of TCONS_00021051 vs. Swiss-Prot (Human)
Match: QSPP (Queuosine salvage protein OS=Homo sapiens GN=C9orf64 PE=1 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 2.493e-59 Identity = 98/254 (38.58%), Postives = 158/254 (62.20%), Query Frame = -1
Query: 171 CHAVANGKIKNGFFKNLINNLTFEFFQEGILITTASYNKEISLETVNQVFRSSNGTTLPMLKQRWENLRQVGLVLFEKFNGNFANVIKEASGDVEKLIELVTTNFSCFNDVGCFEGQPVQFQKRVQILIADIWACFEATGHGRFRNIHHLTMFPDYRVPQALLSLGVVTYTDEFMKRVQSEKLLPHGEREEMEIRGCSIHAIELLREHLNKSLMGVENEEP--ILNSVLIDFYLWDFATENASDLGSFPEHRTR 926
C GK +G++ + EGI IT+ASY ++L+ V + RS ++P++++R L + G +L EKF G+F N ++E+ +KL+ LV +F + DV FEG+ V F KR QIL+AD W+ E G G F++I +TMF DYR+PQ L LG + Y+D+ +K++ ++L +G+R+E+EIRGCS+ +EL+R+ L + L+ + E+P +NS+L+D+YLWD+A ++ D+ P HR R
Sbjct: 87 CVVRYRGKTYSGYWS--LCAAVNRALDEGIPITSASYYATVTLDQVRNILRSDTDVSMPLVEERHRILNETGKILLEKFGGSFLNCVRESENSAQKLMHLVVESFPSYRDVTLFEGKRVSFYKRAQILVADTWSVLEGKGDGCFKDISSITMFADYRLPQVLAHLGALKYSDDLLKKLLKGEMLSYGDRQEVEIRGCSLWCVELIRDCLLE-LIEQKGEKPNGEINSILLDYYLWDYAHDHREDMKGIPFHRIR 337 HSP 2 Score: 88.1965 bits (217), Expect = 7.936e-19 Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = -3
Query: 1396 MKQSLNPRDSGKYIAENTKYVQIQHKEIPKAALRLKEVMGRNKYSIKKWKEW-PLHPKAMNDDTLHWILTVDTLNFSFWLPRNEPQFQVEYKGKTYEDYEALCACVNRAVE 1725
M LNPR+S K+IAEN++ V I + + A L + ++ WK L+P+A ++ ++W+ DTLNFSFW ++E + V Y+GKTY Y +LCA VNRA++
Sbjct: 1 MDGLLNPRESSKFIAENSRDVFIDSGGVRRVAELLLAKAAGPELRVEGWKALHELNPRAADEAAVNWVFVTDTLNFSFWSEQDEHKCVVRYRGKTYSGYWSLCAAVNRALD 111
The following BLAST results are available for this feature:
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