TCONS_00021014 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021014
Unique NameTCONS_00021014
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length911

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021014 ID=TCONS_00021014|Name=TCONS_00021014|organism=Clytia hemisphaerica|type=transcript|length=911bp
TTCAAATCGTGAAATATCTTGTGCTAGATAGTGACGAATtaagtgaattt
ttgaaaataaatcgcTGATCTATAATCAGATGTTGACCTACATACTCGAA
CATCAAGCTGTAATAGAAAAATAGCGACTATTCTTAAACCAAATCAGTTA
GGACAGAAGACATTGAAAACGGAagagaaaaaatatcaaaatgtatGCTC
TATGAAATGCATCGTCTATGAAGTACATCGTCTATGAAGTACCATAGGTT
CTGAAATTATAATTGATAAAATTGTAGCATTCCAGATCTTGGGTTAAGTC
TTCAGTTGTTACGAGAGTTCTTGCATTAAAATCATCATGGTTTGTAAAAC
ACTCCGGTCGAGCATGATAATATTTGATACTCTCTTTGCCTAGTCTCCAT
GACTTAGTTCCATCATCGTTTACATTCGGAAACCAATAGTTCTCCGTATG
GTGAATTGAGAAGGTTTCATCTAAATCTCCACCACAGAAATTACACTTTC
TACCCCGCCTTGTGGTTGTTCGGTAAACAACGAAGGGATTTTTGGACACC
GGAACTCGTGGCTTTCGTCCAAGAGATCCGCCGGGTGGGATTATGGGTCT
CCCGAATTGATTGGTGTTGTTAATTGCTGGTTGGGTATGGGTCAATGTTT
GAAGCACAACTGAACTGTATTGATTTTGTGTAGGGATGTACGACACAGAT
GGATGAGGTTGTTGAATCTCGGGAATAGCAGCATTTTGAACCGTTGGCAA
TGGTGGAAAAGAAGGCTGATACGACGGTACAGTCTGCTGACATGTAGGAA
AATGGGGCTGATGCGAAGGTGCGATTTGCTGGTATGAAGGAAAATTGGGT
TGAAACGGTTGCAGAGTCGGCGTACGAATGGCAGCGGTCAAGGATATCTT
AACTGGGCTAG
Run BLAST on NCBI

protein sequence of TCONS_00021014-protein

>TCONS_00021014-protein ID=TCONS_00021014-protein|Name=TCONS_00021014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
SPVKISLTAAIRTPTLQPFQPNFPSYQQIAPSHQPHFPTCQQTVPSYQPS
FPPLPTVQNAAIPEIQQPHPSVSYIPTQNQYSSVVLQTLTHTQPAINNTN
QFGRPIIPPGGSLGRKPRVPVSKNPFVVYRTTTRRGRKCNFCGGDLDETF
SIHHTENYWFPNVNDDGTKSWRLGKESIKYYHARPECFTNHDDFNARTLV
TTEDLTQDLECYNFINYNFRTYGTS
Run BLAST on NCBI

transcript from alignment at sc0000376:24340..25250

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021014 ID=TCONS_00021014|Name=TCONS_00021014|organism=Clytia hemisphaerica|type=transcript|length=911bp|location=Sequence derived from alignment at sc0000376:24340..25250 (Clytia hemisphaerica)
CTAGCCCAGTTAAGATATCCTTGACCGCTGCCATTCGTACGCCGACTCTG
CAACCGTTTCAACCCAATTTTCCTTCATACCAGCAAATCGCACCTTCGCA
TCAGCCCCATTTTCCTACATGTCAGCAGACTGTACCGTCGTATCAGCCTT
CTTTTCCACCATTGCCAACGGTTCAAAATGCTGCTATTCCCGAGATTCAA
CAACCTCATCCATCTGTGTCGTACATCCCTACACAAAATCAATACAGTTC
AGTTGTGCTTCAAACATTGACCCATACCCAACCAGCAATTAACAACACCA
ATCAATTCGGGAGACCCATAATCCCACCCGGCGGATCTCTTGGACGAAAG
CCACGAGTTCCGGTGTCCAAAAATCCCTTCGTTGTTTACCGAACAACCAC
AAGGCGGGGTAGAAAGTGTAATTTCTGTGGTGGAGATTTAGATGAAACCT
TCTCAATTCACCATACGGAGAACTATTGGTTTCCGAATGTAAACGATGAT
GGAACTAAGTCATGGAGACTAGGCAAAGAGAGTATCAAATATTATCATGC
TCGACCGGAGTGTTTTACAAACCATGATGATTTTAATGCAAGAACTCTCG
TAACAACTGAAGACTTAACCCAAGATCTGGAATGCTACAATTTTATCAAT
TATAATTTCAGAACCTATGGTACTTCATAGACGATGTACTTCATAGACGA
TGCATTTCATAGAGCatacattttgatattttttctctTCCGTTTTCAAT
GTCTTCTGTCCTAACTGATTTGGTTTAAGAATAGTCGCTATTTTTCTATT
ACAGCTTGATGTTCGAGTATGTAGGTCAACATCTGATTATAGATCAgcga
tttattttcaaaaattcacttaATTCGTCACTATCTAGCACAAGATATTT
CACGATTTGAA

Coding sequence (CDS) from alignment at sc0000376:24340..25250

>TCONS_00021014 ID=TCONS_00021014|Name=TCONS_00021014|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0000376:24340..25250 (Clytia hemisphaerica)
AGCCCAGTTAAGATATCCTTGACCGCTGCCATTCGTACGCCGACTCTGCA
ACCGTTTCAACCCAATTTTCCTTCATACCAGCAAATCGCACCTTCGCATC
AGCCCCATTTTCCTACATGTCAGCAGACTGTACCGTCGTATCAGCCTTCT
TTTCCACCATTGCCAACGGTTCAAAATGCTGCTATTCCCGAGATTCAACA
ACCTCATCCATCTGTGTCGTACATCCCTACACAAAATCAATACAGTTCAG
TTGTGCTTCAAACATTGACCCATACCCAACCAGCAATTAACAACACCAAT
CAATTCGGGAGACCCATAATCCCACCCGGCGGATCTCTTGGACGAAAGCC
ACGAGTTCCGGTGTCCAAAAATCCCTTCGTTGTTTACCGAACAACCACAA
GGCGGGGTAGAAAGTGTAATTTCTGTGGTGGAGATTTAGATGAAACCTTC
TCAATTCACCATACGGAGAACTATTGGTTTCCGAATGTAAACGATGATGG
AACTAAGTCATGGAGACTAGGCAAAGAGAGTATCAAATATTATCATGCTC
GACCGGAGTGTTTTACAAACCATGATGATTTTAATGCAAGAACTCTCGTA
ACAACTGAAGACTTAACCCAAGATCTGGAATGCTACAATTTTATCAATTA
TAATTTCAGAACCTATGGTACTTCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011785XLOC_011785Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021014-proteinTCONS_00021014-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021014-exon-sc0000376-1491911889:24340..25250TCONS_00021014-exon-sc0000376-1491911889:24340..25250Clytia hemisphaericaexon
TCONS_00021014-exon-sc0000376-1510915933:24340..25250TCONS_00021014-exon-sc0000376-1510915933:24340..25250Clytia hemisphaericaexon
TCONS_00021014-exon-sc0000376-1575043694:24340..25250TCONS_00021014-exon-sc0000376-1575043694:24340..25250Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:24340..25250 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0492826	0	0.00351293	0.274795	0.547348	0	0.558742	0.470907	0.339325	0.758074	0.362928	0.767163	0.54007	0.714161	0.272765	0.205592	0.507647	0	0	0.563179	0.28833	0.173838	0.251829	0.398921	0.322715	0	0	0.112187	0.161963
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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