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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021014 ID=TCONS_00021014|Name=TCONS_00021014|organism=Clytia hemisphaerica|type=transcript|length=911bp
TTCAAATCGTGAAATATCTTGTGCTAGATAGTGACGAATtaagtgaattt
ttgaaaataaatcgcTGATCTATAATCAGATGTTGACCTACATACTCGAA
CATCAAGCTGTAATAGAAAAATAGCGACTATTCTTAAACCAAATCAGTTA
GGACAGAAGACATTGAAAACGGAagagaaaaaatatcaaaatgtatGCTC
TATGAAATGCATCGTCTATGAAGTACATCGTCTATGAAGTACCATAGGTT
CTGAAATTATAATTGATAAAATTGTAGCATTCCAGATCTTGGGTTAAGTC
TTCAGTTGTTACGAGAGTTCTTGCATTAAAATCATCATGGTTTGTAAAAC
ACTCCGGTCGAGCATGATAATATTTGATACTCTCTTTGCCTAGTCTCCAT
GACTTAGTTCCATCATCGTTTACATTCGGAAACCAATAGTTCTCCGTATG
GTGAATTGAGAAGGTTTCATCTAAATCTCCACCACAGAAATTACACTTTC
TACCCCGCCTTGTGGTTGTTCGGTAAACAACGAAGGGATTTTTGGACACC
GGAACTCGTGGCTTTCGTCCAAGAGATCCGCCGGGTGGGATTATGGGTCT
CCCGAATTGATTGGTGTTGTTAATTGCTGGTTGGGTATGGGTCAATGTTT
GAAGCACAACTGAACTGTATTGATTTTGTGTAGGGATGTACGACACAGAT
GGATGAGGTTGTTGAATCTCGGGAATAGCAGCATTTTGAACCGTTGGCAA
TGGTGGAAAAGAAGGCTGATACGACGGTACAGTCTGCTGACATGTAGGAA
AATGGGGCTGATGCGAAGGTGCGATTTGCTGGTATGAAGGAAAATTGGGT
TGAAACGGTTGCAGAGTCGGCGTACGAATGGCAGCGGTCAAGGATATCTT
AACTGGGCTAG Run BLAST on NCBI protein sequence of TCONS_00021014-protein >TCONS_00021014-protein ID=TCONS_00021014-protein|Name=TCONS_00021014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
SPVKISLTAAIRTPTLQPFQPNFPSYQQIAPSHQPHFPTCQQTVPSYQPS
FPPLPTVQNAAIPEIQQPHPSVSYIPTQNQYSSVVLQTLTHTQPAINNTN
QFGRPIIPPGGSLGRKPRVPVSKNPFVVYRTTTRRGRKCNFCGGDLDETF
SIHHTENYWFPNVNDDGTKSWRLGKESIKYYHARPECFTNHDDFNARTLV
TTEDLTQDLECYNFINYNFRTYGTS Run BLAST on NCBI transcript from alignment at sc0000376:24340..25250 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021014 ID=TCONS_00021014|Name=TCONS_00021014|organism=Clytia hemisphaerica|type=transcript|length=911bp|location=Sequence derived from alignment at sc0000376:24340..25250 (Clytia hemisphaerica)
CTAGCCCAGTTAAGATATCCTTGACCGCTGCCATTCGTACGCCGACTCTG
CAACCGTTTCAACCCAATTTTCCTTCATACCAGCAAATCGCACCTTCGCA
TCAGCCCCATTTTCCTACATGTCAGCAGACTGTACCGTCGTATCAGCCTT
CTTTTCCACCATTGCCAACGGTTCAAAATGCTGCTATTCCCGAGATTCAA
CAACCTCATCCATCTGTGTCGTACATCCCTACACAAAATCAATACAGTTC
AGTTGTGCTTCAAACATTGACCCATACCCAACCAGCAATTAACAACACCA
ATCAATTCGGGAGACCCATAATCCCACCCGGCGGATCTCTTGGACGAAAG
CCACGAGTTCCGGTGTCCAAAAATCCCTTCGTTGTTTACCGAACAACCAC
AAGGCGGGGTAGAAAGTGTAATTTCTGTGGTGGAGATTTAGATGAAACCT
TCTCAATTCACCATACGGAGAACTATTGGTTTCCGAATGTAAACGATGAT
GGAACTAAGTCATGGAGACTAGGCAAAGAGAGTATCAAATATTATCATGC
TCGACCGGAGTGTTTTACAAACCATGATGATTTTAATGCAAGAACTCTCG
TAACAACTGAAGACTTAACCCAAGATCTGGAATGCTACAATTTTATCAAT
TATAATTTCAGAACCTATGGTACTTCATAGACGATGTACTTCATAGACGA
TGCATTTCATAGAGCatacattttgatattttttctctTCCGTTTTCAAT
GTCTTCTGTCCTAACTGATTTGGTTTAAGAATAGTCGCTATTTTTCTATT
ACAGCTTGATGTTCGAGTATGTAGGTCAACATCTGATTATAGATCAgcga
tttattttcaaaaattcacttaATTCGTCACTATCTAGCACAAGATATTT
CACGATTTGAA Coding sequence (CDS) from alignment at sc0000376:24340..25250 >TCONS_00021014 ID=TCONS_00021014|Name=TCONS_00021014|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0000376:24340..25250 (Clytia hemisphaerica)
AGCCCAGTTAAGATATCCTTGACCGCTGCCATTCGTACGCCGACTCTGCA
ACCGTTTCAACCCAATTTTCCTTCATACCAGCAAATCGCACCTTCGCATC
AGCCCCATTTTCCTACATGTCAGCAGACTGTACCGTCGTATCAGCCTTCT
TTTCCACCATTGCCAACGGTTCAAAATGCTGCTATTCCCGAGATTCAACA
ACCTCATCCATCTGTGTCGTACATCCCTACACAAAATCAATACAGTTCAG
TTGTGCTTCAAACATTGACCCATACCCAACCAGCAATTAACAACACCAAT
CAATTCGGGAGACCCATAATCCCACCCGGCGGATCTCTTGGACGAAAGCC
ACGAGTTCCGGTGTCCAAAAATCCCTTCGTTGTTTACCGAACAACCACAA
GGCGGGGTAGAAAGTGTAATTTCTGTGGTGGAGATTTAGATGAAACCTTC
TCAATTCACCATACGGAGAACTATTGGTTTCCGAATGTAAACGATGATGG
AACTAAGTCATGGAGACTAGGCAAAGAGAGTATCAAATATTATCATGCTC
GACCGGAGTGTTTTACAAACCATGATGATTTTAATGCAAGAACTCTCGTA
ACAACTGAAGACTTAACCCAAGATCTGGAATGCTACAATTTTATCAATTA
TAATTTCAGAACCTATGGTACTTCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021014-exon-sc0000376-1491911889:24340..25250 | TCONS_00021014-exon-sc0000376-1491911889:24340..25250 | Clytia hemisphaerica | exon |
| TCONS_00021014-exon-sc0000376-1510915933:24340..25250 | TCONS_00021014-exon-sc0000376-1510915933:24340..25250 | Clytia hemisphaerica | exon |
| TCONS_00021014-exon-sc0000376-1575043694:24340..25250 | TCONS_00021014-exon-sc0000376-1575043694:24340..25250 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000376 | supercontig | sc0000376:24340..25250 . |
Blast
The following BLAST results are available for this feature:
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