|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020987 ID=TCONS_00020987|Name=TCONS_00020987|organism=Clytia hemisphaerica|type=transcript|length=1346bp
AGGGGGAGGGGAAGGGATCCAGTCAAACCAAAACTAAAATACCTTTTAAG
CCCTTCcatttaatttaaaatttcccCAGTTCCTTACGTTTctctttttt
gattattttgtagGGCCTACACCCTGGATGAAAGCGTTTGCTGTGCTTTG
AGACATGATCAgtcaaaagaacaaaaactgTGGCAACGATTTCACAACAT
ATATCTATCAAGTCCAAAGACAAGAGGTCGTGACTTGGGGTATTTAGCTT
GTACGATGAACAAAACCCAATTAACTTGGCTTTTCGAGTACACCCTGAGT
TTGGCACATACTAACCCTGGAGATGCAACATACTATATTCAATTCATGAT
GAGAAGCGATTTAGCACGTGACACGGCTTGGGAATTCGTACAAAAGAATT
GGCCAGAATATAACAAAAGATATAGCAAGAACGCTTTTCTACTGAAAGAG
CTCATTTCCTCAATTGTACCGCTATTCAGAACAGCCTCTGAGCTGCATCA
AGTGCAACAGTTTTACAATAAAGAACAGCACACGATGGGTACCGGCAAAG
TAGCTTTTGAACAAGGTATTTCAGAAATTAAAATGCATGTTGAACTGACA
AGAGTTGTACAGTGGGAGCTGAAGAATGCTGGTAAAAACTCTTTCCGAAA
TCCTTTCCTTCCAGATTTTACTTAAAGGTAAATTTGCTCATTAGTTTATT
ATATATTATTCAATATGAATTCCCTAAGTCAGTGGTTTTATTTATTGCAA
AAGAAACGAGAATTTAATCAAATCTCCTTTGTTGAAATATGAAGAAAATT
AATGATAGNATTGCAAAAGAAACGAGAATTTAATCAAAAATCCTTTGTTg
aaatatgaagaaaatttaTGATAACTTGAAGTACTTTTCGTAAATCTTAA
GCCTTCAAAAGGGTCACCGCTTGAAAATGGACACACAACTCCCCCGGAAA
TGTCAACAGAAGGTATCATGCCAATATATGTAAAGGAGCTTACAAGTTCA
AAATCTTGGATATCTGCCAATAGTTGTTGTAGTTGTTTGTTCATTTGCGA
TTTGACATTTGCTACCTAGAAAAAAAGATACGAATTTTAACGTCATAATC
AAAATCTTTAATAAGTTATACCTCATCAACACCCCCCTTCCCAAAACCAT
TTCTTATAAATATTTAACGTTTTATATTTAagataaatatattttcatat
tatttgCCTACATTAGTAAAAGCTCAACATTTTAACCACGAATTTTCGAG
TACAATAATACGCtctaaaaatgtaaatattataATATGTTGTTATTACT
TACTAATATATTGTTATATGTATCATAAAGTTCCGTGTTATTAGGA Run BLAST on NCBI protein sequence of TCONS_00020987-protein >TCONS_00020987-protein ID=TCONS_00020987-protein|Name=TCONS_00020987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MNKTQLTWLFEYTLSLAHTNPGDATYYIQFMMRSDLARDTAWEFVQKNWP
EYNKRYSKNAFLLKELISSIVPLFRTASELHQVQQFYNKEQHTMGTGKVA
FEQGISEIKMHVELTRVVQWELKNAGKNSFRNPFLPDFT Run BLAST on NCBI transcript from alignment at sc0000376:171767..173354+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020987 ID=TCONS_00020987|Name=TCONS_00020987|organism=Clytia hemisphaerica|type=transcript|length=1588bp|location=Sequence derived from alignment at sc0000376:171767..173354+ (Clytia hemisphaerica)
AGGGGGAGGGGAAGGGATCCAGTCAAACCAAAACTAAAATACCTTTTAAG
CCCTTCcatttaatttaaaatttcccCAGTTCCTTACGTTTctctttttt
gattattttgtagGGCCTACACCCTGGATGAAAGCGTTTGCTGTGCTTTG
AGACATGATCAgtcaaaagaacaaaaactgTGGCAACGATTTCACAACAT
ATATCTATCAAGTCCAAAGACAAGAGGTCGTGACTTGGGGTATTTAGCTT
GTACGATGAACAAAACCCAATTAACTTGGTAAATGGAAAGTATTGAAATT
CATGACCACTAATTATGGCGTATACATTTCTAATGGGAGATCCTAGGTGG
CTGTTTGAAGCCTGTTTTCGCTCCATTCTTGAAATTTTCTCGATAAATTT
CTTATGTTGNGTTTGAAGCCTGTTTTCGCTCCATTCTTGAAATTTTCTCG
ATAAATTTCTCATGTTATATGGAAAATAAAATTCACTCTGTAATGGTTCT
TTATTGATTTGTTATTGTAGGCTTTTCGAGTACACCCTGAGTTTGGCACA
TACTAACCCTGGAGATGCAACATACTATATTCAATTCATGATGAGAAGCG
ATTTAGCACGTGACACGGCTTGGGAATTCGTACAAAAGAATTGGCCAGAA
TATAACAAAAGATATAGCAAGAACGCTTTTCTACTGAAAGAGCTCATTTC
CTCAATTGTACCGCTATTCAGAACAGCCTCTGAGCTGCATCAAGTGCAAC
AGTTTTACAATAAAGAACAGCACACGATGGGTACCGGCAAAGTAGCTTTT
GAACAAGGTATTTCAGAAATTAAAATGCATGTTGAACTGACAAGAGTTGT
ACAGTGGGAGCTGAAGAATGCTGGTAAAAACTCTTTCCGAAATCCTTTCC
TTCCAGATTTTACTTAAAGGTAAATTTGCTCATTAGTTTATTATATATTA
TTCAATATGAATTCCCTAAGTCAGTGGTTTTATTTATTGCAAAAGAAACG
AGAATTTAATCAAATCTCCTTTGTTGAAATATGAAGAAAATTAATGATAG
NATTGCAAAAGAAACGAGAATTTAATCAAAAATCCTTTGTTgaaatatga
agaaaatttaTGATAACTTGAAGTACTTTTCGTAAATCTTAAGCCTTCAA
AAGGGTCACCGCTTGAAAATGGACACACAACTCCCCCGGAAATGTCAACA
GAAGGTATCATGCCAATATATGTAAAGGAGCTTACAAGTTCAAAATCTTG
GATATCTGCCAATAGTTGTTGTAGTTGTTTGTTCATTTGCGATTTGACAT
TTGCTACCTAGAAAAAAAGATACGAATTTTAACGTCATAATCAAAATCTT
TAATAAGTTATACCTCATCAACACCCCCCTTCCCAAAACCATTTCTTATA
AATATTTAACGTTTTATATTTAagataaatatattttcatattatttgCC
TACATTAGTAAAAGCTCAACATTTTAACCACGAATTTTCGAGTACAATAA
TACGCtctaaaaatgtaaatattataATATGTTGTTATTACTTACTAATA
TATTGTTATATGTATCATAAAGTTCCGTGTTATTAGGA Coding sequence (CDS) from alignment at sc0000376:171767..173354+ >TCONS_00020987 ID=TCONS_00020987|Name=TCONS_00020987|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0000376:171767..173354+ (Clytia hemisphaerica)
ATGAACAAAACCCAATTAACTTGGCTTTTCGAGTACACCCTGAGTTTGGC
ACATACTAACCCTGGAGATGCAACATACTATATTCAATTCATGATGAGAA
GCGATTTAGCACGTGACACGGCTTGGGAATTCGTACAAAAGAATTGGCCA
GAATATAACAAAAGATATAGCAAGAACGCTTTTCTACTGAAAGAGCTCAT
TTCCTCAATTGTACCGCTATTCAGAACAGCCTCTGAGCTGCATCAAGTGC
AACAGTTTTACAATAAAGAACAGCACACGATGGGTACCGGCAAAGTAGCT
TTTGAACAAGGTATTTCAGAAATTAAAATGCATGTTGAACTGACAAGAGT
TGTACAGTGGGAGCTGAAGAATGCTGGTAAAAACTCTTTCCGAAATCCTT
TCCTTCCAGATTTTACTTAAATGAACAAAACCCAATTAACTTGGCTTTTC
GAGTACACCCTGAGTTTGGCACATACTAACCCTGGAGATGCAACATACTA
TATTCAATTCATGATGAGAAGCGATTTAGCACGTGACACGGCTTGGGAAT
TCGTACAAAAGAATTGGCCAGAATATAACAAAAGATATAGCAAGAACGCT
TTTCTACTGAAAGAGCTCATTTCCTCAATTGTACCGCTATTCAGAACAGC
CTCTGAGCTGCATCAAGTGCAACAGTTTTACAATAAAGAACAGCACACGA
TGGGTACCGGCAAAGTAGCTTTTGAACAAGGTATTTCAGAAATTAAAATG
CATGTTGAACTGACAAGAGTTGTACAGTGGGAGCTGAAGAATGCTGGTAA
AAACTCTTTCCGAAATCCTTTCCTTCCAGATTTTACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020987-exon-sc0000376-1491911889:171767..172044 | TCONS_00020987-exon-sc0000376-1491911889:171767..172044 | Clytia hemisphaerica | exon |
| TCONS_00020987-exon-sc0000376-1510915933:171767..172044 | TCONS_00020987-exon-sc0000376-1510915933:171767..172044 | Clytia hemisphaerica | exon |
| TCONS_00020987-exon-sc0000376-1575043694:171767..172044 | TCONS_00020987-exon-sc0000376-1575043694:171767..172044 | Clytia hemisphaerica | exon |
| TCONS_00020987-exon-sc0000376-1491911889:172287..173354 | TCONS_00020987-exon-sc0000376-1491911889:172287..173354 | Clytia hemisphaerica | exon |
| TCONS_00020987-exon-sc0000376-1510915933:172287..173354 | TCONS_00020987-exon-sc0000376-1510915933:172287..173354 | Clytia hemisphaerica | exon |
| TCONS_00020987-exon-sc0000376-1575043694:172287..173354 | TCONS_00020987-exon-sc0000376-1575043694:172287..173354 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000376 | supercontig | sc0000376:171767..173354 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024571 | ERAP1-like_C_dom |
Blast
The following BLAST results are available for this feature:
|
