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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020949 ID=TCONS_00020949|Name=TCONS_00020949|organism=Clytia hemisphaerica|type=transcript|length=1333bpRun BLAST on NCBI protein sequence of TCONS_00020949-protein >TCONS_00020949-protein ID=TCONS_00020949-protein|Name=TCONS_00020949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=400bp TFVPNFKSIPFLDQKLCKAGGKHPPLRIQNLKKPDNNRVKPNDGNSFAWKRun BLAST on NCBI transcript from alignment at sc0000374:92867..98652- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020949 ID=TCONS_00020949|Name=TCONS_00020949|organism=Clytia hemisphaerica|type=transcript|length=5786bp|location=Sequence derived from alignment at sc0000374:92867..98652- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000374:92867..98652- >TCONS_00020949 ID=TCONS_00020949|Name=TCONS_00020949|organism=Clytia hemisphaerica|type=CDS|length=7218bp|location=Sequence derived from alignment at sc0000374:92867..98652- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00020949 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 7.821e-24 Identity = 67/162 (41.36%), Postives = 84/162 (51.85%), Query Frame = 2
Query: 698 WSPWSECSTTC-NGTRNRQREC------FG--FCDGPTDELENCGTPYCPIHGGLSEWSQWSNCDAXXXXXXXXXXXNCDAPKPQHNGNDCVGSLVDSDDCGVGNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC-NPANYGGNLECPGSNDEKQPCNVEV 1153
W PW CS +C GT+ R R C FG +CDG +++ C CPIHG + W+ WS C +CGGG RTR C P PQ+ G C GS V SD C CP W+ WS W +C + CN G R RTC NP G C G + + Q CN ++
Sbjct: 4649 WQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM 4810 HSP 2 Score: 95.1301 bits (235), Expect = 1.573e-20 Identity = 64/164 (39.02%), Postives = 79/164 (48.17%), Query Frame = 2
Query: 686 GFGPWSPWSECSTTC-NGTRNRQREC--------FGFCDGPTDELENCGTPYCPIHGGLSEWSQWSNCDAXXXXXXXXXXXNCDAPKPQHNGNDCVGSLVDSDDCGVGNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTCN--PANYGGNLECPGSNDEKQPCN 1144
GF WS W CS TC G + R R C C G E+ NC CP+ G SEWS W C +CG G TRTR C+ P QH G C G+ V+ C + CPV W+ W W +C + C G R R CN P +GG+ C G+ + Q CN
Sbjct: 4531 GFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSY-CDGAETQMQVCN 4693 HSP 3 Score: 87.8113 bits (216), Expect = 3.345e-18 Identity = 60/161 (37.27%), Postives = 72/161 (44.72%), Query Frame = 2
Query: 698 WSPWSECSTTCNG-TRNRQREC------FG--FCDGPTDELENCGTPYCPIHGGLSEWSQWSNCDAXXXXXXXXXXXNCDAPKPQHNGNDCVGSLVDSDDCGVGNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC-NPANYGGNLECPGSNDEKQPCNVE 1150
W+ WS CS +C G R R R C +G C+G + + C + CP HG S WS W C TC GG R R CD P P + G C G C CPVD W W WS C C G R+R C +P G CPG + CNV+
Sbjct: 4706 WASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQ 4866 HSP 4 Score: 80.4925 bits (197), Expect = 3.863e-17 Identity = 57/159 (35.85%), Postives = 75/159 (47.17%), Query Frame = 2
Query: 698 WSPWSECSTTC-NGTRNRQRECFGF--------CDGPTDELENCGTPYCPIHGGLSEWSQWSNCDAXXXXXXXXXXXNCDAPKPQHNGNDCVGSLVDSDDCGVGNCPVDAQWAEWSVWSSCDKPCNTGHYVRRRTC-NPANYGGNLECPGSNDEKQPCN 1144
WS W EC+ +C G + R R C C+G E+ C CP+HG S W W C +CG GT TR R C+ P P G+ C G+ C NCP+ +WA W+ WS+C C G R R C +P G +C GS+ + CN
Sbjct: 4592 WSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCN 4750 HSP 5 Score: 25.7942 bits (55), Expect = 3.863e-17 Identity = 11/34 (32.35%), Postives = 16/34 (47.06%), Query Frame = 3
Query: 1161 NPANYGGNPECLGSNDEKQPCNVEVC--DEKWAN 1256
NP G C G + + Q CN ++C D W +
Sbjct: 4786 NPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGS 4819 The following BLAST results are available for this feature:
BLAST of TCONS_00020949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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