TCONS_00020857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020857
Unique NameTCONS_00020857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020857 ID=TCONS_00020857|Name=TCONS_00020857|organism=Clytia hemisphaerica|type=transcript|length=388bp
TATTTGTCAGAGCGAAGATAGAGGTACACGATTCACCAACCTCTTCGGAT
AACACTAACAACAAAATTCATGAACTCACGATGACAGAAACTCCATATGT
TGAAAAATCTGCGGATGTCCTCAAAACAAATGCTAACCGGAATTCGGAAA
AGAATAGTGACCGTAATACGGGAAAGGTTGATAAAACCGGAAAGGATACA
ATTAAAAATCCTTACGCTGTCGATGCTTGATTCATCATTGATCGACccta
gaaaattttagaaaaaaaaaagtttttagagTCAAATCCTACCATTGTAA
ATAGAATTTACTCAACATTTTTAATGTTCAATTTAATTACTGATGTAATT
TTGTCTTAAAACCTTTTGCAACTTTGTATAAATACAAC
Run BLAST on NCBI

transcript from alignment at sc0000371:151636..152023

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020857 ID=TCONS_00020857|Name=TCONS_00020857|organism=Clytia hemisphaerica|type=transcript|length=388bp|location=Sequence derived from alignment at sc0000371:151636..152023 (Clytia hemisphaerica)
GTTGTATTTATACAAAGTTGCAAAAGGTTTTAAGACAAAATTACATCAGT
AATTAAATTGAACATTAAAAATGTTGAGTAAATTCTATTTACAATGGTAG
GATTTGActctaaaaacttttttttttctaaaattttctaggGTCGATCA
ATGATGAATCAAGCATCGACAGCGTAAGGATTTTTAATTGTATCCTTTCC
GGTTTTATCAACCTTTCCCGTATTACGGTCACTATTCTTTTCCGAATTCC
GGTTAGCATTTGTTTTGAGGACATCCGCAGATTTTTCAACATATGGAGTT
TCTGTCATCGTGAGTTCATGAATTTTGTTGTTAGTGTTATCCGAAGAGGT
TGGTGAATCGTGTACCTCTATCTTCGCTCTGACAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011696XLOC_011696Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020857-exon-sc0000371-1491911889:151636..152023TCONS_00020857-exon-sc0000371-1491911889:151636..152023Clytia hemisphaericaexon
TCONS_00020857-exon-sc0000371-1510915933:151636..152023TCONS_00020857-exon-sc0000371-1510915933:151636..152023Clytia hemisphaericaexon
TCONS_00020857-exon-sc0000371-1575043694:151636..152023TCONS_00020857-exon-sc0000371-1575043694:151636..152023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000371supercontigsc0000371:151636..152023 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.1982	0.96638	0.448824	1.09776	0	0.211211	0	0.238557	0.668076	0.82752	3.21285	0.659999	0	0	0	0	0	0	0	0	0	0	1.13626	1.03302	0	0	0	0	0.879945	0.224131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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